HEADER HYDROLASE 04-SEP-14 4UZ2 TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL LYSM DOMAINS FROM THE PUTATIVE TITLE 2 NLPC/P60 D,L ENDOPEPTIDASE FROM T. THERMOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL WALL-BINDING ENDOPEPTIDASE-RELATED PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: LYSM DOMAIN, RESIDUES 15-114; COMPND 5 SYNONYM: P60_TTH; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB8; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET32 EKLIC KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.E.M.M.WONG,M.BLAISE REVDAT 5 08-MAY-24 4UZ2 1 REMARK REVDAT 4 17-JAN-18 4UZ2 1 REMARK REVDAT 3 25-MAR-15 4UZ2 1 JRNL REVDAT 2 11-MAR-15 4UZ2 1 JRNL REVDAT 1 14-JAN-15 4UZ2 0 JRNL AUTH J.E.M.M.WONG,S.R.MIDTGAARD,K.GYSEL,M.B.THYGESEN, JRNL AUTH 2 K.K.SORENSEN,K.J.JENSEN,J.STOUGAARD,S.THIRUP,M.BLAISE JRNL TITL AN INTERMOLECULAR BINDING MECHANISM INVOLVING MULTIPLE LYSM JRNL TITL 2 DOMAINS MEDIATES CARBOHYDRATE RECOGNITION BY AN JRNL TITL 3 ENDOPEPTIDASE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 592 2015 JRNL REFN ISSN 0907-4449 JRNL PMID 25760608 JRNL DOI 10.1107/S139900471402793X REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 20657 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7968 - 5.9739 0.97 1421 153 0.1742 0.2267 REMARK 3 2 5.9739 - 4.7634 0.98 1361 145 0.1970 0.2199 REMARK 3 3 4.7634 - 4.1677 0.98 1347 145 0.1705 0.2038 REMARK 3 4 4.1677 - 3.7895 0.99 1330 142 0.1845 0.2287 REMARK 3 5 3.7895 - 3.5195 0.99 1324 142 0.2077 0.2299 REMARK 3 6 3.5195 - 3.3130 0.99 1331 143 0.2231 0.2678 REMARK 3 7 3.3130 - 3.1478 0.99 1328 141 0.2379 0.2945 REMARK 3 8 3.1478 - 3.0113 0.99 1327 143 0.2621 0.3239 REMARK 3 9 3.0113 - 2.8957 1.00 1315 141 0.2567 0.3308 REMARK 3 10 2.8957 - 2.7961 1.00 1318 141 0.2544 0.2868 REMARK 3 11 2.7961 - 2.7089 1.00 1335 143 0.2689 0.3516 REMARK 3 12 2.7089 - 2.6316 1.00 1308 140 0.2802 0.3266 REMARK 3 13 2.6316 - 2.5625 1.00 1300 141 0.2688 0.3253 REMARK 3 14 2.5625 - 2.5001 1.00 1313 139 0.3033 0.3337 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3095 REMARK 3 ANGLE : 0.549 4198 REMARK 3 CHIRALITY : 0.021 493 REMARK 3 PLANARITY : 0.003 546 REMARK 3 DIHEDRAL : 11.153 1184 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 16 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.9331 11.5184 -20.0158 REMARK 3 T TENSOR REMARK 3 T11: 0.6924 T22: 0.7331 REMARK 3 T33: 0.8830 T12: 0.1786 REMARK 3 T13: -0.2309 T23: -0.1779 REMARK 3 L TENSOR REMARK 3 L11: 4.0443 L22: 8.6327 REMARK 3 L33: 3.1278 L12: -5.1562 REMARK 3 L13: 0.5358 L23: 1.8524 REMARK 3 S TENSOR REMARK 3 S11: -0.3613 S12: -0.0372 S13: 1.8334 REMARK 3 S21: -0.8980 S22: -0.6573 S23: 1.8649 REMARK 3 S31: -0.9010 S32: -1.4469 S33: 0.8449 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 27 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.9427 18.9976 -17.6589 REMARK 3 T TENSOR REMARK 3 T11: 0.9305 T22: 0.7567 REMARK 3 T33: 1.3125 T12: 0.2208 REMARK 3 T13: -0.3548 T23: -0.1756 REMARK 3 L TENSOR REMARK 3 L11: 5.6143 L22: 4.0061 REMARK 3 L33: 1.5928 L12: -2.5046 REMARK 3 L13: 0.4842 L23: 0.7429 REMARK 3 S TENSOR REMARK 3 S11: -0.7325 S12: 0.1983 S13: 0.9961 REMARK 3 S21: -0.9265 S22: -0.3480 S23: 1.8920 REMARK 3 S31: -0.4110 S32: -0.6166 S33: 1.0075 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 65 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3815 16.0308 -11.4676 REMARK 3 T TENSOR REMARK 3 T11: 0.5329 T22: 0.4724 REMARK 3 T33: 0.3271 T12: 0.1410 REMARK 3 T13: 0.1058 T23: 0.0314 REMARK 3 L TENSOR REMARK 3 L11: 5.3735 L22: 5.5433 REMARK 3 L33: 6.2063 L12: 0.9298 REMARK 3 L13: 2.1263 L23: -1.8547 REMARK 3 S TENSOR REMARK 3 S11: -0.3382 S12: 0.4241 S13: -0.1352 REMARK 3 S21: -0.8872 S22: 0.2638 S23: -0.1083 REMARK 3 S31: -0.0468 S32: 0.3803 S33: 0.0529 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 94 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8148 18.1932 -7.8598 REMARK 3 T TENSOR REMARK 3 T11: 0.4425 T22: 0.4941 REMARK 3 T33: 0.3720 T12: 0.2430 REMARK 3 T13: 0.1493 T23: 0.0414 REMARK 3 L TENSOR REMARK 3 L11: 5.8911 L22: 8.1404 REMARK 3 L33: 6.8019 L12: 1.3314 REMARK 3 L13: -0.4379 L23: -2.2724 REMARK 3 S TENSOR REMARK 3 S11: 0.1932 S12: 0.2968 S13: 0.2305 REMARK 3 S21: -0.2629 S22: -0.1019 S23: -0.3910 REMARK 3 S31: -0.1040 S32: 0.2866 S33: -0.0947 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 16 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0778 21.6219 -19.0916 REMARK 3 T TENSOR REMARK 3 T11: 0.8937 T22: 0.9191 REMARK 3 T33: 0.8043 T12: -0.2079 REMARK 3 T13: -0.1009 T23: 0.0492 REMARK 3 L TENSOR REMARK 3 L11: 5.5157 L22: 2.2172 REMARK 3 L33: 5.6475 L12: 0.0912 REMARK 3 L13: -2.2749 L23: -1.6643 REMARK 3 S TENSOR REMARK 3 S11: 0.0851 S12: -1.2948 S13: 0.2050 REMARK 3 S21: -0.0575 S22: -0.2389 S23: -0.7055 REMARK 3 S31: -0.3002 S32: 0.7824 S33: 0.1564 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 57 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6056 21.3151 -21.0992 REMARK 3 T TENSOR REMARK 3 T11: 0.5604 T22: 0.6214 REMARK 3 T33: 0.8332 T12: -0.0011 REMARK 3 T13: -0.1317 T23: 0.0357 REMARK 3 L TENSOR REMARK 3 L11: 4.6146 L22: 4.0462 REMARK 3 L33: 6.2597 L12: -4.0291 REMARK 3 L13: 5.3141 L23: -4.4092 REMARK 3 S TENSOR REMARK 3 S11: -1.4755 S12: 0.4409 S13: 2.1830 REMARK 3 S21: 0.3877 S22: -0.8666 S23: -0.8903 REMARK 3 S31: -0.5282 S32: 0.7366 S33: 2.2175 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 65 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0998 20.1139 -28.4238 REMARK 3 T TENSOR REMARK 3 T11: 0.4410 T22: 0.5901 REMARK 3 T33: 0.3237 T12: 0.0289 REMARK 3 T13: 0.0077 T23: 0.0741 REMARK 3 L TENSOR REMARK 3 L11: 4.3401 L22: 4.7868 REMARK 3 L33: 5.2152 L12: 0.9908 REMARK 3 L13: 0.2423 L23: 1.8433 REMARK 3 S TENSOR REMARK 3 S11: -0.2459 S12: -0.5369 S13: 0.0883 REMARK 3 S21: 0.4153 S22: 0.5364 S23: 0.2186 REMARK 3 S31: 0.1331 S32: -0.5346 S33: -0.2905 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 94 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4648 21.7185 -33.9026 REMARK 3 T TENSOR REMARK 3 T11: 0.5104 T22: 0.5403 REMARK 3 T33: 0.2870 T12: -0.0589 REMARK 3 T13: 0.0096 T23: 0.0770 REMARK 3 L TENSOR REMARK 3 L11: 8.2383 L22: 6.7676 REMARK 3 L33: 2.3804 L12: -1.6701 REMARK 3 L13: -4.1187 L23: 2.2024 REMARK 3 S TENSOR REMARK 3 S11: 0.3839 S12: -0.0962 S13: 0.4476 REMARK 3 S21: -0.2179 S22: 0.1611 S23: 0.0308 REMARK 3 S31: -0.3429 S32: -0.4370 S33: -0.3558 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 15 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1143 35.0988 -10.1934 REMARK 3 T TENSOR REMARK 3 T11: 0.9969 T22: 0.7359 REMARK 3 T33: 0.7031 T12: 0.1880 REMARK 3 T13: 0.0447 T23: 0.0692 REMARK 3 L TENSOR REMARK 3 L11: 5.6991 L22: 6.0543 REMARK 3 L33: 4.1858 L12: -2.7471 REMARK 3 L13: 2.8413 L23: -3.3228 REMARK 3 S TENSOR REMARK 3 S11: -0.0488 S12: 0.4740 S13: 0.7181 REMARK 3 S21: -0.2016 S22: 0.1823 S23: 0.2958 REMARK 3 S31: -0.8780 S32: -0.2865 S33: -0.1218 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 65 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1863 17.2505 10.4666 REMARK 3 T TENSOR REMARK 3 T11: 0.3604 T22: 0.6408 REMARK 3 T33: 0.3088 T12: 0.1946 REMARK 3 T13: 0.0139 T23: 0.1138 REMARK 3 L TENSOR REMARK 3 L11: 2.9249 L22: 6.0724 REMARK 3 L33: 4.4625 L12: 1.2943 REMARK 3 L13: -0.9553 L23: 2.2786 REMARK 3 S TENSOR REMARK 3 S11: 0.1349 S12: -0.5884 S13: 0.1304 REMARK 3 S21: -0.0913 S22: -0.4944 S23: -0.0137 REMARK 3 S31: -0.1222 S32: 0.3362 S33: 0.3280 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.7245 -10.9472 -50.6104 REMARK 3 T TENSOR REMARK 3 T11: 1.0498 T22: 0.8602 REMARK 3 T33: 0.7427 T12: -0.1789 REMARK 3 T13: -0.0814 T23: 0.2359 REMARK 3 L TENSOR REMARK 3 L11: 3.9757 L22: 2.4390 REMARK 3 L33: 4.7913 L12: 2.7449 REMARK 3 L13: 4.3637 L23: 3.1741 REMARK 3 S TENSOR REMARK 3 S11: 0.4591 S12: -0.2373 S13: -0.5904 REMARK 3 S21: -0.6244 S22: 0.6538 S23: 1.0399 REMARK 3 S31: -0.1904 S32: -1.4712 S33: -1.0092 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.5826 -19.9369 -47.1622 REMARK 3 T TENSOR REMARK 3 T11: 0.7857 T22: 0.9866 REMARK 3 T33: 0.9400 T12: -0.5432 REMARK 3 T13: -0.1228 T23: 0.3306 REMARK 3 L TENSOR REMARK 3 L11: 8.0716 L22: 3.8711 REMARK 3 L33: 6.6110 L12: 0.8848 REMARK 3 L13: 4.3885 L23: 4.4814 REMARK 3 S TENSOR REMARK 3 S11: 0.2821 S12: -0.5858 S13: -1.8843 REMARK 3 S21: -1.0257 S22: 1.3205 S23: 0.1329 REMARK 3 S31: 0.4160 S32: 0.6003 S33: -1.2294 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.2516 -14.5604 -46.4379 REMARK 3 T TENSOR REMARK 3 T11: 0.7433 T22: 1.6175 REMARK 3 T33: 1.4519 T12: -0.3189 REMARK 3 T13: -0.2368 T23: 0.3928 REMARK 3 L TENSOR REMARK 3 L11: 7.2178 L22: 5.1444 REMARK 3 L33: 0.1875 L12: 5.5162 REMARK 3 L13: -0.7624 L23: -0.2646 REMARK 3 S TENSOR REMARK 3 S11: -0.2992 S12: -1.4334 S13: 0.0521 REMARK 3 S21: -0.9758 S22: 0.8061 S23: 1.5779 REMARK 3 S31: 0.9427 S32: -2.5278 S33: -0.3752 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.5388 -11.5703 -40.5921 REMARK 3 T TENSOR REMARK 3 T11: 0.4880 T22: 0.9824 REMARK 3 T33: 0.6762 T12: -0.0487 REMARK 3 T13: 0.0395 T23: 0.2095 REMARK 3 L TENSOR REMARK 3 L11: 3.6513 L22: 7.5013 REMARK 3 L33: 2.5052 L12: -5.0729 REMARK 3 L13: 3.0479 L23: -4.1357 REMARK 3 S TENSOR REMARK 3 S11: 1.4329 S12: 0.0194 S13: 0.3363 REMARK 3 S21: 0.1072 S22: -0.0123 S23: 1.2526 REMARK 3 S31: 0.1464 S32: -0.7126 S33: -1.4023 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4589 -5.4053 -31.8129 REMARK 3 T TENSOR REMARK 3 T11: 0.5067 T22: 0.3223 REMARK 3 T33: 0.2995 T12: -0.0883 REMARK 3 T13: 0.0631 T23: -0.0478 REMARK 3 L TENSOR REMARK 3 L11: 3.8673 L22: 8.5360 REMARK 3 L33: 6.9132 L12: 2.3906 REMARK 3 L13: 3.9414 L23: 2.4626 REMARK 3 S TENSOR REMARK 3 S11: -0.5379 S12: -0.0558 S13: 0.6206 REMARK 3 S21: 0.1535 S22: 0.5490 S23: 0.3359 REMARK 3 S31: -1.1749 S32: 0.5100 S33: -0.1186 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.6756 -0.8634 -27.2246 REMARK 3 T TENSOR REMARK 3 T11: 0.6231 T22: 0.5541 REMARK 3 T33: 0.3583 T12: 0.0954 REMARK 3 T13: 0.0305 T23: -0.0908 REMARK 3 L TENSOR REMARK 3 L11: 6.6393 L22: 5.0444 REMARK 3 L33: 2.0546 L12: 0.6347 REMARK 3 L13: 0.2097 L23: 3.1573 REMARK 3 S TENSOR REMARK 3 S11: 0.3573 S12: 0.3257 S13: 0.9968 REMARK 3 S21: 0.0588 S22: -0.3080 S23: 0.2320 REMARK 3 S31: -1.1287 S32: -0.7638 S33: -0.0740 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.7026 -9.9119 -21.5391 REMARK 3 T TENSOR REMARK 3 T11: 0.5214 T22: 0.8696 REMARK 3 T33: 0.3789 T12: -0.0652 REMARK 3 T13: 0.0946 T23: 0.0361 REMARK 3 L TENSOR REMARK 3 L11: 6.5695 L22: 2.7477 REMARK 3 L33: 2.1435 L12: -0.4589 REMARK 3 L13: 1.8962 L23: 1.9555 REMARK 3 S TENSOR REMARK 3 S11: -0.3234 S12: -1.6708 S13: -0.6181 REMARK 3 S21: 1.4413 S22: 0.0714 S23: 0.5620 REMARK 3 S31: 0.9039 S32: -1.5914 S33: 0.2220 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1355 -10.0653 -23.1632 REMARK 3 T TENSOR REMARK 3 T11: 0.5523 T22: 0.7322 REMARK 3 T33: 0.3545 T12: -0.0081 REMARK 3 T13: 0.0456 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 6.5542 L22: 5.5800 REMARK 3 L33: 4.2923 L12: 1.1436 REMARK 3 L13: -5.2389 L23: -0.0533 REMARK 3 S TENSOR REMARK 3 S11: -0.3444 S12: -0.9200 S13: -0.8048 REMARK 3 S21: 0.6910 S22: -0.0134 S23: -0.0848 REMARK 3 S31: 0.7474 S32: 1.2240 S33: 0.2626 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.7685 -9.0257 -28.8779 REMARK 3 T TENSOR REMARK 3 T11: 0.5161 T22: 0.4742 REMARK 3 T33: 0.5538 T12: -0.0394 REMARK 3 T13: 0.2067 T23: -0.1004 REMARK 3 L TENSOR REMARK 3 L11: 6.8439 L22: 3.6942 REMARK 3 L33: 5.6849 L12: -3.9192 REMARK 3 L13: 1.5133 L23: 0.5474 REMARK 3 S TENSOR REMARK 3 S11: -0.5949 S12: -0.2645 S13: -1.1390 REMARK 3 S21: 1.1054 S22: 0.0179 S23: 1.7312 REMARK 3 S31: 0.1178 S32: -0.7202 S33: 0.5313 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1290061662. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20666 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 11.90 REMARK 200 R MERGE FOR SHELL (I) : 0.81000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28& PEG MME 2000, 0.1M POTASSIUM REMARK 280 THIOCYANATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 61.46500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 61.46500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.40500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 61.46500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 61.46500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.40500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 61.46500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.46500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.40500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 61.46500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.46500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.40500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 15 REMARK 465 GLY C 15 REMARK 465 ALA C 114 REMARK 465 GLY D 15 REMARK 465 GLY D 112 REMARK 465 GLU D 113 REMARK 465 ALA D 114 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 39 OH TYR D 28 6454 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 54 108.00 -58.41 REMARK 500 THR A 84 -163.72 -128.10 REMARK 500 THR C 84 -167.60 -126.38 REMARK 500 THR D 36 -167.80 -126.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UZ3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL LYSM DOMAINS FROM THE PUTATIVE REMARK 900 NLPC/P60 D,L ENDOPEPTIDASE FROM T. THERMOPHILUS BOUND TO N-ACETYL- REMARK 900 CHITOHEXAOSE REMARK 900 RELATED ID: 4XCM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PUTATIVE NLPC/P60 D,L ENDOPEPTIDASE FROM REMARK 900 T. THERMOPHILUS DBREF 4UZ2 A 15 114 UNP Q5SLM7 Q5SLM7_THET8 15 114 DBREF 4UZ2 B 15 114 UNP Q5SLM7 Q5SLM7_THET8 15 114 DBREF 4UZ2 C 15 114 UNP Q5SLM7 Q5SLM7_THET8 15 114 DBREF 4UZ2 D 15 114 UNP Q5SLM7 Q5SLM7_THET8 15 114 SEQRES 1 A 100 GLY GLN ALA THR TYR THR VAL ALA PRO GLY ASP THR LEU SEQRES 2 A 100 TYR SER ILE ALA ARG ARG TYR GLY THR THR VAL GLU GLU SEQRES 3 A 100 LEU MET ARG LEU ASN GLY LEU GLU SER PHE LEU LEU GLN SEQRES 4 A 100 PRO GLY GLN VAL LEU LYS LEU PRO SER ARG GLU ARG THR SEQRES 5 A 100 HIS VAL VAL ALA PRO GLY ASP THR LEU PHE SER LEU ALA SEQRES 6 A 100 ARG ARG TYR GLY THR THR VAL GLU ALA LEU MET ARG LEU SEQRES 7 A 100 ASN GLY LEU SER SER PRO GLU ILE LYS VAL GLY GLN VAL SEQRES 8 A 100 LEU ARG LEU PRO GLU GLU GLY GLU ALA SEQRES 1 B 100 GLY GLN ALA THR TYR THR VAL ALA PRO GLY ASP THR LEU SEQRES 2 B 100 TYR SER ILE ALA ARG ARG TYR GLY THR THR VAL GLU GLU SEQRES 3 B 100 LEU MET ARG LEU ASN GLY LEU GLU SER PHE LEU LEU GLN SEQRES 4 B 100 PRO GLY GLN VAL LEU LYS LEU PRO SER ARG GLU ARG THR SEQRES 5 B 100 HIS VAL VAL ALA PRO GLY ASP THR LEU PHE SER LEU ALA SEQRES 6 B 100 ARG ARG TYR GLY THR THR VAL GLU ALA LEU MET ARG LEU SEQRES 7 B 100 ASN GLY LEU SER SER PRO GLU ILE LYS VAL GLY GLN VAL SEQRES 8 B 100 LEU ARG LEU PRO GLU GLU GLY GLU ALA SEQRES 1 C 100 GLY GLN ALA THR TYR THR VAL ALA PRO GLY ASP THR LEU SEQRES 2 C 100 TYR SER ILE ALA ARG ARG TYR GLY THR THR VAL GLU GLU SEQRES 3 C 100 LEU MET ARG LEU ASN GLY LEU GLU SER PHE LEU LEU GLN SEQRES 4 C 100 PRO GLY GLN VAL LEU LYS LEU PRO SER ARG GLU ARG THR SEQRES 5 C 100 HIS VAL VAL ALA PRO GLY ASP THR LEU PHE SER LEU ALA SEQRES 6 C 100 ARG ARG TYR GLY THR THR VAL GLU ALA LEU MET ARG LEU SEQRES 7 C 100 ASN GLY LEU SER SER PRO GLU ILE LYS VAL GLY GLN VAL SEQRES 8 C 100 LEU ARG LEU PRO GLU GLU GLY GLU ALA SEQRES 1 D 100 GLY GLN ALA THR TYR THR VAL ALA PRO GLY ASP THR LEU SEQRES 2 D 100 TYR SER ILE ALA ARG ARG TYR GLY THR THR VAL GLU GLU SEQRES 3 D 100 LEU MET ARG LEU ASN GLY LEU GLU SER PHE LEU LEU GLN SEQRES 4 D 100 PRO GLY GLN VAL LEU LYS LEU PRO SER ARG GLU ARG THR SEQRES 5 D 100 HIS VAL VAL ALA PRO GLY ASP THR LEU PHE SER LEU ALA SEQRES 6 D 100 ARG ARG TYR GLY THR THR VAL GLU ALA LEU MET ARG LEU SEQRES 7 D 100 ASN GLY LEU SER SER PRO GLU ILE LYS VAL GLY GLN VAL SEQRES 8 D 100 LEU ARG LEU PRO GLU GLU GLY GLU ALA FORMUL 5 HOH *82(H2 O) HELIX 1 1 THR A 26 TYR A 34 1 9 HELIX 2 2 THR A 37 GLY A 46 1 10 HELIX 3 3 THR A 74 TYR A 82 1 9 HELIX 4 4 THR A 85 ASN A 93 1 9 HELIX 5 5 THR B 26 TYR B 34 1 9 HELIX 6 6 THR B 37 GLY B 46 1 10 HELIX 7 7 THR B 74 TYR B 82 1 9 HELIX 8 8 THR B 85 ASN B 93 1 9 HELIX 9 9 TYR C 28 TYR C 34 1 7 HELIX 10 10 THR C 37 GLY C 46 1 10 HELIX 11 11 THR C 74 TYR C 82 1 9 HELIX 12 12 THR C 85 ASN C 93 1 9 HELIX 13 13 THR D 26 TYR D 34 1 9 HELIX 14 14 THR D 37 ASN D 45 1 9 HELIX 15 15 THR D 74 TYR D 82 1 9 HELIX 16 16 THR D 85 GLY D 94 1 10 SHEET 1 AA 2 THR A 18 THR A 20 0 SHEET 2 AA 2 VAL A 57 LYS A 59 -1 O LEU A 58 N TYR A 19 SHEET 1 AB 2 ARG A 65 VAL A 68 0 SHEET 2 AB 2 VAL A 105 LEU A 108 -1 O LEU A 106 N HIS A 67 SHEET 1 BA 2 THR B 18 THR B 20 0 SHEET 2 BA 2 VAL B 57 LYS B 59 -1 O LEU B 58 N TYR B 19 SHEET 1 BB 2 ARG B 65 VAL B 68 0 SHEET 2 BB 2 VAL B 105 LEU B 108 -1 O LEU B 106 N HIS B 67 SHEET 1 CA 2 ALA C 17 THR C 20 0 SHEET 2 CA 2 VAL C 57 LEU C 60 -1 O LEU C 58 N TYR C 19 SHEET 1 CB 2 ARG C 65 VAL C 68 0 SHEET 2 CB 2 VAL C 105 LEU C 108 -1 O LEU C 106 N HIS C 67 SHEET 1 DA 2 THR D 18 THR D 20 0 SHEET 2 DA 2 VAL D 57 LYS D 59 -1 O LEU D 58 N TYR D 19 SHEET 1 DB 2 ARG D 65 VAL D 68 0 SHEET 2 DB 2 VAL D 105 LEU D 108 -1 O LEU D 106 N HIS D 67 CRYST1 122.930 122.930 76.810 90.00 90.00 90.00 P 42 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008135 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008135 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013019 0.00000