HEADER ION-TRANSPORT PROTEIN 29-AUG-14 4UYC OBSLTE 18-MAR-15 4UYC 5AFP TITLE NEURONAL CALCIUM SENSOR-1 (NCS-1)FROM RATTUS NORVEGICUS TITLE 2 COMPLEX WITH RHODOPSIN KINASE PEPTIDE FROM HOMO SAPIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURONAL CALCIUM SENSOR 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NEURONAL CALCIUM SENSOR-1, NCS-1, FREQUENIN HOMOLOG, COMPND 5 FREQUENIN-LIKE PROTEIN, FREQUENIN-LIKE UBIQUITOUS PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RHODOPSIN KINASE; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: RESIDUES 1-25; COMPND 11 SYNONYM: RK, G PROTEIN-COUPLED RECEPTOR KINASE 1; COMPND 12 EC: 2.7.11.14 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 CELL: NEURON; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET-M11; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS ION-TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.SALEEM,V.KARUPPIAH,S.PANDALANENI,R.BURGOYNE,J.P.DERRICK,L.Y.LIAN REVDAT 2 18-MAR-15 4UYC 1 OBSLTE REVDAT 1 03-DEC-14 4UYC 0 JRNL AUTH M.SALEEM,V.KARUPPIAH,S.PANDALANENI,R.BURGOYNE,J.P.DERRICK, JRNL AUTH 2 L.Y.LIAN JRNL TITL NEURONAL CALCIUM SENSOR (NCS-1)FROM RATTUS NORVEGICUS IN JRNL TITL 2 COMPLEX WITH RHODOPSIN KINASE PEPTIDE FROM HOMO SAPIENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.16 REMARK 3 NUMBER OF REFLECTIONS : 17513 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.22022 REMARK 3 R VALUE (WORKING SET) : 0.21704 REMARK 3 FREE R VALUE : 0.27852 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.2 REMARK 3 FREE R VALUE TEST SET COUNT : 956 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.300 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.360 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1206 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.271 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.374 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3055 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.758 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15 REMARK 3 B22 (A**2) : 2.22 REMARK 3 B33 (A**2) : -2.06 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.26 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.396 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.275 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.220 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.974 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3115 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4193 ; 1.747 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 371 ; 6.486 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;35.470 ;25.337 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 560 ;21.020 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;21.009 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 451 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2370 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 4UYC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-SEP-14. REMARK 100 THE PDBE ID CODE IS EBI-61296. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.900 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 6M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18488 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.30 REMARK 200 RESOLUTION RANGE LOW (A) : 48.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.3 REMARK 200 R MERGE (I) : 0.04 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.80 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.6 REMARK 200 R MERGE FOR SHELL (I) : 0.37 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2YOU REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.6 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.12M ALCOHOLS (1,6-HEXANEDIOL; REMARK 280 1-BUTANOL;1,PROPANEDIOL(RACEMIC); 2-PROPONOL; 1, REMARK 280 4-BUTANEDIOL; 1,3-PROPANEDIOL); 0.1M BUFFER 2 (SODIUM REMARK 280 HEPES; MOPS ACID PH 7.5); P550MME_P20K 30%. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.84500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 ASN A 5 REMARK 465 SER A 6 REMARK 465 THR A 135 REMARK 465 VAL A 136 REMARK 465 TYR A 186 REMARK 465 ASP A 187 REMARK 465 GLY A 188 REMARK 465 LEU A 189 REMARK 465 VAL A 190 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 LYS B 3 REMARK 465 SER B 4 REMARK 465 ASN B 5 REMARK 465 THR B 135 REMARK 465 VAL B 136 REMARK 465 GLU B 137 REMARK 465 LEU B 138 REMARK 465 LEU B 185 REMARK 465 TYR B 186 REMARK 465 ASP B 187 REMARK 465 GLY B 188 REMARK 465 LEU B 189 REMARK 465 VAL B 190 REMARK 465 MET C 1 REMARK 465 ASP C 2 REMARK 465 PHE C 3 REMARK 465 GLY C 4 REMARK 465 SER C 5 REMARK 465 ALA C 18 REMARK 465 ARG C 19 REMARK 465 GLY C 20 REMARK 465 SER C 21 REMARK 465 PHE C 22 REMARK 465 ASP C 23 REMARK 465 ALA C 24 REMARK 465 SER C 25 REMARK 465 MET D 1 REMARK 465 ASP D 2 REMARK 465 PHE D 3 REMARK 465 GLY D 4 REMARK 465 ALA D 18 REMARK 465 ARG D 19 REMARK 465 GLY D 20 REMARK 465 SER D 21 REMARK 465 PHE D 22 REMARK 465 ASP D 23 REMARK 465 ALA D 24 REMARK 465 SER D 25 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 118 OD1 ASP A 150 1.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP B 30 CD2 TRP B 30 CE2 0.076 REMARK 500 TRP B 103 CD2 TRP B 103 CE2 0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 57 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 184 32.42 -98.06 REMARK 500 LEU B 8 142.08 98.32 REMARK 500 ASN B 159 13.50 -155.24 REMARK 500 ALA B 160 22.54 34.59 REMARK 500 ASP B 161 2.89 -66.63 REMARK 500 ILE C 16 2.78 -68.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ILE B 152 24.7 L L OUTSIDE RANGE REMARK 500 ALA B 160 24.4 L L OUTSIDE RANGE REMARK 500 VAL C 9 24.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 200 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 73 OD1 REMARK 620 2 ASN A 75 OD1 79.7 REMARK 620 3 GLU A 84 OE2 86.4 73.4 REMARK 620 4 ASP A 77 OD1 82.3 76.4 149.2 REMARK 620 5 ARG A 79 O 84.0 156.4 122.7 84.6 REMARK 620 6 HOH A2010 O 168.3 93.9 101.2 86.7 99.0 REMARK 620 7 GLU A 84 OE1 102.7 125.7 53.0 157.8 74.5 89.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 200 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 73 OD1 REMARK 620 2 ARG B 79 O 89.1 REMARK 620 3 ASN B 75 OD1 83.3 166.0 REMARK 620 4 ASP B 77 OD1 88.0 83.2 84.9 REMARK 620 5 GLU B 84 OE1 104.5 77.7 115.6 156.8 REMARK 620 6 GLU B 84 OE2 89.5 130.0 61.9 146.8 54.5 REMARK 620 7 HOH B2004 O 174.5 92.5 94.1 87.0 80.9 93.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 111 OD1 REMARK 620 2 ASP A 113 OD1 75.9 REMARK 620 3 HOH A2015 O 93.9 78.5 REMARK 620 4 ASP A 109 OD1 83.8 90.0 168.5 REMARK 620 5 TYR A 115 O 149.7 75.3 89.5 86.9 REMARK 620 6 GLU A 120 OE1 132.6 145.3 79.8 110.0 77.7 REMARK 620 7 GLU A 120 OE2 83.1 155.5 90.6 100.3 127.0 50.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 120 OE1 REMARK 620 2 TYR B 115 O 78.0 REMARK 620 3 HOH B2007 O 88.7 100.7 REMARK 620 4 ASP B 109 OD1 104.8 83.5 166.5 REMARK 620 5 ASP B 111 OD1 119.0 157.4 94.7 78.0 REMARK 620 6 ASP B 113 OD1 160.6 87.3 81.5 85.8 78.7 REMARK 620 7 GLU B 120 OE2 53.2 128.0 95.5 91.9 65.9 144.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 161 OD1 REMARK 620 2 ASN A 159 OD1 81.0 REMARK 620 3 LYS A 163 O 87.4 168.0 REMARK 620 4 GLU A 168 OE1 157.2 110.8 79.3 REMARK 620 5 GLU A 168 OE2 147.2 67.5 124.5 51.9 REMARK 620 6 ASP A 157 OD1 79.9 86.6 94.2 119.1 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 159 OD1 REMARK 620 2 ASP B 157 OD1 76.7 REMARK 620 3 GLU B 168 OE1 130.0 112.5 REMARK 620 4 GLU B 168 OE2 89.6 78.1 49.1 REMARK 620 5 ASP B 161 OD1 77.0 82.1 150.6 158.2 REMARK 620 6 LYS B 163 O 150.1 80.0 76.6 103.7 81.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 17 O REMARK 620 2 THR A 20 O 90.3 REMARK 620 3 PHE A 22 O 111.7 123.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 202 DBREF 4UYC A 1 190 UNP P62168 NCS1_RAT 1 190 DBREF 4UYC B 1 190 UNP P62168 NCS1_RAT 1 190 DBREF 4UYC C 1 25 UNP Q15835 RK_HUMAN 1 25 DBREF 4UYC D 1 25 UNP Q15835 RK_HUMAN 1 25 SEQADV 4UYC ALA C 24 UNP Q15835 GLY 24 CONFLICT SEQADV 4UYC ALA D 24 UNP Q15835 GLY 24 CONFLICT SEQRES 1 A 190 MET GLY LYS SER ASN SER LYS LEU LYS PRO GLU VAL VAL SEQRES 2 A 190 GLU GLU LEU THR ARG LYS THR TYR PHE THR GLU LYS GLU SEQRES 3 A 190 VAL GLN GLN TRP TYR LYS GLY PHE ILE LYS ASP CYS PRO SEQRES 4 A 190 SER GLY GLN LEU ASP ALA ALA GLY PHE GLN LYS ILE TYR SEQRES 5 A 190 LYS GLN PHE PHE PRO PHE GLY ASP PRO THR LYS PHE ALA SEQRES 6 A 190 THR PHE VAL PHE ASN VAL PHE ASP GLU ASN LYS ASP GLY SEQRES 7 A 190 ARG ILE GLU PHE SER GLU PHE ILE GLN ALA LEU SER VAL SEQRES 8 A 190 THR SER ARG GLY THR LEU ASP GLU LYS LEU ARG TRP ALA SEQRES 9 A 190 PHE LYS LEU TYR ASP LEU ASP ASN ASP GLY TYR ILE THR SEQRES 10 A 190 ARG ASN GLU MET LEU ASP ILE VAL ASP ALA ILE TYR GLN SEQRES 11 A 190 MET VAL GLY ASN THR VAL GLU LEU PRO GLU GLU GLU ASN SEQRES 12 A 190 THR PRO GLU LYS ARG VAL ASP ARG ILE PHE ALA MET MET SEQRES 13 A 190 ASP LYS ASN ALA ASP GLY LYS LEU THR LEU GLN GLU PHE SEQRES 14 A 190 GLN GLU GLY SER LYS ALA ASP PRO SER ILE VAL GLN ALA SEQRES 15 A 190 LEU SER LEU TYR ASP GLY LEU VAL SEQRES 1 B 190 MET GLY LYS SER ASN SER LYS LEU LYS PRO GLU VAL VAL SEQRES 2 B 190 GLU GLU LEU THR ARG LYS THR TYR PHE THR GLU LYS GLU SEQRES 3 B 190 VAL GLN GLN TRP TYR LYS GLY PHE ILE LYS ASP CYS PRO SEQRES 4 B 190 SER GLY GLN LEU ASP ALA ALA GLY PHE GLN LYS ILE TYR SEQRES 5 B 190 LYS GLN PHE PHE PRO PHE GLY ASP PRO THR LYS PHE ALA SEQRES 6 B 190 THR PHE VAL PHE ASN VAL PHE ASP GLU ASN LYS ASP GLY SEQRES 7 B 190 ARG ILE GLU PHE SER GLU PHE ILE GLN ALA LEU SER VAL SEQRES 8 B 190 THR SER ARG GLY THR LEU ASP GLU LYS LEU ARG TRP ALA SEQRES 9 B 190 PHE LYS LEU TYR ASP LEU ASP ASN ASP GLY TYR ILE THR SEQRES 10 B 190 ARG ASN GLU MET LEU ASP ILE VAL ASP ALA ILE TYR GLN SEQRES 11 B 190 MET VAL GLY ASN THR VAL GLU LEU PRO GLU GLU GLU ASN SEQRES 12 B 190 THR PRO GLU LYS ARG VAL ASP ARG ILE PHE ALA MET MET SEQRES 13 B 190 ASP LYS ASN ALA ASP GLY LYS LEU THR LEU GLN GLU PHE SEQRES 14 B 190 GLN GLU GLY SER LYS ALA ASP PRO SER ILE VAL GLN ALA SEQRES 15 B 190 LEU SER LEU TYR ASP GLY LEU VAL SEQRES 1 C 25 MET ASP PHE GLY SER LEU GLU THR VAL VAL ALA ASN SER SEQRES 2 C 25 ALA PHE ILE ALA ALA ARG GLY SER PHE ASP ALA SER SEQRES 1 D 25 MET ASP PHE GLY SER LEU GLU THR VAL VAL ALA ASN SER SEQRES 2 D 25 ALA PHE ILE ALA ALA ARG GLY SER PHE ASP ALA SER HET CA A 200 1 HET CA A 201 1 HET CA A 202 1 HET NA A 203 1 HET NA A 204 1 HET CA B 200 1 HET CA B 201 1 HET CA B 202 1 HETNAM CA CALCIUM ION HETNAM NA SODIUM ION FORMUL 5 CA 6(CA 2+) FORMUL 6 NA 2(NA 1+) FORMUL 7 HOH *34(H2 O) HELIX 1 1 LYS A 9 LYS A 19 1 11 HELIX 2 2 THR A 23 CYS A 38 1 16 HELIX 3 3 ASP A 44 PHE A 56 1 13 HELIX 4 4 PRO A 61 ASP A 73 1 13 HELIX 5 5 PHE A 82 GLY A 95 1 14 HELIX 6 6 THR A 96 ASP A 109 1 14 HELIX 7 7 ARG A 118 GLY A 133 1 16 HELIX 8 8 PRO A 139 ASN A 143 5 5 HELIX 9 9 THR A 144 ASP A 157 1 14 HELIX 10 10 THR A 165 ASP A 176 1 12 HELIX 11 11 ASP A 176 LEU A 183 1 8 HELIX 12 12 LYS B 9 LYS B 19 1 11 HELIX 13 13 THR B 23 CYS B 38 1 16 HELIX 14 14 ASP B 44 PHE B 56 1 13 HELIX 15 15 PRO B 61 ASP B 73 1 13 HELIX 16 16 PHE B 82 GLY B 95 1 14 HELIX 17 17 THR B 96 ASP B 109 1 14 HELIX 18 18 ARG B 118 VAL B 132 1 15 HELIX 19 19 PRO B 139 ASN B 143 5 5 HELIX 20 20 THR B 144 ASP B 157 1 14 HELIX 21 21 THR B 165 ASP B 176 1 12 HELIX 22 22 ASP B 176 LEU B 183 1 8 HELIX 23 23 LEU C 6 PHE C 15 1 10 HELIX 24 24 LEU D 6 PHE D 15 1 10 SHEET 1 AA 2 GLN A 42 LEU A 43 0 SHEET 2 AA 2 ILE A 80 GLU A 81 -1 O ILE A 80 N LEU A 43 SHEET 1 AB 2 ILE A 116 THR A 117 0 SHEET 2 AB 2 LYS A 163 LEU A 164 -1 O LEU A 164 N ILE A 116 SHEET 1 BA 2 GLN B 42 LEU B 43 0 SHEET 2 BA 2 ILE B 80 GLU B 81 -1 O ILE B 80 N LEU B 43 SHEET 1 BB 2 ILE B 116 THR B 117 0 SHEET 2 BB 2 LYS B 163 LEU B 164 -1 O LEU B 164 N ILE B 116 LINK CA CA A 200 OD1 ASP A 73 1555 1555 2.44 LINK CA CA A 200 OD1 ASN A 75 1555 1555 2.36 LINK CA CA A 200 OE2 GLU A 84 1555 1555 2.41 LINK CA CA A 200 OD1 ASP A 77 1555 1555 2.27 LINK CA CA A 200 O ARG A 79 1555 1555 2.36 LINK CA CA A 200 O HOH A2010 1555 1555 2.26 LINK CA CA A 200 OE1 GLU A 84 1555 1555 2.48 LINK CA CA A 201 OD1 ASP A 111 1555 1555 2.44 LINK CA CA A 201 OD1 ASP A 113 1555 1555 2.41 LINK CA CA A 201 O HOH A2015 1555 1555 2.26 LINK CA CA A 201 OD1 ASP A 109 1555 1555 2.18 LINK CA CA A 201 O TYR A 115 1555 1555 2.18 LINK CA CA A 201 OE1 GLU A 120 1555 1555 2.46 LINK CA CA A 201 OE2 GLU A 120 1555 1555 2.66 LINK CA CA A 202 O LYS A 163 1555 1555 2.13 LINK CA CA A 202 OD1 ASN A 159 1555 1555 2.18 LINK CA CA A 202 OD1 ASP A 161 1555 1555 2.35 LINK CA CA A 202 OE1 GLU A 168 1555 1555 2.49 LINK CA CA A 202 OE2 GLU A 168 1555 1555 2.42 LINK CA CA A 202 OD1 ASP A 157 1555 1555 2.36 LINK NA NA A 203 O THR A 17 1555 1555 2.27 LINK NA NA A 203 O PHE A 22 1555 1555 2.40 LINK NA NA A 203 O THR A 20 1555 1555 2.32 LINK NA NA A 204 O ALA A 175 1555 1555 2.41 LINK CA CA B 200 OE2 GLU B 84 1555 1555 2.25 LINK CA CA B 200 OE1 GLU B 84 1555 1555 2.51 LINK CA CA B 200 OD1 ASP B 77 1555 1555 2.49 LINK CA CA B 200 OD1 ASN B 75 1555 1555 2.36 LINK CA CA B 200 O ARG B 79 1555 1555 2.24 LINK CA CA B 200 OD1 ASP B 73 1555 1555 2.35 LINK CA CA B 200 O HOH B2004 1555 1555 2.03 LINK CA CA B 201 OE2 GLU B 120 1555 1555 2.54 LINK CA CA B 201 OD1 ASP B 113 1555 1555 1.96 LINK CA CA B 201 OD1 ASP B 111 1555 1555 2.25 LINK CA CA B 201 OD1 ASP B 109 1555 1555 2.34 LINK CA CA B 201 O HOH B2007 1555 1555 2.40 LINK CA CA B 201 O TYR B 115 1555 1555 2.16 LINK CA CA B 201 OE1 GLU B 120 1555 1555 2.27 LINK CA CA B 202 O LYS B 163 1555 1555 2.33 LINK CA CA B 202 OD1 ASP B 161 1555 1555 2.40 LINK CA CA B 202 OE2 GLU B 168 1555 1555 2.64 LINK CA CA B 202 OE1 GLU B 168 1555 1555 2.59 LINK CA CA B 202 OD1 ASP B 157 1555 1555 2.25 LINK CA CA B 202 OD1 ASN B 159 1555 1555 2.44 SITE 1 AC1 6 ASP A 73 ASN A 75 ASP A 77 ARG A 79 SITE 2 AC1 6 GLU A 84 HOH A2010 SITE 1 AC2 6 ASP A 109 ASP A 111 ASP A 113 TYR A 115 SITE 2 AC2 6 GLU A 120 HOH A2015 SITE 1 AC3 5 ASP A 157 ASN A 159 ASP A 161 LYS A 163 SITE 2 AC3 5 GLU A 168 SITE 1 AC4 3 THR A 17 THR A 20 PHE A 22 SITE 1 AC5 2 ALA A 175 PRO A 177 SITE 1 AC6 6 ASP B 73 ASN B 75 ASP B 77 ARG B 79 SITE 2 AC6 6 GLU B 84 HOH B2004 SITE 1 AC7 6 ASP B 109 ASP B 111 ASP B 113 TYR B 115 SITE 2 AC7 6 GLU B 120 HOH B2007 SITE 1 AC8 5 ASP B 157 ASN B 159 ASP B 161 LYS B 163 SITE 2 AC8 5 GLU B 168 CRYST1 40.690 93.690 55.710 90.00 92.25 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024576 0.000000 0.000966 0.00000 SCALE2 0.000000 0.010673 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017964 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 18.90000 1 MTRIX2 1 0.000000 -1.000000 0.000000 -22.60000 1 MTRIX3 1 0.000000 0.000000 -1.000000 28.60000 1