HEADER TRANSFERASE 27-AUG-14 4UXW TITLE STRUCTURE OF DELTA4-DGKA-APO IN 9.9 MAG COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIACYLGLYCEROL KINASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: DIACYLGLYCEROL KINASE-DELTA 4, DAGK, DIGLYCERIDE KINASE, COMPND 5 DGK; COMPND 6 EC: 2.7.1.107; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 ATCC: 29425; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: WH1061; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PTRCHISB; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTRCHISB-DGKA-DELTA4 KEYWDS TRANSFERASE, DGKA, IN MESO CRYSTALLIZATION, LIPID CUBIC PHASE, KEYWDS 2 LIPIDIC CUBIC PHASE, LIPIDIC MESOPHASE, MEMBRANE PROTEIN, KEYWDS 3 MONOACYLGLYCEROL EXPDTA X-RAY DIFFRACTION AUTHOR D.LI,V.E.PYE,D.ARAGAO,M.CAFFREY REVDAT 6 07-FEB-24 4UXW 1 REMARK REVDAT 5 29-MAR-23 4UXW 1 AUTHOR REMARK LINK REVDAT 4 03-APR-19 4UXW 1 REMARK REVDAT 3 06-MAR-19 4UXW 1 REMARK REVDAT 2 13-JAN-16 4UXW 1 JRNL REVDAT 1 30-SEP-15 4UXW 0 JRNL AUTH D.LI,P.J.STANSFELD,M.S.P.SANSOM,A.KEOGH,L.VOGELEY,N.HOWE, JRNL AUTH 2 J.A.LYONS,D.ARAGAO,P.FROMME,R.FROMME,S.BASU,I.GROTJOHANN, JRNL AUTH 3 C.KUPITZ,K.RENDEK,U.WEIERSTALL,N.A.ZATSEPIN,V.CHEREZOV, JRNL AUTH 4 W.LIU,S.BANDARU,N.J.ENGLISH,C.GATI,A.BARTY,O.YEFANOV, JRNL AUTH 5 H.N.CHAPMAN,K.DIEDERICHS,M.MESSERSCHMIDT,S.BOUTET, JRNL AUTH 6 G.J.WILLIAMS,M.MARVIN SEIBERT,M.CAFFREY JRNL TITL TERNARY STRUCTURE REVEALS MECHANISM OF A MEMBRANE JRNL TITL 2 DIACYLGLYCEROL KINASE. JRNL REF NAT.COMMUN. V. 6 10140 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26673816 JRNL DOI 10.1038/NCOMMS10140 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 11121 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 566 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7381 - 4.9994 0.99 2772 131 0.2239 0.2500 REMARK 3 2 4.9994 - 3.9689 1.00 2632 145 0.2032 0.2553 REMARK 3 3 3.9689 - 3.4674 1.00 2577 145 0.2414 0.3143 REMARK 3 4 3.4674 - 3.1505 1.00 2574 145 0.2716 0.3286 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 109.7 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 97.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 2797 REMARK 3 ANGLE : 1.286 3762 REMARK 3 CHIRALITY : 0.071 452 REMARK 3 PLANARITY : 0.005 444 REMARK 3 DIHEDRAL : 14.157 1023 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THERE ARE THREE NCS-RELATED MOLECULES REMARK 3 IN THE ASYMMETRIC UNIT BUT NCS RESTRAINTS WERE NOT USED IN THE REMARK 3 REFINEMENT. REMARK 4 REMARK 4 4UXW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1290061567. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL CRYO REMARK 200 -COOLED REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11151 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 45.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 1.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ZE5 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7-10 %(V/V) 2-METHYL-2, 4-PENTANEDIOL REMARK 280 (MPD), 0.1 M SODIUM CHLORIDE, 0.1 M LITHIUM NITRATE, 0.1 M REMARK 280 SODIUM CITRATE/HCL PH 5.6. CRYSTALLIZED USING THE IN MESO REMARK 280 (LIPIDIC CUBIC PHASE) METHOD AT 4 DEGREES CELCIUS WITH THE 9.9 REMARK 280 MONOACYLGLYCEROL (9.9 MAG) AS THE HOSTING LIPID., TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.44000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 132.88000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 132.88000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 66.44000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLU A -1 REMARK 465 LEU A 0 REMARK 465 ALA A 1 REMARK 465 ASN A 2 REMARK 465 ASN A 3 REMARK 465 THR A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLY B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 GLU B -1 REMARK 465 LEU B 0 REMARK 465 ALA B 1 REMARK 465 ASN B 2 REMARK 465 ASN B 3 REMARK 465 THR B 4 REMARK 465 GLY C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLU C -1 REMARK 465 LEU C 0 REMARK 465 ALA C 1 REMARK 465 ASN C 2 REMARK 465 ASN C 3 REMARK 465 THR C 4 REMARK 465 THR C 5 REMARK 465 GLY C 6 REMARK 465 PHE C 7 REMARK 465 THR C 8 REMARK 465 ARG C 9 REMARK 465 ILE C 10 REMARK 465 ILE C 11 REMARK 465 LYS C 12 REMARK 465 ALA C 13 REMARK 465 ALA C 14 REMARK 465 GLY C 15 REMARK 465 GLY C 121 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 121 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 120 -121.31 -109.18 REMARK 500 GLU C 85 -133.80 51.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C1122 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 76 OE2 REMARK 620 2 GLU C 76 OE1 52.4 REMARK 620 3 NO3 C1121 O1 54.7 88.2 REMARK 620 4 NO3 C1121 N 75.0 115.0 26.9 REMARK 620 5 NO3 C1121 O3 101.3 138.7 52.1 26.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 1122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 C 1121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 1122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC C 1123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC B 1123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC B 1124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 1121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 1122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC C 1124 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UXX RELATED DB: PDB REMARK 900 STRUCTURE OF DELTA4-DGKA WITH AMPPCP IN 9.9 MAG REMARK 900 RELATED ID: 4UXZ RELATED DB: PDB REMARK 900 STRUCTURE OF DELTA7-DGKA-SYN IN 7.9 MAG TO 2.18 ANGSTROM RESOLUTION REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PROTEIN CONTAINS AN N-TERMINAL HIS TAG 'GHHHHHHEL'. REMARK 999 COMPARED TO THE WILDTYPE FORM, THE PROTEIN HAS FOUR REMARK 999 MUTATIONS. THEY ARE I53V, I70L, M96L AND V107D. DBREF 4UXW A 1 121 UNP P0ABN1 KDGL_ECOLI 2 122 DBREF 4UXW B 1 121 UNP P0ABN1 KDGL_ECOLI 2 122 DBREF 4UXW C 1 121 UNP P0ABN1 KDGL_ECOLI 2 122 SEQADV 4UXW GLY A -8 UNP P0ABN1 EXPRESSION TAG SEQADV 4UXW HIS A -7 UNP P0ABN1 EXPRESSION TAG SEQADV 4UXW HIS A -6 UNP P0ABN1 EXPRESSION TAG SEQADV 4UXW HIS A -5 UNP P0ABN1 EXPRESSION TAG SEQADV 4UXW HIS A -4 UNP P0ABN1 EXPRESSION TAG SEQADV 4UXW HIS A -3 UNP P0ABN1 EXPRESSION TAG SEQADV 4UXW HIS A -2 UNP P0ABN1 EXPRESSION TAG SEQADV 4UXW GLU A -1 UNP P0ABN1 EXPRESSION TAG SEQADV 4UXW LEU A 0 UNP P0ABN1 EXPRESSION TAG SEQADV 4UXW CYS A 53 UNP P0ABN1 ILE 54 ENGINEERED MUTATION SEQADV 4UXW LEU A 70 UNP P0ABN1 ILE 71 ENGINEERED MUTATION SEQADV 4UXW LEU A 96 UNP P0ABN1 MET 97 ENGINEERED MUTATION SEQADV 4UXW ASP A 107 UNP P0ABN1 VAL 108 ENGINEERED MUTATION SEQADV 4UXW GLY B -8 UNP P0ABN1 EXPRESSION TAG SEQADV 4UXW HIS B -7 UNP P0ABN1 EXPRESSION TAG SEQADV 4UXW HIS B -6 UNP P0ABN1 EXPRESSION TAG SEQADV 4UXW HIS B -5 UNP P0ABN1 EXPRESSION TAG SEQADV 4UXW HIS B -4 UNP P0ABN1 EXPRESSION TAG SEQADV 4UXW HIS B -3 UNP P0ABN1 EXPRESSION TAG SEQADV 4UXW HIS B -2 UNP P0ABN1 EXPRESSION TAG SEQADV 4UXW GLU B -1 UNP P0ABN1 EXPRESSION TAG SEQADV 4UXW LEU B 0 UNP P0ABN1 EXPRESSION TAG SEQADV 4UXW CYS B 53 UNP P0ABN1 ILE 54 ENGINEERED MUTATION SEQADV 4UXW LEU B 70 UNP P0ABN1 ILE 71 ENGINEERED MUTATION SEQADV 4UXW LEU B 96 UNP P0ABN1 MET 97 ENGINEERED MUTATION SEQADV 4UXW ASP B 107 UNP P0ABN1 VAL 108 ENGINEERED MUTATION SEQADV 4UXW GLY C -8 UNP P0ABN1 EXPRESSION TAG SEQADV 4UXW HIS C -7 UNP P0ABN1 EXPRESSION TAG SEQADV 4UXW HIS C -6 UNP P0ABN1 EXPRESSION TAG SEQADV 4UXW HIS C -5 UNP P0ABN1 EXPRESSION TAG SEQADV 4UXW HIS C -4 UNP P0ABN1 EXPRESSION TAG SEQADV 4UXW HIS C -3 UNP P0ABN1 EXPRESSION TAG SEQADV 4UXW HIS C -2 UNP P0ABN1 EXPRESSION TAG SEQADV 4UXW GLU C -1 UNP P0ABN1 EXPRESSION TAG SEQADV 4UXW LEU C 0 UNP P0ABN1 EXPRESSION TAG SEQADV 4UXW CYS C 53 UNP P0ABN1 ILE 54 ENGINEERED MUTATION SEQADV 4UXW LEU C 70 UNP P0ABN1 ILE 71 ENGINEERED MUTATION SEQADV 4UXW LEU C 96 UNP P0ABN1 MET 97 ENGINEERED MUTATION SEQADV 4UXW ASP C 107 UNP P0ABN1 VAL 108 ENGINEERED MUTATION SEQRES 1 A 130 GLY HIS HIS HIS HIS HIS HIS GLU LEU ALA ASN ASN THR SEQRES 2 A 130 THR GLY PHE THR ARG ILE ILE LYS ALA ALA GLY TYR SER SEQRES 3 A 130 TRP LYS GLY LEU ARG ALA ALA TRP ILE ASN GLU ALA ALA SEQRES 4 A 130 PHE ARG GLN GLU GLY VAL ALA VAL LEU LEU ALA VAL VAL SEQRES 5 A 130 ILE ALA CYS TRP LEU ASP VAL ASP ALA CYS THR ARG VAL SEQRES 6 A 130 LEU LEU ILE SER SER VAL MET LEU VAL MET ILE VAL GLU SEQRES 7 A 130 LEU LEU ASN SER ALA ILE GLU ALA VAL VAL ASP ARG ILE SEQRES 8 A 130 GLY SER GLU TYR HIS GLU LEU SER GLY ARG ALA LYS ASP SEQRES 9 A 130 LEU GLY SER ALA ALA VAL LEU ILE ALA ILE ILE ASP ALA SEQRES 10 A 130 VAL ILE THR TRP CYS ILE LEU LEU TRP SER HIS PHE GLY SEQRES 1 B 130 GLY HIS HIS HIS HIS HIS HIS GLU LEU ALA ASN ASN THR SEQRES 2 B 130 THR GLY PHE THR ARG ILE ILE LYS ALA ALA GLY TYR SER SEQRES 3 B 130 TRP LYS GLY LEU ARG ALA ALA TRP ILE ASN GLU ALA ALA SEQRES 4 B 130 PHE ARG GLN GLU GLY VAL ALA VAL LEU LEU ALA VAL VAL SEQRES 5 B 130 ILE ALA CYS TRP LEU ASP VAL ASP ALA CYS THR ARG VAL SEQRES 6 B 130 LEU LEU ILE SER SER VAL MET LEU VAL MET ILE VAL GLU SEQRES 7 B 130 LEU LEU ASN SER ALA ILE GLU ALA VAL VAL ASP ARG ILE SEQRES 8 B 130 GLY SER GLU TYR HIS GLU LEU SER GLY ARG ALA LYS ASP SEQRES 9 B 130 LEU GLY SER ALA ALA VAL LEU ILE ALA ILE ILE ASP ALA SEQRES 10 B 130 VAL ILE THR TRP CYS ILE LEU LEU TRP SER HIS PHE GLY SEQRES 1 C 130 GLY HIS HIS HIS HIS HIS HIS GLU LEU ALA ASN ASN THR SEQRES 2 C 130 THR GLY PHE THR ARG ILE ILE LYS ALA ALA GLY TYR SER SEQRES 3 C 130 TRP LYS GLY LEU ARG ALA ALA TRP ILE ASN GLU ALA ALA SEQRES 4 C 130 PHE ARG GLN GLU GLY VAL ALA VAL LEU LEU ALA VAL VAL SEQRES 5 C 130 ILE ALA CYS TRP LEU ASP VAL ASP ALA CYS THR ARG VAL SEQRES 6 C 130 LEU LEU ILE SER SER VAL MET LEU VAL MET ILE VAL GLU SEQRES 7 C 130 LEU LEU ASN SER ALA ILE GLU ALA VAL VAL ASP ARG ILE SEQRES 8 C 130 GLY SER GLU TYR HIS GLU LEU SER GLY ARG ALA LYS ASP SEQRES 9 C 130 LEU GLY SER ALA ALA VAL LEU ILE ALA ILE ILE ASP ALA SEQRES 10 C 130 VAL ILE THR TRP CYS ILE LEU LEU TRP SER HIS PHE GLY HET OLC A1121 25 HET OLC A1122 25 HET MPD B1122 8 HET OLC B1123 25 HET OLC B1124 25 HET NO3 C1121 4 HET NA C1122 1 HET OLC C1123 25 HET OLC C1124 25 HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM NO3 NITRATE ION HETNAM NA SODIUM ION HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 4 OLC 6(C21 H40 O4) FORMUL 6 MPD C6 H14 O2 FORMUL 9 NO3 N O3 1- FORMUL 10 NA NA 1+ HELIX 1 1 PHE A 7 GLU A 28 1 22 HELIX 2 2 GLU A 28 LEU A 48 1 21 HELIX 3 3 ASP A 51 HIS A 87 1 37 HELIX 4 4 GLY A 91 PHE A 120 1 30 HELIX 5 5 THR B 8 GLU B 28 1 21 HELIX 6 6 GLU B 28 LEU B 48 1 21 HELIX 7 7 ASP B 51 TYR B 86 1 36 HELIX 8 8 GLY B 91 PHE B 120 1 30 HELIX 9 9 TYR C 16 GLU C 28 1 13 HELIX 10 10 GLU C 28 LEU C 48 1 21 HELIX 11 11 ASP C 51 ILE C 82 1 32 HELIX 12 12 HIS C 87 PHE C 120 1 34 LINK OE2 GLU C 76 NA NA C1122 1555 1555 2.62 LINK OE1 GLU C 76 NA NA C1122 1555 1555 2.41 LINK O1 NO3 C1121 NA NA C1122 1555 1555 3.03 LINK N NO3 C1121 NA NA C1122 1555 1555 3.01 LINK O3 NO3 C1121 NA NA C1122 1555 1555 2.31 SITE 1 AC1 4 TYR B 16 LYS C 94 ASP C 95 NO3 C1121 SITE 1 AC2 5 TYR B 16 MPD B1122 GLU C 76 NA C1122 SITE 2 AC2 5 OLC C1124 SITE 1 AC3 3 GLU C 76 NO3 C1121 OLC C1124 SITE 1 AC4 10 GLY B 6 ARG B 9 ILE B 10 ALA C 30 SITE 2 AC4 10 GLN C 33 GLU C 34 GLU C 69 ALA C 108 SITE 3 AC4 10 TRP C 112 OLC C1124 SITE 1 AC5 9 SER A 17 ALA B 30 GLU B 34 ALA B 37 SITE 2 AC5 9 ALA B 41 ILE B 44 GLU B 69 SER B 98 SITE 3 AC5 9 OLC B1124 SITE 1 AC6 11 ILE A 10 TRP A 117 GLN B 33 GLU B 34 SITE 2 AC6 11 ALA B 37 VAL B 38 VAL B 62 VAL B 109 SITE 3 AC6 11 CYS B 113 OLC B1123 TRP C 18 SITE 1 AC7 4 TRP A 18 ARG A 22 TRP A 25 ILE B 110 SITE 1 AC8 12 GLN A 33 GLU A 34 ILE A 44 VAL A 65 SITE 2 AC8 12 ILE A 105 ALA A 108 TRP A 112 LEU A 116 SITE 3 AC8 12 VAL B 36 LEU B 39 VAL B 43 TRP B 47 SITE 1 AC9 9 SER B 17 GLU C 69 ASN C 72 SER C 98 SITE 2 AC9 9 LEU C 102 ILE C 106 NO3 C1121 NA C1122 SITE 3 AC9 9 OLC C1123 CRYST1 72.800 72.800 199.320 90.00 90.00 120.00 P 31 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013736 0.007931 0.000000 0.00000 SCALE2 0.000000 0.015861 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005017 0.00000