HEADER VIRAL PROTEIN 05-SEP-14 4UZC TITLE KSHV LANA (ORF73) C-TERMINAL DOMAIN, SPIRAL: HEXAGONAL CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORF 73; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, RESIDUES 1013-1149; COMPND 5 SYNONYM: LATENCY-ASSOCIATED NUCLEAR ANTIGEN, LANA-1, KSHV LANA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 8; SOURCE 3 ORGANISM_TAXID: 37296; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET-BASED KEYWDS VIRAL PROTEIN, DNA-BINDING DOMAIN, ORIGIN-BINDING DOMAIN, KEYWDS 2 OLIGOMERIZATION DOMAIN, HHV-8, GAMMAHERPESVIRUS, RHADINOVIRUS, KEYWDS 3 PRIMARY EFFUSION LYMPHOMA, MULTICENTRIC CASTLEMAN'S DISEASE, TUMOR KEYWDS 4 VIRUS, CANCER EXPDTA X-RAY DIFFRACTION AUTHOR J.HELLERT,J.KRAUSZE,T.LUHRS REVDAT 6 10-JAN-24 4UZC 1 REMARK REVDAT 5 22-MAY-19 4UZC 1 REMARK REVDAT 4 08-MAY-19 4UZC 1 REMARK REVDAT 3 10-JUN-15 4UZC 1 JRNL REVDAT 2 20-MAY-15 4UZC 1 JRNL REVDAT 1 13-MAY-15 4UZC 0 JRNL AUTH J.HELLERT,M.WEIDNER-GLUNDE,J.KRAUSZE,H.LUNSDORF,C.RITTER, JRNL AUTH 2 T.F.SCHULZ,T.LUHRS JRNL TITL THE 3D STRUCTURE OF KAPOSI SARCOMA HERPESVIRUS LANA JRNL TITL 2 C-TERMINAL DOMAIN BOUND TO DNA. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 6694 2015 JRNL REFN ISSN 0027-8424 JRNL PMID 25947153 JRNL DOI 10.1073/PNAS.1421804112 REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 89.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 7485 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 389 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 550 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE SET COUNT : 29 REMARK 3 BIN FREE R VALUE : 0.4260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4316 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 119.8 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 115.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.00000 REMARK 3 B22 (A**2) : -2.00000 REMARK 3 B33 (A**2) : 6.49000 REMARK 3 B12 (A**2) : -1.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.692 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.553 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 40.346 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4464 ; 0.001 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4244 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6056 ; 0.508 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9816 ; 0.492 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 532 ; 3.332 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 200 ;27.500 ;23.200 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 732 ;14.491 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;12.955 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 600 ; 0.035 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5024 ; 0.002 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1076 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2140 ; 7.888 ;11.100 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2139 ; 7.885 ;11.098 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2668 ;12.583 ;16.636 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2324 ; 7.588 ;11.907 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4UZC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1290061596. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7874 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.700 REMARK 200 RESOLUTION RANGE LOW (A) : 89.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 29.70 REMARK 200 R MERGE (I) : 0.23000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 31.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX PHASER-MR REMARK 200 STARTING MODEL: PDB ENTRY 2YPY REMARK 200 REMARK 200 REMARK: DATA IN RESOLUTION RANGE 3.93 A - 3.87 A IS EXCLUDED DUE REMARK 200 TO THE PRESENCE OF AN ICE RING REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4 UL OF 31.5 MG/ML PROTEIN IN 5 MM REMARK 280 BISTRIS-CL, 5 MM DTT, PH 6.5 WERE AS SUCH EQUILIBRATED AGAINST A REMARK 280 RESERVOIR SOLUTION OF 170 MM LITHIUM ACETATE AND 18% (W/V) REMARK 280 PEG3350 IN A SITTING DROP SETUP AT 20 DEGREE CENTIGRADE. AFTER REMARK 280 TWO DAYS, CRYSTALS WERE DETACHED FROM THE CARRIER PLASTIC BY REMARK 280 ADDING 1 UL OF 2 M AMMONIUM FORMATE., VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 152.16667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.08333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 114.12500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.04167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 190.20833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 152.16667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 76.08333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 38.04167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 114.12500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 190.20833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS IRREGULAR REMARK 300 HELICAL SYMMETRY WITH THE FOLLOWING AVERAGE PARAMETERS: REMARK 300 ROTATION PER DIMER (TWIST) = -75.00 DEGREES REMARK 300 RISE PER DIMER (HEIGHT) = 9.51 ANGSTROMS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 48-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 48-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 134933 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 281322 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -928.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 1 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 -1.000000 -38.04167 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 190.20833 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 38.04167 REMARK 350 BIOMT1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 38.04167 REMARK 350 BIOMT1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 7 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 1.000000 76.08333 REMARK 350 BIOMT1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 8 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 76.08333 REMARK 350 BIOMT1 9 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 9 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 114.12500 REMARK 350 BIOMT1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 10 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 10 0.000000 0.000000 -1.000000 114.12500 REMARK 350 BIOMT1 11 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 11 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 1.000000 152.16667 REMARK 350 BIOMT1 12 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 12 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 12 0.000000 0.000000 -1.000000 152.16667 REMARK 350 BIOMT1 13 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 13 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 13 0.000000 0.000000 1.000000 190.20833 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1011 REMARK 465 SER A 1012 REMARK 465 ARG A 1013 REMARK 465 PRO A 1148 REMARK 465 GLY A 1149 REMARK 465 GLY B 1011 REMARK 465 SER B 1012 REMARK 465 ARG B 1013 REMARK 465 PRO B 1148 REMARK 465 GLY B 1149 REMARK 465 GLY C 1011 REMARK 465 SER C 1012 REMARK 465 ARG C 1013 REMARK 465 PRO C 1148 REMARK 465 GLY C 1149 REMARK 465 GLY D 1011 REMARK 465 SER D 1012 REMARK 465 ARG D 1013 REMARK 465 PRO D 1148 REMARK 465 GLY D 1149 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 1048 NZ LYS B 1081 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP B 1094 CG PRO D 1093 10555 1.42 REMARK 500 OE1 GLN B 1016 OE1 GLN C 1095 12564 1.58 REMARK 500 OD1 ASP B 1094 CD PRO D 1093 10555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A1086 -160.76 -123.89 REMARK 500 SER B1086 -160.96 -123.90 REMARK 500 SER C1086 -160.23 -123.91 REMARK 500 SER D1086 -161.02 -123.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UZB RELATED DB: PDB REMARK 900 KSHV LANA (ORF73) C-TERMINAL DOMAIN MUTANT BOUND TO LBS1 DNA REMARK 900 (R1039Q, R1040Q, K1055E, K1109A, D1110A, A1121E , K1138S, K1140D, REMARK 900 K1141D) DBREF 4UZC A 1013 1149 UNP Q76SB0 Q76SB0_HHV8 1013 1149 DBREF 4UZC B 1013 1149 UNP Q76SB0 Q76SB0_HHV8 1013 1149 DBREF 4UZC C 1013 1149 UNP Q76SB0 Q76SB0_HHV8 1013 1149 DBREF 4UZC D 1013 1149 UNP Q76SB0 Q76SB0_HHV8 1013 1149 SEQADV 4UZC GLY A 1011 UNP Q76SB0 EXPRESSION TAG SEQADV 4UZC SER A 1012 UNP Q76SB0 EXPRESSION TAG SEQADV 4UZC GLY B 1011 UNP Q76SB0 EXPRESSION TAG SEQADV 4UZC SER B 1012 UNP Q76SB0 EXPRESSION TAG SEQADV 4UZC GLY C 1011 UNP Q76SB0 EXPRESSION TAG SEQADV 4UZC SER C 1012 UNP Q76SB0 EXPRESSION TAG SEQADV 4UZC GLY D 1011 UNP Q76SB0 EXPRESSION TAG SEQADV 4UZC SER D 1012 UNP Q76SB0 EXPRESSION TAG SEQRES 1 A 139 GLY SER ARG TYR GLN GLN PRO PRO VAL PRO TYR ARG GLN SEQRES 2 A 139 ILE ASP ASP CYS PRO ALA LYS ALA ARG PRO GLN HIS ILE SEQRES 3 A 139 PHE TYR ARG ARG PHE LEU GLY LYS ASP GLY ARG ARG ASP SEQRES 4 A 139 PRO LYS CYS GLN TRP LYS PHE ALA VAL ILE PHE TRP GLY SEQRES 5 A 139 ASN ASP PRO TYR GLY LEU LYS LYS LEU SER GLN ALA PHE SEQRES 6 A 139 GLN PHE GLY GLY VAL LYS ALA GLY PRO VAL SER CYS LEU SEQRES 7 A 139 PRO HIS PRO GLY PRO ASP GLN SER PRO ILE THR TYR CYS SEQRES 8 A 139 VAL TYR VAL TYR CYS GLN ASN LYS ASP THR SER LYS LYS SEQRES 9 A 139 VAL GLN MET ALA ARG LEU ALA TRP GLU ALA SER HIS PRO SEQRES 10 A 139 LEU ALA GLY ASN LEU GLN SER SER ILE VAL LYS PHE LYS SEQRES 11 A 139 LYS PRO LEU PRO LEU THR GLN PRO GLY SEQRES 1 B 139 GLY SER ARG TYR GLN GLN PRO PRO VAL PRO TYR ARG GLN SEQRES 2 B 139 ILE ASP ASP CYS PRO ALA LYS ALA ARG PRO GLN HIS ILE SEQRES 3 B 139 PHE TYR ARG ARG PHE LEU GLY LYS ASP GLY ARG ARG ASP SEQRES 4 B 139 PRO LYS CYS GLN TRP LYS PHE ALA VAL ILE PHE TRP GLY SEQRES 5 B 139 ASN ASP PRO TYR GLY LEU LYS LYS LEU SER GLN ALA PHE SEQRES 6 B 139 GLN PHE GLY GLY VAL LYS ALA GLY PRO VAL SER CYS LEU SEQRES 7 B 139 PRO HIS PRO GLY PRO ASP GLN SER PRO ILE THR TYR CYS SEQRES 8 B 139 VAL TYR VAL TYR CYS GLN ASN LYS ASP THR SER LYS LYS SEQRES 9 B 139 VAL GLN MET ALA ARG LEU ALA TRP GLU ALA SER HIS PRO SEQRES 10 B 139 LEU ALA GLY ASN LEU GLN SER SER ILE VAL LYS PHE LYS SEQRES 11 B 139 LYS PRO LEU PRO LEU THR GLN PRO GLY SEQRES 1 C 139 GLY SER ARG TYR GLN GLN PRO PRO VAL PRO TYR ARG GLN SEQRES 2 C 139 ILE ASP ASP CYS PRO ALA LYS ALA ARG PRO GLN HIS ILE SEQRES 3 C 139 PHE TYR ARG ARG PHE LEU GLY LYS ASP GLY ARG ARG ASP SEQRES 4 C 139 PRO LYS CYS GLN TRP LYS PHE ALA VAL ILE PHE TRP GLY SEQRES 5 C 139 ASN ASP PRO TYR GLY LEU LYS LYS LEU SER GLN ALA PHE SEQRES 6 C 139 GLN PHE GLY GLY VAL LYS ALA GLY PRO VAL SER CYS LEU SEQRES 7 C 139 PRO HIS PRO GLY PRO ASP GLN SER PRO ILE THR TYR CYS SEQRES 8 C 139 VAL TYR VAL TYR CYS GLN ASN LYS ASP THR SER LYS LYS SEQRES 9 C 139 VAL GLN MET ALA ARG LEU ALA TRP GLU ALA SER HIS PRO SEQRES 10 C 139 LEU ALA GLY ASN LEU GLN SER SER ILE VAL LYS PHE LYS SEQRES 11 C 139 LYS PRO LEU PRO LEU THR GLN PRO GLY SEQRES 1 D 139 GLY SER ARG TYR GLN GLN PRO PRO VAL PRO TYR ARG GLN SEQRES 2 D 139 ILE ASP ASP CYS PRO ALA LYS ALA ARG PRO GLN HIS ILE SEQRES 3 D 139 PHE TYR ARG ARG PHE LEU GLY LYS ASP GLY ARG ARG ASP SEQRES 4 D 139 PRO LYS CYS GLN TRP LYS PHE ALA VAL ILE PHE TRP GLY SEQRES 5 D 139 ASN ASP PRO TYR GLY LEU LYS LYS LEU SER GLN ALA PHE SEQRES 6 D 139 GLN PHE GLY GLY VAL LYS ALA GLY PRO VAL SER CYS LEU SEQRES 7 D 139 PRO HIS PRO GLY PRO ASP GLN SER PRO ILE THR TYR CYS SEQRES 8 D 139 VAL TYR VAL TYR CYS GLN ASN LYS ASP THR SER LYS LYS SEQRES 9 D 139 VAL GLN MET ALA ARG LEU ALA TRP GLU ALA SER HIS PRO SEQRES 10 D 139 LEU ALA GLY ASN LEU GLN SER SER ILE VAL LYS PHE LYS SEQRES 11 D 139 LYS PRO LEU PRO LEU THR GLN PRO GLY HELIX 1 1 ILE A 1024 ASP A 1026 1 3 HELIX 2 2 ARG A 1032 GLY A 1046 1 15 HELIX 3 3 PRO A 1065 ALA A 1074 1 10 HELIX 4 4 LYS A 1109 SER A 1125 1 17 HELIX 5 5 ILE B 1024 ASP B 1026 1 3 HELIX 6 6 ARG B 1032 GLY B 1046 1 15 HELIX 7 7 PRO B 1065 ALA B 1074 1 10 HELIX 8 8 LYS B 1109 SER B 1125 1 17 HELIX 9 9 ILE C 1024 ASP C 1026 1 3 HELIX 10 10 ARG C 1032 GLY C 1046 1 15 HELIX 11 11 PRO C 1065 ALA C 1074 1 10 HELIX 12 12 LYS C 1109 SER C 1125 1 17 HELIX 13 13 ILE D 1024 ASP D 1026 1 3 HELIX 14 14 ARG D 1032 GLY D 1046 1 15 HELIX 15 15 PRO D 1065 ALA D 1074 1 10 HELIX 16 16 LYS D 1109 SER D 1125 1 17 SHEET 1 1 1 PHE A1056 GLY A1062 0 SHEET 1 2 1 VAL A1080 ALA A1082 0 SHEET 1 3 1 SER A1086 CYS A1087 0 SHEET 1 4 1 TYR A1100 CYS A1106 0 SHEET 1 5 1 GLN A1133 LYS A1138 0 SHEET 1 6 1 PHE B1056 GLY B1062 0 SHEET 1 7 1 VAL B1080 ALA B1082 0 SHEET 1 8 1 SER B1086 CYS B1087 0 SHEET 1 9 1 TYR B1100 CYS B1106 0 SHEET 1 10 1 GLN B1133 PHE B1139 0 SHEET 1 11 1 PHE C1056 GLY C1062 0 SHEET 1 12 1 VAL C1080 ALA C1082 0 SHEET 1 13 1 SER C1086 CYS C1087 0 SHEET 1 14 1 TYR C1100 CYS C1106 0 SHEET 1 15 1 GLN C1133 PHE C1139 0 SHEET 1 16 1 PHE D1056 GLY D1062 0 SHEET 1 17 1 VAL D1080 ALA D1082 0 SHEET 1 18 1 SER D1086 CYS D1087 0 SHEET 1 19 1 TYR D1100 CYS D1106 0 SHEET 1 20 1 GLN D1133 LYS D1138 0 CRYST1 103.180 103.180 228.250 90.00 90.00 120.00 P 65 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009692 0.005596 0.000000 0.00000 SCALE2 0.000000 0.011191 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004381 0.00000 MTRIX1 1 -0.655400 0.754400 0.036420 -6.85191 1 MTRIX2 1 0.755250 0.655070 0.021970 3.48712 1 MTRIX3 1 -0.007280 0.041900 -0.999100 -29.04712 1 MTRIX1 2 0.313950 0.948250 0.047460 -0.66243 1 MTRIX2 2 -0.949440 0.313700 0.012710 -7.30179 1 MTRIX3 2 -0.002840 -0.049050 0.998790 -8.91289 1 MTRIX1 3 -0.869920 -0.491850 -0.036460 -7.86142 1 MTRIX2 3 -0.493190 0.868090 0.056380 -4.17880 1 MTRIX3 3 0.003920 0.067030 -0.997740 -18.95746 1