HEADER HYDROLASE 28-AUG-14 4UY1 TITLE NOVEL PYRAZOLE SERIES OF GROUP X SECRETORY PHOSPHOLIPASE A2 (SPLA2-X) TITLE 2 INHIBITORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROUP 10 SECRETORY PHOSPHOLIPASE A2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GX SPLA2, SPLA2-X, PHOSPHATIDYLCHOLINE 2-ACYLHYDROLASE 10; COMPND 5 EC: 3.1.1.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: GOLD KEYWDS HYDROLASE, FRAGMENT BASED LEAD GENERATION, VIRTUAL SCREENING, DRUG KEYWDS 2 DISCOVERY EXPDTA X-RAY DIFFRACTION AUTHOR J.SANDMARK,L.OSTER,K.HALLBERG,C.BODIN,H.CHEN REVDAT 4 04-APR-18 4UY1 1 REMARK REVDAT 3 17-DEC-14 4UY1 1 JRNL REVDAT 2 29-OCT-14 4UY1 1 JRNL REVDAT 1 15-OCT-14 4UY1 0 JRNL AUTH H.CHEN,L.KNERR,T.AKERUD,K.HALLBERG,C.BODIN,L.OSTER,M.ROHMAN, JRNL AUTH 2 K.OSTERLUND,H.G.BEISEL,T.OLSSON,J.BRENGDHAL,J.SANDMARK JRNL TITL DISCOVERY OF A NOVEL PYRAZOLE SERIES OF GROUP X SECRETED JRNL TITL 2 PHOSPHOLIPASE A2 INHIBITOR (SPLA2X) VIA FRAGMENT BASED JRNL TITL 3 VIRTUAL SCREENING JRNL REF BIOORG.MED.CHEM.LETT. V. 24 5251 2014 JRNL REFN ISSN 0960-894X JRNL PMID 25316315 JRNL DOI 10.1016/J.BMCL.2014.09.058 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 11840 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 610 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 717 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1880 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 150 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.347 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.224 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2078 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1808 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2784 ; 1.487 ; 2.012 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4192 ; 3.735 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 243 ; 4.846 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;35.605 ;24.831 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 305 ;16.775 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;22.758 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 274 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2311 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 437 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 978 ; 1.482 ; 2.792 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 977 ; 1.482 ; 2.788 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1219 ; 2.280 ; 4.176 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1100 ; 2.494 ; 3.256 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4UY1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1290061625. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13366 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 66.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.94000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG 400, 0.1 M BIS-TRIS PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 13.88250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.09350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.30000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.09350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 13.88250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.30000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 123 REMARK 465 GLN A 124 REMARK 465 GLY A 125 REMARK 465 ILE A 126 REMARK 465 LEU A 127 REMARK 465 GLU A 128 REMARK 465 LEU A 129 REMARK 465 ALA A 130 REMARK 465 GLY A 131 REMARK 465 GLN B 124 REMARK 465 GLY B 125 REMARK 465 ILE B 126 REMARK 465 LEU B 127 REMARK 465 GLU B 128 REMARK 465 LEU B 129 REMARK 465 ALA B 130 REMARK 465 GLY B 131 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2028 O HOH B 2030 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 22 88.03 -151.55 REMARK 500 ASP B 37 -166.06 -160.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 200 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TJM A1130 O14 REMARK 620 2 1PE A1125 OH2 103.7 REMARK 620 3 PHE A 26 O 78.8 173.8 REMARK 620 4 GLY A 28 O 78.3 88.2 86.8 REMARK 620 5 GLY A 30 O 156.1 88.9 86.9 82.0 REMARK 620 6 ASP A 47 OD1 70.9 74.7 111.4 139.5 132.7 REMARK 620 7 ASP A 47 OD2 115.3 88.2 95.9 166.5 84.9 51.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 200 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 26 O REMARK 620 2 ASP B 47 OD1 114.4 REMARK 620 3 ASP B 47 OD2 96.3 52.5 REMARK 620 4 GLY B 28 O 86.5 137.4 166.8 REMARK 620 5 HOH B2008 O 168.3 69.1 94.5 84.0 REMARK 620 6 GLY B 30 O 94.3 126.8 82.1 84.8 91.8 REMARK 620 7 TJM B1129 O14 71.8 78.2 119.2 74.0 98.8 155.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 1124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 1125 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE B 1125 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS B 1126 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 1126 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS B 1127 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 1127 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 1128 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 1129 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS B 1128 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TJM A 1130 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TJM B 1129 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1131 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1132 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 1130 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 1131 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1133 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 1132 DBREF 4UY1 A 1 123 UNP O15496 PA2GX_HUMAN 43 165 DBREF 4UY1 B 1 123 UNP O15496 PA2GX_HUMAN 43 165 SEQADV 4UY1 GLN A 124 UNP O15496 EXPRESSION TAG SEQADV 4UY1 GLY A 125 UNP O15496 EXPRESSION TAG SEQADV 4UY1 ILE A 126 UNP O15496 EXPRESSION TAG SEQADV 4UY1 LEU A 127 UNP O15496 EXPRESSION TAG SEQADV 4UY1 GLU A 128 UNP O15496 EXPRESSION TAG SEQADV 4UY1 LEU A 129 UNP O15496 EXPRESSION TAG SEQADV 4UY1 ALA A 130 UNP O15496 EXPRESSION TAG SEQADV 4UY1 GLY A 131 UNP O15496 EXPRESSION TAG SEQADV 4UY1 GLN B 124 UNP O15496 EXPRESSION TAG SEQADV 4UY1 GLY B 125 UNP O15496 EXPRESSION TAG SEQADV 4UY1 ILE B 126 UNP O15496 EXPRESSION TAG SEQADV 4UY1 LEU B 127 UNP O15496 EXPRESSION TAG SEQADV 4UY1 GLU B 128 UNP O15496 EXPRESSION TAG SEQADV 4UY1 LEU B 129 UNP O15496 EXPRESSION TAG SEQADV 4UY1 ALA B 130 UNP O15496 EXPRESSION TAG SEQADV 4UY1 GLY B 131 UNP O15496 EXPRESSION TAG SEQRES 1 A 131 GLY ILE LEU GLU LEU ALA GLY THR VAL GLY CYS VAL GLY SEQRES 2 A 131 PRO ARG THR PRO ILE ALA TYR MET LYS TYR GLY CYS PHE SEQRES 3 A 131 CYS GLY LEU GLY GLY HIS GLY GLN PRO ARG ASP ALA ILE SEQRES 4 A 131 ASP TRP CYS CYS HIS GLY HIS ASP CYS CYS TYR THR ARG SEQRES 5 A 131 ALA GLU GLU ALA GLY CYS SER PRO LYS THR GLU ARG TYR SEQRES 6 A 131 SER TRP GLN CYS VAL ASN GLN SER VAL LEU CYS GLY PRO SEQRES 7 A 131 ALA GLU ASN LYS CYS GLN GLU LEU LEU CYS LYS CYS ASP SEQRES 8 A 131 GLN GLU ILE ALA ASN CYS LEU ALA GLN THR GLU TYR ASN SEQRES 9 A 131 LEU LYS TYR LEU PHE TYR PRO GLN PHE LEU CYS GLU PRO SEQRES 10 A 131 ASP SER PRO LYS CYS ASP GLN GLY ILE LEU GLU LEU ALA SEQRES 11 A 131 GLY SEQRES 1 B 131 GLY ILE LEU GLU LEU ALA GLY THR VAL GLY CYS VAL GLY SEQRES 2 B 131 PRO ARG THR PRO ILE ALA TYR MET LYS TYR GLY CYS PHE SEQRES 3 B 131 CYS GLY LEU GLY GLY HIS GLY GLN PRO ARG ASP ALA ILE SEQRES 4 B 131 ASP TRP CYS CYS HIS GLY HIS ASP CYS CYS TYR THR ARG SEQRES 5 B 131 ALA GLU GLU ALA GLY CYS SER PRO LYS THR GLU ARG TYR SEQRES 6 B 131 SER TRP GLN CYS VAL ASN GLN SER VAL LEU CYS GLY PRO SEQRES 7 B 131 ALA GLU ASN LYS CYS GLN GLU LEU LEU CYS LYS CYS ASP SEQRES 8 B 131 GLN GLU ILE ALA ASN CYS LEU ALA GLN THR GLU TYR ASN SEQRES 9 B 131 LEU LYS TYR LEU PHE TYR PRO GLN PHE LEU CYS GLU PRO SEQRES 10 B 131 ASP SER PRO LYS CYS ASP GLN GLY ILE LEU GLU LEU ALA SEQRES 11 B 131 GLY HET CA A 200 1 HET 1PE A1124 16 HET 1PE A1125 16 HET DMS A1126 4 HET DMS A1127 4 HET DMS A1128 4 HET DMS A1129 4 HET TJM A1130 15 HET PEG A1131 7 HET PEG A1132 7 HET PEG A1133 7 HET CA B 200 1 HET 1PE B1125 16 HET DMS B1126 4 HET DMS B1127 4 HET DMS B1128 4 HET TJM B1129 15 HET PEG B1130 7 HET PEG B1131 7 HET PEG B1132 7 HETNAM CA CALCIUM ION HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM DMS DIMETHYL SULFOXIDE HETNAM TJM 5-(2,5-DIMETHYL-3-THIENYL)-1H-PYRAZOLE-3-CARBOXAMIDE HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN 1PE PEG400 FORMUL 3 CA 2(CA 2+) FORMUL 4 1PE 3(C10 H22 O6) FORMUL 6 DMS 7(C2 H6 O S) FORMUL 10 TJM 2(C10 H11 N3 O S) FORMUL 11 PEG 6(C4 H10 O3) FORMUL 23 HOH *113(H2 O) HELIX 1 1 GLY A 1 GLY A 13 1 13 HELIX 2 2 THR A 16 MET A 21 5 6 HELIX 3 3 ASP A 37 ALA A 56 1 20 HELIX 4 4 ASN A 81 GLN A 100 1 20 HELIX 5 5 ASN A 104 TYR A 107 5 4 HELIX 6 6 PRO A 111 CYS A 115 5 5 HELIX 7 7 GLY B 1 GLY B 13 1 13 HELIX 8 8 THR B 16 MET B 21 5 6 HELIX 9 9 ASP B 37 ALA B 56 1 20 HELIX 10 10 ASN B 81 GLN B 100 1 20 HELIX 11 11 ASN B 104 TYR B 107 5 4 HELIX 12 12 PRO B 111 CYS B 115 5 5 SHEET 1 AA 2 TRP A 67 CYS A 69 0 SHEET 2 AA 2 VAL A 74 CYS A 76 -1 O LEU A 75 N GLN A 68 SHEET 1 BA 2 TRP B 67 VAL B 70 0 SHEET 2 BA 2 SER B 73 CYS B 76 -1 O SER B 73 N VAL B 70 SSBOND 1 CYS A 11 CYS A 69 1555 1555 2.04 SSBOND 2 CYS A 25 CYS A 115 1555 1555 2.03 SSBOND 3 CYS A 27 CYS A 43 1555 1555 2.01 SSBOND 4 CYS A 42 CYS A 97 1555 1555 2.05 SSBOND 5 CYS A 48 CYS A 122 1555 1555 2.03 SSBOND 6 CYS A 49 CYS A 90 1555 1555 2.05 SSBOND 7 CYS A 58 CYS A 83 1555 1555 2.07 SSBOND 8 CYS A 76 CYS A 88 1555 1555 2.05 SSBOND 9 CYS B 11 CYS B 69 1555 1555 2.03 SSBOND 10 CYS B 25 CYS B 115 1555 1555 2.03 SSBOND 11 CYS B 27 CYS B 43 1555 1555 2.05 SSBOND 12 CYS B 42 CYS B 97 1555 1555 2.08 SSBOND 13 CYS B 48 CYS B 122 1555 1555 2.03 SSBOND 14 CYS B 49 CYS B 90 1555 1555 2.04 SSBOND 15 CYS B 58 CYS B 83 1555 1555 2.03 SSBOND 16 CYS B 76 CYS B 88 1555 1555 2.02 LINK CA CA A 200 O14 TJM A1130 1555 1555 2.43 LINK CA CA A 200 OH2 1PE A1125 1555 1555 2.70 LINK CA CA A 200 O PHE A 26 1555 1555 2.37 LINK CA CA A 200 O GLY A 28 1555 1555 2.35 LINK CA CA A 200 O GLY A 30 1555 1555 2.31 LINK CA CA A 200 OD1 ASP A 47 1555 1555 2.54 LINK CA CA A 200 OD2 ASP A 47 1555 1555 2.52 LINK CA CA B 200 O PHE B 26 1555 1555 2.29 LINK CA CA B 200 OD1 ASP B 47 1555 1555 2.52 LINK CA CA B 200 OD2 ASP B 47 1555 1555 2.43 LINK CA CA B 200 O GLY B 28 1555 1555 2.41 LINK CA CA B 200 O HOH B2008 1555 1555 2.60 LINK CA CA B 200 O GLY B 30 1555 1555 2.31 LINK CA CA B 200 O14 TJM B1129 1555 1555 2.25 CISPEP 1 GLY A 77 PRO A 78 0 -3.86 CISPEP 2 GLY B 13 PRO B 14 0 11.82 CISPEP 3 GLY B 77 PRO B 78 0 -2.02 SITE 1 AC1 6 PHE A 26 GLY A 28 GLY A 30 ASP A 47 SITE 2 AC1 6 1PE A1125 TJM A1130 SITE 1 AC2 6 PHE B 26 GLY B 28 GLY B 30 ASP B 47 SITE 2 AC2 6 TJM B1129 HOH B2008 SITE 1 AC3 4 ARG A 15 TYR A 103 LEU B 105 LEU B 108 SITE 1 AC4 11 ILE A 2 GLY A 28 LEU A 29 GLY A 30 SITE 2 AC4 11 ASP A 47 LYS A 61 GLN A 72 CA A 200 SITE 3 AC4 11 TJM A1130 HOH A2027 HOH A2067 SITE 1 AC5 11 LEU B 29 HIS B 46 ASP B 47 TYR B 50 SITE 2 AC5 11 LYS B 61 GLN B 72 SER B 73 ASN B 96 SITE 3 AC5 11 TJM B1129 HOH B2008 HOH B2045 SITE 1 AC6 5 PRO A 78 ALA A 79 LEU B 75 CYS B 76 SITE 2 AC6 5 GLN B 92 SITE 1 AC7 4 CYS A 76 GLN A 92 PRO B 78 ALA B 79 SITE 1 AC8 5 LYS B 22 GLY B 24 CYS B 27 GLY B 28 SITE 2 AC8 5 LEU B 29 SITE 1 AC9 7 GLY A 24 CYS A 25 PHE A 26 CYS A 27 SITE 2 AC9 7 GLY A 28 LEU A 29 GLY A 30 SITE 1 BC1 6 GLU A 54 SER A 59 PRO A 60 LYS A 61 SITE 2 BC1 6 LEU A 75 HOH A2055 SITE 1 BC2 4 ASP A 47 TYR A 50 THR A 51 GLU A 54 SITE 1 BC3 4 ARG A 36 TYR A 107 TYR A 110 GLY B 7 SITE 1 BC4 11 LEU A 5 PRO A 17 TYR A 20 PHE A 26 SITE 2 BC4 11 GLY A 28 CYS A 43 HIS A 46 ASP A 47 SITE 3 BC4 11 CA A 200 1PE A1125 HOH A2068 SITE 1 BC5 14 ILE B 2 LEU B 5 ALA B 6 PRO B 17 SITE 2 BC5 14 TYR B 20 MET B 21 PHE B 26 GLY B 28 SITE 3 BC5 14 CYS B 43 HIS B 46 ASP B 47 ILE B 94 SITE 4 BC5 14 CA B 200 1PE B1125 SITE 1 BC6 5 TRP A 67 GLN A 68 CYS A 69 PEG A1132 SITE 2 BC6 5 HOH A2005 SITE 1 BC7 8 ALA A 6 GLY A 7 GLY A 10 CYS A 11 SITE 2 BC7 8 PEG A1131 ARG B 36 TYR B 107 TYR B 110 SITE 1 BC8 6 SER B 59 PRO B 60 LYS B 61 VAL B 74 SITE 2 BC8 6 GLN B 92 ASN B 96 SITE 1 BC9 7 LEU A 114 LEU B 3 GLU B 4 ARG B 64 SITE 2 BC9 7 TYR B 65 TRP B 67 HOH B2024 SITE 1 CC1 6 ARG A 64 SER A 66 PRO A 78 GLU A 80 SITE 2 CC1 6 GLN B 68 LEU B 75 SITE 1 CC2 4 ALA B 38 TRP B 41 CYS B 97 GLN B 112 CRYST1 27.765 86.600 104.187 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.036017 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011547 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009598 0.00000 MTRIX1 1 -0.999900 -0.014540 -0.000161 -5.59200 1 MTRIX2 1 -0.004391 0.291300 0.956600 21.98000 1 MTRIX3 1 -0.013860 0.956500 -0.291400 -29.37000 1