HEADER TRANSFERASE 29-AUG-14 4UYA TITLE STRUCTURE OF MLK4 KINASE DOMAIN WITH ATPGAMMAS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE MLK4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN WITH N-TERMINAL LEUCINE ZIPPER 1, UNP COMPND 5 RESIDUES 115-451; COMPND 6 SYNONYM: MIXED LINEAGE KINASE 4; COMPND 7 EC: 2.7.11.25; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: PROTEIN DEPHOSPHORYLATED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF21 KEYWDS MIXED-LINEAGE KINASE, ATP-BINDING, NUCLEOTIDE-BINDING, KEYWDS 2 PHOSPHOPROTEIN, SERINE/THREONINE-PROTEIN KINASE, SH3 DOMAIN, KEYWDS 3 TRANSFERASE, LEUCINE ZIPPER 1 EXPDTA X-RAY DIFFRACTION AUTHOR J.A.READ,C.BRASSINGTON,H.K.POLLARD,C.PHILLIPS,I.GREEN,R.OVERMANN, AUTHOR 2 M.COLLIER REVDAT 5 10-JAN-24 4UYA 1 REMARK LINK REVDAT 4 24-APR-19 4UYA 1 SOURCE REVDAT 3 02-MAR-16 4UYA 1 JRNL REVDAT 2 16-DEC-15 4UYA 1 JRNL REVDAT 1 30-SEP-15 4UYA 0 JRNL AUTH A.A.MARUSIAK,N.L.STEPHENSON,H.BAIK,E.W.TROTTER,Y.LI,K.BLYTH, JRNL AUTH 2 S.MASON,P.CHAPMAN,L.A.PUTO,J.A.READ,C.BRASSINGTON, JRNL AUTH 3 H.K.POLLARD,C.PHILLIPS,I.GREEN,R.OVERMAN,M.COLLIER, JRNL AUTH 4 E.TESTONI,C.MILLER,T.HUNTER,O.J.SANSOM,J.BROGNARD JRNL TITL RECURRENT MLK4 LOSS-OF-FUNCTION MUTATIONS SUPPRESS JNK JRNL TITL 2 SIGNALING TO PROMOTE COLON TUMORIGENESIS. JRNL REF CANCER RES. V. 76 724 2016 JRNL REFN ISSN 0008-5472 JRNL PMID 26637668 JRNL DOI 10.1158/0008-5472.CAN-15-0701-T REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.6 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 6903 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 353 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.68 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1921 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2418 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1823 REMARK 3 BIN R VALUE (WORKING SET) : 0.2355 REMARK 3 BIN FREE R VALUE : 0.3599 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 98 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2011 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 102.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 17.01330 REMARK 3 B22 (A**2) : -1.86820 REMARK 3 B33 (A**2) : -15.14510 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 11.64240 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.397 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.397 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.909 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.871 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2090 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2859 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 652 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 32 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 308 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2090 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 284 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2357 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.15 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.44 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 24.18 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 16.6583 0.0219 18.6332 REMARK 3 T TENSOR REMARK 3 T11: -0.1272 T22: -0.2559 REMARK 3 T33: -0.3692 T12: 0.0317 REMARK 3 T13: 0.0543 T23: -0.0610 REMARK 3 L TENSOR REMARK 3 L11: 7.8609 L22: 1.6333 REMARK 3 L33: 0.9634 L12: 2.0170 REMARK 3 L13: 1.0670 L23: 0.4806 REMARK 3 S TENSOR REMARK 3 S11: -0.1007 S12: -0.6814 S13: 0.3813 REMARK 3 S21: -0.0408 S22: -0.0153 S23: -0.1127 REMARK 3 S31: -0.1775 S32: 0.0563 S33: 0.1160 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UYA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1290061639. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6917 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 56.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.78000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3DTC REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.50550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.58150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.50550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.58150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 97 REMARK 465 GLY A 98 REMARK 465 HIS A 99 REMARK 465 HIS A 100 REMARK 465 HIS A 101 REMARK 465 HIS A 102 REMARK 465 HIS A 103 REMARK 465 HIS A 104 REMARK 465 GLY A 105 REMARK 465 GLY A 106 REMARK 465 GLY A 107 REMARK 465 GLU A 108 REMARK 465 ASN A 109 REMARK 465 LEU A 110 REMARK 465 TYR A 111 REMARK 465 PHE A 112 REMARK 465 GLN A 113 REMARK 465 GLY A 114 REMARK 465 GLY A 133 REMARK 465 GLY A 134 REMARK 465 PHE A 135 REMARK 465 ARG A 154 REMARK 465 GLN A 155 REMARK 465 ASP A 156 REMARK 465 PRO A 157 REMARK 465 GLU A 158 REMARK 465 GLN A 159 REMARK 465 ASP A 160 REMARK 465 ALA A 161 REMARK 465 ALA A 162 REMARK 465 ALA A 163 REMARK 465 ASP A 278 REMARK 465 LEU A 292 REMARK 465 ALA A 293 REMARK 465 ARG A 294 REMARK 465 GLU A 295 REMARK 465 TRP A 296 REMARK 465 HIS A 297 REMARK 465 ARG A 298 REMARK 465 THR A 299 REMARK 465 THR A 300 REMARK 465 LYS A 301 REMARK 465 MET A 302 REMARK 465 ALA A 303 REMARK 465 THR A 304 REMARK 465 ALA A 305 REMARK 465 GLY A 306 REMARK 465 ILE A 401 REMARK 465 GLU A 402 REMARK 465 GLY A 403 REMARK 465 ALA A 404 REMARK 465 VAL A 405 REMARK 465 GLU A 438 REMARK 465 LEU A 439 REMARK 465 ARG A 440 REMARK 465 SER A 441 REMARK 465 ARG A 442 REMARK 465 GLU A 443 REMARK 465 GLU A 444 REMARK 465 GLU A 445 REMARK 465 LEU A 446 REMARK 465 THR A 447 REMARK 465 ARG A 448 REMARK 465 ALA A 449 REMARK 465 ALA A 450 REMARK 465 LEU A 451 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 ARG A 123 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 LYS A 127 CG CD CE NZ REMARK 470 GLU A 128 CD OE1 OE2 REMARK 470 ILE A 130 CG1 CG2 CD1 REMARK 470 GLN A 137 CD OE1 NE2 REMARK 470 LYS A 151 CG CD CE NZ REMARK 470 GLU A 166 CG CD OE1 OE2 REMARK 470 SER A 167 OG REMARK 470 ARG A 169 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 170 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 171 CG CD OE1 OE2 REMARK 470 ARG A 173 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 174 CG CD1 CD2 REMARK 470 PHE A 175 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 192 CG CD OE1 NE2 REMARK 470 GLN A 193 CD OE1 NE2 REMARK 470 ARG A 230 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 231 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 253 CG CD OE1 OE2 REMARK 470 ILE A 259 CG1 CG2 CD1 REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 ASP A 279 CG OD1 OD2 REMARK 470 ARG A 345 CD NE CZ NH1 NH2 REMARK 470 LYS A 360 CG CD CE NZ REMARK 470 THR A 368 OG1 CG2 REMARK 470 GLU A 371 CG CD OE1 OE2 REMARK 470 LYS A 375 CG CD CE NZ REMARK 470 LYS A 378 CG CD CE NZ REMARK 470 GLU A 379 CG CD OE1 OE2 REMARK 470 LEU A 393 CG CD1 CD2 REMARK 470 GLU A 396 CG CD OE1 OE2 REMARK 470 GLN A 397 CG CD OE1 NE2 REMARK 470 THR A 399 OG1 CG2 REMARK 470 MET A 406 CG SD CE REMARK 470 THR A 407 OG1 CG2 REMARK 470 GLU A 408 CG CD OE1 OE2 REMARK 470 GLN A 411 CG CD OE1 NE2 REMARK 470 GLU A 412 CG CD OE1 OE2 REMARK 470 SER A 413 OG REMARK 470 LEU A 423 CG CD1 CD2 REMARK 470 GLN A 426 CG CD OE1 NE2 REMARK 470 LYS A 435 CG CD CE NZ REMARK 470 GLU A 436 CG CD OE1 OE2 REMARK 470 LYS A 437 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 192 90.29 -61.08 REMARK 500 ASP A 263 52.26 -172.31 REMARK 500 LYS A 317 -81.26 -62.83 REMARK 500 VAL A 358 -73.62 -96.39 REMARK 500 ASN A 359 34.60 -71.05 REMARK 500 LYS A 360 40.79 38.71 REMARK 500 THR A 407 -70.97 61.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER (AGS): ALSO REMARK 600 KNOWN AS ATPGAMMAS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1439 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 268 OD1 REMARK 620 2 AGS A1438 O3G 77.7 REMARK 620 3 AGS A1438 O2A 74.8 94.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1440 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 AGS A1438 PG REMARK 620 2 AGS A1438 O3G 32.9 REMARK 620 3 HOH A2039 O 130.1 137.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AGS A 1438 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1439 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1440 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UY9 RELATED DB: PDB REMARK 900 STRUCTURE OF MLK1 KINASE DOMAIN WITH LEUCINE ZIPPER 1 REMARK 999 REMARK 999 SEQUENCE REMARK 999 A214G AND LOOP DELETION OF 215-229 TO REMOVE KINASE INSERT REMARK 999 DOMAIN S303A AND T307A TO PREVENT ACTIVATION LOOP REMARK 999 PHOSPHORYLATION DBREF 4UYA A 115 451 UNP Q5TCX8 M3KL4_HUMAN 115 451 SEQADV 4UYA MET A 97 UNP Q5TCX8 EXPRESSION TAG SEQADV 4UYA GLY A 98 UNP Q5TCX8 EXPRESSION TAG SEQADV 4UYA HIS A 99 UNP Q5TCX8 EXPRESSION TAG SEQADV 4UYA HIS A 100 UNP Q5TCX8 EXPRESSION TAG SEQADV 4UYA HIS A 101 UNP Q5TCX8 EXPRESSION TAG SEQADV 4UYA HIS A 102 UNP Q5TCX8 EXPRESSION TAG SEQADV 4UYA HIS A 103 UNP Q5TCX8 EXPRESSION TAG SEQADV 4UYA HIS A 104 UNP Q5TCX8 EXPRESSION TAG SEQADV 4UYA GLY A 105 UNP Q5TCX8 EXPRESSION TAG SEQADV 4UYA GLY A 106 UNP Q5TCX8 EXPRESSION TAG SEQADV 4UYA GLY A 107 UNP Q5TCX8 EXPRESSION TAG SEQADV 4UYA GLU A 108 UNP Q5TCX8 EXPRESSION TAG SEQADV 4UYA ASN A 109 UNP Q5TCX8 EXPRESSION TAG SEQADV 4UYA LEU A 110 UNP Q5TCX8 EXPRESSION TAG SEQADV 4UYA TYR A 111 UNP Q5TCX8 EXPRESSION TAG SEQADV 4UYA PHE A 112 UNP Q5TCX8 EXPRESSION TAG SEQADV 4UYA GLN A 113 UNP Q5TCX8 EXPRESSION TAG SEQADV 4UYA GLY A 114 UNP Q5TCX8 EXPRESSION TAG SEQADV 4UYA GLY A 214 UNP Q5TCX8 ALA 214 ENGINEERED MUTATION SEQADV 4UYA A UNP Q5TCX8 ALA 215 DELETION SEQADV 4UYA A UNP Q5TCX8 ASN 216 DELETION SEQADV 4UYA A UNP Q5TCX8 ALA 217 DELETION SEQADV 4UYA A UNP Q5TCX8 ALA 218 DELETION SEQADV 4UYA A UNP Q5TCX8 PRO 219 DELETION SEQADV 4UYA A UNP Q5TCX8 ASP 220 DELETION SEQADV 4UYA A UNP Q5TCX8 PRO 221 DELETION SEQADV 4UYA A UNP Q5TCX8 ARG 222 DELETION SEQADV 4UYA A UNP Q5TCX8 ALA 223 DELETION SEQADV 4UYA A UNP Q5TCX8 PRO 224 DELETION SEQADV 4UYA A UNP Q5TCX8 GLY 225 DELETION SEQADV 4UYA A UNP Q5TCX8 PRO 226 DELETION SEQADV 4UYA A UNP Q5TCX8 ARG 227 DELETION SEQADV 4UYA A UNP Q5TCX8 ARG 228 DELETION SEQADV 4UYA A UNP Q5TCX8 ALA 229 DELETION SEQADV 4UYA ALA A 303 UNP Q5TCX8 SER 303 ENGINEERED MUTATION SEQADV 4UYA ALA A 307 UNP Q5TCX8 THR 307 ENGINEERED MUTATION SEQRES 1 A 340 MET GLY HIS HIS HIS HIS HIS HIS GLY GLY GLY GLU ASN SEQRES 2 A 340 LEU TYR PHE GLN GLY SER PRO VAL HIS VAL ALA PHE GLU SEQRES 3 A 340 ARG LEU GLU LEU LYS GLU LEU ILE GLY ALA GLY GLY PHE SEQRES 4 A 340 GLY GLN VAL TYR ARG ALA THR TRP GLN GLY GLN GLU VAL SEQRES 5 A 340 ALA VAL LYS ALA ALA ARG GLN ASP PRO GLU GLN ASP ALA SEQRES 6 A 340 ALA ALA ALA ALA GLU SER VAL ARG ARG GLU ALA ARG LEU SEQRES 7 A 340 PHE ALA MET LEU ARG HIS PRO ASN ILE ILE GLU LEU ARG SEQRES 8 A 340 GLY VAL CYS LEU GLN GLN PRO HIS LEU CYS LEU VAL LEU SEQRES 9 A 340 GLU PHE ALA ARG GLY GLY ALA LEU ASN ARG ALA LEU ALA SEQRES 10 A 340 GLY ARG ARG ILE PRO PRO HIS VAL LEU VAL ASN TRP ALA SEQRES 11 A 340 VAL GLN ILE ALA ARG GLY MET LEU TYR LEU HIS GLU GLU SEQRES 12 A 340 ALA PHE VAL PRO ILE LEU HIS ARG ASP LEU LYS SER SER SEQRES 13 A 340 ASN ILE LEU LEU LEU GLU LYS ILE GLU HIS ASP ASP ILE SEQRES 14 A 340 CYS ASN LYS THR LEU LYS ILE THR ASP PHE GLY LEU ALA SEQRES 15 A 340 ARG GLU TRP HIS ARG THR THR LYS MET ALA THR ALA GLY SEQRES 16 A 340 ALA TYR ALA TRP MET ALA PRO GLU VAL ILE LYS SER SER SEQRES 17 A 340 LEU PHE SER LYS GLY SER ASP ILE TRP SER TYR GLY VAL SEQRES 18 A 340 LEU LEU TRP GLU LEU LEU THR GLY GLU VAL PRO TYR ARG SEQRES 19 A 340 GLY ILE ASP GLY LEU ALA VAL ALA TYR GLY VAL ALA VAL SEQRES 20 A 340 ASN LYS LEU THR LEU PRO ILE PRO SER THR CYS PRO GLU SEQRES 21 A 340 PRO PHE ALA LYS LEU MET LYS GLU CYS TRP GLN GLN ASP SEQRES 22 A 340 PRO HIS ILE ARG PRO SER PHE ALA LEU ILE LEU GLU GLN SEQRES 23 A 340 LEU THR ALA ILE GLU GLY ALA VAL MET THR GLU MET PRO SEQRES 24 A 340 GLN GLU SER PHE HIS SER MET GLN ASP ASP TRP LYS LEU SEQRES 25 A 340 GLU ILE GLN GLN MET PHE ASP GLU LEU ARG THR LYS GLU SEQRES 26 A 340 LYS GLU LEU ARG SER ARG GLU GLU GLU LEU THR ARG ALA SEQRES 27 A 340 ALA LEU HET AGS A1438 31 HET MG A1439 1 HET MG A1440 1 HETNAM AGS PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETSYN AGS ATP-GAMMA-S; ADENOSINE 5'-(3-THIOTRIPHOSPHATE); HETSYN 2 AGS ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE); ADENOSINE-5'- HETSYN 3 AGS DIPHOSPHATE MONOTHIOPHOSPHATE FORMUL 2 AGS C10 H16 N5 O12 P3 S FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *39(H2 O) HELIX 1 1 ALA A 120 LEU A 124 5 5 HELIX 2 2 ALA A 164 ALA A 176 1 13 HELIX 3 3 ALA A 207 ALA A 213 1 7 HELIX 4 4 PRO A 233 GLU A 253 1 21 HELIX 5 5 LYS A 265 SER A 267 5 3 HELIX 6 6 ALA A 312 LYS A 317 1 6 HELIX 7 7 SER A 322 GLY A 340 1 19 HELIX 8 8 ASP A 348 VAL A 358 1 11 HELIX 9 9 PRO A 372 TRP A 381 1 10 HELIX 10 10 SER A 390 ALA A 400 1 11 HELIX 11 11 PRO A 410 LYS A 437 1 28 SHEET 1 AA 6 VAL A 117 HIS A 118 0 SHEET 2 AA 6 LEU A 186 CYS A 190 1 O ARG A 187 N VAL A 117 SHEET 3 AA 6 CYS A 197 GLU A 201 -1 O CYS A 197 N CYS A 190 SHEET 4 AA 6 GLN A 146 ALA A 152 -1 O ALA A 149 N LEU A 200 SHEET 5 AA 6 VAL A 138 TRP A 143 -1 O TYR A 139 N VAL A 150 SHEET 6 AA 6 GLU A 125 LEU A 129 -1 O GLU A 125 N THR A 142 SHEET 1 AB 2 ILE A 269 LEU A 271 0 SHEET 2 AB 2 LEU A 285 ILE A 287 -1 O LYS A 286 N LEU A 270 LINK OD1 ASN A 268 MG MG A1439 1555 1555 2.11 LINK O3G AGS A1438 MG MG A1439 1555 1555 3.00 LINK O2A AGS A1438 MG MG A1439 1555 1555 2.75 LINK PG AGS A1438 MG MG A1440 1555 1555 2.73 LINK O3G AGS A1438 MG MG A1440 1555 1555 2.26 LINK MG MG A1440 O HOH A2039 1555 1555 2.96 CISPEP 1 GLN A 193 PRO A 194 0 2.64 CISPEP 2 GLU A 371 PRO A 372 0 4.16 SITE 1 AC1 14 VAL A 138 ALA A 149 ILE A 184 LEU A 200 SITE 2 AC1 14 GLU A 201 ALA A 203 ASP A 263 LYS A 265 SITE 3 AC1 14 ASN A 268 LEU A 270 ASP A 289 MG A1439 SITE 4 AC1 14 MG A1440 HOH A2038 SITE 1 AC2 4 LYS A 265 ASN A 268 AGS A1438 MG A1440 SITE 1 AC3 4 LYS A 265 AGS A1438 MG A1439 HOH A2039 CRYST1 113.011 35.163 70.022 90.00 96.33 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008849 0.000000 0.000982 0.00000 SCALE2 0.000000 0.028439 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014369 0.00000