HEADER HYDROLASE 04-SEP-14 4UZ3 TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL LYSM DOMAINS FROM THE PUTATIVE TITLE 2 NLPC/P60 D,L ENDOPEPTIDASE FROM T. THERMOPHILUS BOUND TO N-ACETYL- TITLE 3 CHITOHEXAOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL WALL-BINDING ENDOPEPTIDASE-RELATED PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: LYSM DOMAIN, RESIDUES 16-114; COMPND 5 SYNONYM: P60_TTH; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET32 EKLIC KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.E.M.M.WONG,M.BLAISE REVDAT 6 08-MAY-24 4UZ3 1 HETSYN REVDAT 5 29-JUL-20 4UZ3 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 17-JAN-18 4UZ3 1 REMARK REVDAT 3 25-MAR-15 4UZ3 1 JRNL REVDAT 2 11-MAR-15 4UZ3 1 JRNL REVDAT 1 14-JAN-15 4UZ3 0 JRNL AUTH J.E.M.M.WONG,S.R.MIDTGAARD,K.GYSEL,M.B.THYGESEN, JRNL AUTH 2 K.K.SORENSEN,K.J.JENSEN,J.STOUGAARD,S.THIRUP,M.BLAISE JRNL TITL AN INTERMOLECULAR BINDING MECHANISM INVOLVING MULTIPLE LYSM JRNL TITL 2 DOMAINS MEDIATES CARBOHYDRATE RECOGNITION BY AN JRNL TITL 3 ENDOPEPTIDASE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 592 2015 JRNL REFN ISSN 0907-4449 JRNL PMID 25760608 JRNL DOI 10.1107/S139900471402793X REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 39631 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1987 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.5902 - 4.2052 1.00 2826 151 0.1516 0.1695 REMARK 3 2 4.2052 - 3.3432 1.00 2723 144 0.1265 0.1578 REMARK 3 3 3.3432 - 2.9222 1.00 2704 137 0.1475 0.1740 REMARK 3 4 2.9222 - 2.6557 1.00 2695 145 0.1600 0.1994 REMARK 3 5 2.6557 - 2.4657 1.00 2698 143 0.1558 0.2326 REMARK 3 6 2.4657 - 2.3206 1.00 2680 140 0.1559 0.1926 REMARK 3 7 2.3206 - 2.2045 1.00 2648 145 0.1496 0.1721 REMARK 3 8 2.2045 - 2.1087 1.00 2683 143 0.1451 0.1872 REMARK 3 9 2.1087 - 2.0276 1.00 2675 140 0.1517 0.1933 REMARK 3 10 2.0276 - 1.9577 1.00 2648 140 0.1531 0.1964 REMARK 3 11 1.9577 - 1.8965 1.00 2682 142 0.1606 0.2098 REMARK 3 12 1.8965 - 1.8424 1.00 2639 141 0.1832 0.2284 REMARK 3 13 1.8424 - 1.7939 1.00 2657 141 0.1864 0.2642 REMARK 3 14 1.7939 - 1.7502 1.00 2686 135 0.1937 0.2443 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2354 REMARK 3 ANGLE : 0.915 3241 REMARK 3 CHIRALITY : 0.043 426 REMARK 3 PLANARITY : 0.004 385 REMARK 3 DIHEDRAL : 10.752 889 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UZ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1290061659. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39631 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : 0.01000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.30 REMARK 200 R MERGE FOR SHELL (I) : 0.87000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH6.5, 1.6 M AMMONIUM REMARK 280 SULFATE, 5% DIOXANE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 52.74500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.74500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.74500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.74500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.74500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.74500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 52.74500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 52.74500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 52.74500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 52.74500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 52.74500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 52.74500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 52.74500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 52.74500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 52.74500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 52.74500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 52.74500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 52.74500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2196 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 15 REMARK 465 GLY B 15 REMARK 465 GLN B 16 REMARK 465 GLU B 111 REMARK 465 GLY B 112 REMARK 465 GLU B 113 REMARK 465 ALA B 114 REMARK 465 GLY C 15 REMARK 465 ARG C 63 REMARK 465 GLU C 64 REMARK 465 ARG C 65 REMARK 465 THR C 66 REMARK 465 HIS C 67 REMARK 465 VAL C 68 REMARK 465 VAL C 69 REMARK 465 ALA C 70 REMARK 465 PRO C 71 REMARK 465 GLY C 72 REMARK 465 ASP C 73 REMARK 465 THR C 74 REMARK 465 LEU C 75 REMARK 465 PHE C 76 REMARK 465 SER C 77 REMARK 465 LEU C 78 REMARK 465 ALA C 79 REMARK 465 ARG C 80 REMARK 465 ARG C 81 REMARK 465 TYR C 82 REMARK 465 GLY C 83 REMARK 465 THR C 84 REMARK 465 THR C 85 REMARK 465 VAL C 86 REMARK 465 GLU C 87 REMARK 465 ALA C 88 REMARK 465 LEU C 89 REMARK 465 MET C 90 REMARK 465 ARG C 91 REMARK 465 LEU C 92 REMARK 465 ASN C 93 REMARK 465 GLY C 94 REMARK 465 LEU C 95 REMARK 465 SER C 96 REMARK 465 SER C 97 REMARK 465 PRO C 98 REMARK 465 GLU C 99 REMARK 465 ILE C 100 REMARK 465 LYS C 101 REMARK 465 VAL C 102 REMARK 465 GLY C 103 REMARK 465 GLN C 104 REMARK 465 VAL C 105 REMARK 465 LEU C 106 REMARK 465 ARG C 107 REMARK 465 LEU C 108 REMARK 465 PRO C 109 REMARK 465 GLU C 110 REMARK 465 GLU C 111 REMARK 465 GLY C 112 REMARK 465 GLU C 113 REMARK 465 ALA C 114 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN C 16 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C1 NAG E 2 O4 NDG A 1112 1.44 REMARK 500 O HOH A 2025 O HOH A 2066 2.12 REMARK 500 O HOH A 2138 O HOH A 2141 2.13 REMARK 500 O HOH C 2002 O HOH C 2053 2.15 REMARK 500 OE1 GLN A 56 O HOH A 2087 2.18 REMARK 500 O HOH A 2066 O HOH A 2121 2.18 REMARK 500 O HOH A 2156 O HOH B 2043 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 87 O6 NAG F 4 4545 2.04 REMARK 500 O GLY A 112 O HOH C 2006 12455 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 36 -163.55 -126.21 REMARK 500 THR A 84 -156.12 -139.77 REMARK 500 THR B 36 -163.84 -125.13 REMARK 500 THR C 36 -158.09 -120.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2041 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A2196 DISTANCE = 7.58 ANGSTROMS REMARK 525 HOH C2063 DISTANCE = 5.91 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UZ2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL LYSM DOMAINS FROM THE PUTATIVE REMARK 900 NLPC/P60 D,L ENDOPEPTIDASE FROM T. THERMOPHILUS REMARK 900 RELATED ID: 4XCM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PUTATIVE NLPC/P60 D,L ENDOPEPTIDASE FROM REMARK 900 T. THERMOPHILUS DBREF 4UZ3 A 16 114 UNP Q5SLM7 Q5SLM7_THET8 16 114 DBREF 4UZ3 B 16 114 UNP Q5SLM7 Q5SLM7_THET8 16 114 DBREF 4UZ3 C 16 114 UNP Q5SLM7 Q5SLM7_THET8 16 114 SEQADV 4UZ3 GLY A 15 UNP Q5SLM7 EXPRESSION TAG SEQADV 4UZ3 GLY B 15 UNP Q5SLM7 EXPRESSION TAG SEQADV 4UZ3 GLY C 15 UNP Q5SLM7 EXPRESSION TAG SEQRES 1 A 100 GLY GLN ALA THR TYR THR VAL ALA PRO GLY ASP THR LEU SEQRES 2 A 100 TYR SER ILE ALA ARG ARG TYR GLY THR THR VAL GLU GLU SEQRES 3 A 100 LEU MET ARG LEU ASN GLY LEU GLU SER PHE LEU LEU GLN SEQRES 4 A 100 PRO GLY GLN VAL LEU LYS LEU PRO SER ARG GLU ARG THR SEQRES 5 A 100 HIS VAL VAL ALA PRO GLY ASP THR LEU PHE SER LEU ALA SEQRES 6 A 100 ARG ARG TYR GLY THR THR VAL GLU ALA LEU MET ARG LEU SEQRES 7 A 100 ASN GLY LEU SER SER PRO GLU ILE LYS VAL GLY GLN VAL SEQRES 8 A 100 LEU ARG LEU PRO GLU GLU GLY GLU ALA SEQRES 1 B 100 GLY GLN ALA THR TYR THR VAL ALA PRO GLY ASP THR LEU SEQRES 2 B 100 TYR SER ILE ALA ARG ARG TYR GLY THR THR VAL GLU GLU SEQRES 3 B 100 LEU MET ARG LEU ASN GLY LEU GLU SER PHE LEU LEU GLN SEQRES 4 B 100 PRO GLY GLN VAL LEU LYS LEU PRO SER ARG GLU ARG THR SEQRES 5 B 100 HIS VAL VAL ALA PRO GLY ASP THR LEU PHE SER LEU ALA SEQRES 6 B 100 ARG ARG TYR GLY THR THR VAL GLU ALA LEU MET ARG LEU SEQRES 7 B 100 ASN GLY LEU SER SER PRO GLU ILE LYS VAL GLY GLN VAL SEQRES 8 B 100 LEU ARG LEU PRO GLU GLU GLY GLU ALA SEQRES 1 C 100 GLY GLN ALA THR TYR THR VAL ALA PRO GLY ASP THR LEU SEQRES 2 C 100 TYR SER ILE ALA ARG ARG TYR GLY THR THR VAL GLU GLU SEQRES 3 C 100 LEU MET ARG LEU ASN GLY LEU GLU SER PHE LEU LEU GLN SEQRES 4 C 100 PRO GLY GLN VAL LEU LYS LEU PRO SER ARG GLU ARG THR SEQRES 5 C 100 HIS VAL VAL ALA PRO GLY ASP THR LEU PHE SER LEU ALA SEQRES 6 C 100 ARG ARG TYR GLY THR THR VAL GLU ALA LEU MET ARG LEU SEQRES 7 C 100 ASN GLY LEU SER SER PRO GLU ILE LYS VAL GLY GLN VAL SEQRES 8 C 100 LEU ARG LEU PRO GLU GLU GLY GLU ALA HET NDG D 1 15 HET NAG D 1 15 HET NAG D 2 14 HET NAG D 3 14 HET NAG D 4 14 HET NAG D 5 14 HET NAG D 6 14 HET NAG E 1 15 HET NAG E 2 14 HET NAG E 3 14 HET NAG E 4 14 HET NAG E 5 14 HET NAG E 6 14 HET NAG F 1 15 HET NDG F 1 15 HET NAG F 2 14 HET NAG F 3 14 HET NAG F 4 14 HET NAG F 5 14 HET NAG F 6 14 HET NDG A1112 15 HET SO4 A1126 5 HET SO4 A1127 5 HET DIO A1128 6 HET SO4 B1113 5 HET DIO C1069 6 HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM DIO 1,4-DIETHYLENE DIOXIDE HETSYN NDG N-ACETYL-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NDG ALPHA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2- HETSYN 3 NDG ACETAMIDO-2-DEOXY-GLUCOSE; 2-(ACETYLAMINO)-2-DEOXY-A- HETSYN 4 NDG D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NDG 3(C8 H15 N O6) FORMUL 4 NAG 18(C8 H15 N O6) FORMUL 8 SO4 3(O4 S 2-) FORMUL 10 DIO 2(C4 H8 O2) FORMUL 13 HOH *393(H2 O) HELIX 1 1 THR A 26 GLY A 35 1 10 HELIX 2 2 THR A 37 GLY A 46 1 10 HELIX 3 3 THR A 74 TYR A 82 1 9 HELIX 4 4 THR A 85 GLY A 94 1 10 HELIX 5 5 GLU A 110 ALA A 114 5 5 HELIX 6 6 THR B 26 GLY B 35 1 10 HELIX 7 7 THR B 37 ASN B 45 1 9 HELIX 8 8 THR B 74 TYR B 82 1 9 HELIX 9 9 THR B 85 ASN B 93 1 9 HELIX 10 10 THR C 26 GLY C 35 1 10 HELIX 11 11 THR C 37 GLY C 46 1 10 SHEET 1 AA 2 THR A 18 THR A 20 0 SHEET 2 AA 2 VAL A 57 LYS A 59 -1 O LEU A 58 N TYR A 19 SHEET 1 AB 2 THR A 66 VAL A 68 0 SHEET 2 AB 2 VAL A 105 ARG A 107 -1 O LEU A 106 N HIS A 67 SHEET 1 BA 2 THR B 18 THR B 20 0 SHEET 2 BA 2 VAL B 57 LYS B 59 -1 O LEU B 58 N TYR B 19 SHEET 1 BB 2 THR B 66 VAL B 68 0 SHEET 2 BB 2 VAL B 105 ARG B 107 -1 O LEU B 106 N HIS B 67 SHEET 1 CA 2 THR C 18 THR C 20 0 SHEET 2 CA 2 VAL C 57 LYS C 59 -1 O LEU C 58 N TYR C 19 LINK O4 ANDG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 BNAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 NAG D 3 1555 1555 1.44 LINK O4 NAG D 3 C1 NAG D 4 1555 1555 1.43 LINK O4 NAG D 4 C1 NAG D 5 1555 1555 1.44 LINK O4 NAG D 5 C1 NAG D 6 1555 1555 1.43 LINK O4 ANAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O4 NAG E 2 C1 NAG E 3 1555 1555 1.44 LINK O4 NAG E 3 C1 NAG E 4 1555 1555 1.43 LINK O4 NAG E 4 C1 NAG E 5 1555 1555 1.44 LINK O4 NAG E 5 C1 NAG E 6 1555 1555 1.44 LINK O4 ANAG F 1 C1 NAG F 2 1555 1555 1.44 LINK O4 BNDG F 1 C1 NAG F 2 1555 1555 1.44 LINK O4 NAG F 2 C1 NAG F 3 1555 1555 1.44 LINK O4 NAG F 3 C1 NAG F 4 1555 1555 1.44 LINK O4 NAG F 4 C1 NAG F 5 1555 1555 1.45 LINK O4 NAG F 5 C1 NAG F 6 1555 1555 1.44 CRYST1 105.490 105.490 105.490 90.00 90.00 90.00 P 21 3 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009480 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009480 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009480 0.00000