HEADER HYDROLASE 05-SEP-14 4UZK TITLE STRUCTURE OF THE WNT DEACYLASE NOTUM FROM DROSOPHILA - CRYSTAL FORM II TITLE 2 - 1.9A COMPND MOL_ID: 1; COMPND 2 MOLECULE: NOTUM; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 82-415,598-617; COMPND 5 SYNONYM: NOTUM PROTEIN, WINGFUL; COMPND 6 EC: 3.1.1.1; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: R416-K597 REPLACED BY GNNNG, GLYCOSYLATED AT N95 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS HYDROLASE, ESTERASE, EXTRACELLULAR, ALPHA/BETA HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.ZEBISCH,E.Y.JONES REVDAT 3 29-JUL-20 4UZK 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 18-MAR-15 4UZK 1 JRNL REVDAT 1 25-FEB-15 4UZK 0 JRNL AUTH S.KAKUGAWA,P.F.LANGTON,M.ZEBISCH,S.A.HOWELL,T.CHANG,Y.LIU, JRNL AUTH 2 T.FEIZI,G.BINEVA,N.O'REILLY,A.P.SNIJDERS,E.Y.JONES,J.VINCENT JRNL TITL NOTUM DEACYLATES WNT PROTEINS TO SUPPRESS SIGNALLING JRNL TITL 2 ACTIVITY. JRNL REF NATURE V. 519 187 2015 JRNL REFN ISSN 0028-0836 JRNL PMID 25731175 JRNL DOI 10.1038/NATURE14259 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 61229 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1252 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4439 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5583 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 219 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.44000 REMARK 3 B22 (A**2) : 0.68000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.133 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.769 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5859 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5413 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7993 ; 1.594 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12429 ; 0.827 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 716 ; 6.166 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 270 ;34.109 ;22.222 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 942 ;13.546 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 58 ;16.452 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 837 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6618 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1456 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2814 ; 2.288 ; 2.737 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2813 ; 2.286 ; 2.736 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3516 ; 3.374 ; 4.084 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3045 ; 3.277 ; 3.158 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 617 REMARK 3 ORIGIN FOR THE GROUP (A): -27.8236 27.4737 -27.3630 REMARK 3 T TENSOR REMARK 3 T11: 0.0315 T22: 0.0191 REMARK 3 T33: 0.0659 T12: 0.0225 REMARK 3 T13: 0.0023 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.3610 L22: 0.5139 REMARK 3 L33: 0.4528 L12: -0.1423 REMARK 3 L13: 0.1609 L23: -0.1795 REMARK 3 S TENSOR REMARK 3 S11: 0.0206 S12: -0.0060 S13: -0.0581 REMARK 3 S21: -0.0432 S22: -0.0353 S23: -0.0735 REMARK 3 S31: -0.0766 S32: -0.0556 S33: 0.0147 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 616 REMARK 3 ORIGIN FOR THE GROUP (A): -8.1103 -4.4647 -0.1736 REMARK 3 T TENSOR REMARK 3 T11: 0.0445 T22: 0.0139 REMARK 3 T33: 0.0695 T12: -0.0107 REMARK 3 T13: -0.0210 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.4712 L22: 0.3915 REMARK 3 L33: 0.4891 L12: -0.1476 REMARK 3 L13: 0.1005 L23: -0.1622 REMARK 3 S TENSOR REMARK 3 S11: -0.0099 S12: 0.0626 S13: 0.0212 REMARK 3 S21: 0.0431 S22: 0.0052 S23: -0.0116 REMARK 3 S31: 0.1022 S32: -0.0334 S33: 0.0047 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4UZK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1290061705. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62554 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 142.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NACL, 0.1 M LI2SO4, 0.1 M CAPSO REMARK 280 PH 9.5, 12.0 %W/V PEG 4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.62600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.06200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.55150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.06200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.62600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.55150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 9.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 80 REMARK 465 THR A 81 REMARK 465 GLY A 82 REMARK 465 ASP A 83 REMARK 465 HIS A 84 REMARK 465 SER A 85 REMARK 465 GLY A 416 REMARK 465 ASN A 417 REMARK 465 ASN A 418 REMARK 465 ASN A 419 REMARK 465 GLY A 420 REMARK 465 CYS A 598 REMARK 465 GLY A 618 REMARK 465 THR A 619 REMARK 465 HIS A 620 REMARK 465 HIS A 621 REMARK 465 HIS A 622 REMARK 465 HIS A 623 REMARK 465 HIS A 624 REMARK 465 HIS A 625 REMARK 465 HIS A 626 REMARK 465 HIS A 627 REMARK 465 HIS A 628 REMARK 465 HIS A 629 REMARK 465 GLU B 80 REMARK 465 THR B 81 REMARK 465 GLY B 82 REMARK 465 ASP B 83 REMARK 465 HIS B 84 REMARK 465 SER B 85 REMARK 465 ASN B 418 REMARK 465 ASN B 419 REMARK 465 GLY B 420 REMARK 465 CYS B 598 REMARK 465 THR B 617 REMARK 465 GLY B 618 REMARK 465 THR B 619 REMARK 465 HIS B 620 REMARK 465 HIS B 621 REMARK 465 HIS B 622 REMARK 465 HIS B 623 REMARK 465 HIS B 624 REMARK 465 HIS B 625 REMARK 465 HIS B 626 REMARK 465 HIS B 627 REMARK 465 HIS B 628 REMARK 465 HIS B 629 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 195 CG OD1 OD2 REMARK 470 THR A 196 OG1 CG2 REMARK 470 SER A 197 OG REMARK 470 ASP A 198 CG OD1 OD2 REMARK 470 ARG A 199 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 195 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 249 CG - CD - NE ANGL. DEV. = -13.2 DEGREES REMARK 500 ARG A 249 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 407 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 CYS B 408 CA - CB - SG ANGL. DEV. = 8.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 127 -148.59 65.45 REMARK 500 LEU A 142 48.78 -141.83 REMARK 500 SER A 237 -122.51 63.70 REMARK 500 PHE A 337 62.18 -112.84 REMARK 500 HIS A 384 113.62 -162.33 REMARK 500 VAL A 386 -28.01 -156.21 REMARK 500 TRP B 127 -147.25 64.29 REMARK 500 LEU B 142 53.48 -141.70 REMARK 500 ASP B 195 97.01 -60.07 REMARK 500 SER B 237 -122.62 62.66 REMARK 500 PHE B 337 61.55 -114.86 REMARK 500 VAL B 386 -30.67 -154.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UYU RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM I IODIDE REMARK 900 COMPLEX - 2.3A REMARK 900 RELATED ID: 4UYW RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM I HEPARIN REMARK 900 FRAGMENT COMPLEX - 1.7A REMARK 900 RELATED ID: 4UYZ RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM II - 2.8A REMARK 900 RELATED ID: 4UZ1 RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM III - 1.4A REMARK 900 RELATED ID: 4UZ5 RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM IV - 2.1A REMARK 900 RELATED ID: 4UZ6 RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM V - SOS COMPLEX REMARK 900 - 1.9A REMARK 900 RELATED ID: 4UZ7 RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACETYLASE NOTUM - CRYSTAL FORM VII - SOS REMARK 900 COMPLEX - 2.2A REMARK 900 RELATED ID: 4UZ9 RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM VII - SOS REMARK 900 COMPLEX - 2.2A REMARK 900 RELATED ID: 4UZA RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM VIII - REMARK 900 PHOSPHATE COMPLEX - 2.4A REMARK 900 RELATED ID: 4UZJ RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM III - 1.4A REMARK 900 RELATED ID: 4UZL RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM I MYRISTOLEATE REMARK 900 COMPLEX - 2.1A REMARK 900 RELATED ID: 4UZQ RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM IN COMPLEX WITH O-PALMITOLEOYL REMARK 900 SERINE - CRYSTAL FORM IX - 1.5A REMARK 900 RELATED ID: 4WBH RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 R416-K597 REPLACED BY GNNNG LINKER DBREF 4UZK A 82 415 UNP Q9VUX3 Q9VUX3_DROME 82 415 DBREF 4UZK A 598 617 UNP Q9VUX3 Q9VUX3_DROME 598 617 DBREF 4UZK B 82 415 UNP Q9VUX3 Q9VUX3_DROME 82 415 DBREF 4UZK B 598 617 UNP Q9VUX3 Q9VUX3_DROME 598 617 SEQADV 4UZK GLU A 80 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZK THR A 81 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZK GLY A 416 UNP Q9VUX3 LINKER SEQADV 4UZK ASN A 417 UNP Q9VUX3 LINKER SEQADV 4UZK ASN A 418 UNP Q9VUX3 LINKER SEQADV 4UZK ASN A 419 UNP Q9VUX3 LINKER SEQADV 4UZK GLY A 420 UNP Q9VUX3 LINKER SEQADV 4UZK GLY A 618 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZK THR A 619 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZK HIS A 620 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZK HIS A 621 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZK HIS A 622 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZK HIS A 623 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZK HIS A 624 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZK HIS A 625 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZK HIS A 626 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZK HIS A 627 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZK HIS A 628 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZK HIS A 629 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZK GLU B 80 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZK THR B 81 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZK GLY B 416 UNP Q9VUX3 LINKER SEQADV 4UZK ASN B 417 UNP Q9VUX3 LINKER SEQADV 4UZK ASN B 418 UNP Q9VUX3 LINKER SEQADV 4UZK ASN B 419 UNP Q9VUX3 LINKER SEQADV 4UZK GLY B 420 UNP Q9VUX3 LINKER SEQADV 4UZK GLY B 618 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZK THR B 619 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZK HIS B 620 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZK HIS B 621 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZK HIS B 622 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZK HIS B 623 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZK HIS B 624 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZK HIS B 625 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZK HIS B 626 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZK HIS B 627 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZK HIS B 628 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZK HIS B 629 UNP Q9VUX3 EXPRESSION TAG SEQRES 1 A 373 GLU THR GLY ASP HIS SER ARG SER LEU LYS ARG ALA ASN SEQRES 2 A 373 LEU ALA ASN THR SER ILE THR CYS ASN ASP GLY SER HIS SEQRES 3 A 373 ALA GLY PHE TYR LEU ARG LYS HIS PRO SER SER LYS LYS SEQRES 4 A 373 TRP ILE VAL LEU LEU GLU GLY GLY TRP HIS CYS PHE ASP SEQRES 5 A 373 VAL ARG SER CYS ARG SER ARG TRP MET ARG LEU ARG HIS SEQRES 6 A 373 LEU MET THR SER SER GLN TRP PRO GLU THR ARG ASP VAL SEQRES 7 A 373 GLY GLY ILE LEU SER PRO HIS PRO GLU GLU ASN PRO TYR SEQRES 8 A 373 TRP HIS ASN ALA ASN HIS VAL LEU ILE PRO TYR CYS SER SEQRES 9 A 373 SER ASP SER TRP SER GLY THR ARG THR GLU PRO ASP THR SEQRES 10 A 373 SER ASP ARG GLU ASN SER TRP ARG PHE MET GLY ALA LEU SEQRES 11 A 373 ILE LEU ARG GLN VAL ILE ALA GLU LEU ILE PRO VAL GLY SEQRES 12 A 373 LEU GLY ARG VAL PRO GLY GLY GLU LEU MET LEU VAL GLY SEQRES 13 A 373 SER SER ALA GLY GLY MET GLY VAL MET LEU ASN LEU ASP SEQRES 14 A 373 ARG ILE ARG ASP PHE LEU VAL ASN GLU LYS LYS LEU GLN SEQRES 15 A 373 ILE THR VAL ARG GLY VAL SER ASP SER GLY TRP PHE LEU SEQRES 16 A 373 ASP ARG GLU PRO TYR THR PRO ALA ALA VAL ALA SER ASN SEQRES 17 A 373 GLU ALA VAL ARG GLN GLY TRP LYS LEU TRP GLN GLY LEU SEQRES 18 A 373 LEU PRO GLU GLU CYS THR LYS SER TYR PRO THR GLU PRO SEQRES 19 A 373 TRP ARG CYS TYR TYR GLY TYR ARG LEU TYR PRO THR LEU SEQRES 20 A 373 LYS THR PRO LEU PHE VAL PHE GLN TRP LEU PHE ASP GLU SEQRES 21 A 373 ALA GLN MET ARG VAL ASP ASN VAL GLY ALA PRO VAL THR SEQRES 22 A 373 PRO GLN GLN TRP ASN TYR ILE HIS GLU MET GLY GLY ALA SEQRES 23 A 373 LEU ARG SER SER LEU ASP ASN VAL SER ALA VAL PHE ALA SEQRES 24 A 373 PRO SER CYS ILE GLY HIS GLY VAL LEU PHE LYS ARG ASP SEQRES 25 A 373 TRP VAL ASN ILE LYS ILE ASP ASP ILE SER LEU PRO SER SEQRES 26 A 373 ALA LEU ARG CYS TRP GLU HIS SER THR ARG SER GLY ASN SEQRES 27 A 373 ASN ASN GLY CYS GLY LEU ARG LEU LEU GLU ARG CYS SER SEQRES 28 A 373 TRP PRO GLN CYS ASN HIS SER CYS PRO THR GLY THR HIS SEQRES 29 A 373 HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 373 GLU THR GLY ASP HIS SER ARG SER LEU LYS ARG ALA ASN SEQRES 2 B 373 LEU ALA ASN THR SER ILE THR CYS ASN ASP GLY SER HIS SEQRES 3 B 373 ALA GLY PHE TYR LEU ARG LYS HIS PRO SER SER LYS LYS SEQRES 4 B 373 TRP ILE VAL LEU LEU GLU GLY GLY TRP HIS CYS PHE ASP SEQRES 5 B 373 VAL ARG SER CYS ARG SER ARG TRP MET ARG LEU ARG HIS SEQRES 6 B 373 LEU MET THR SER SER GLN TRP PRO GLU THR ARG ASP VAL SEQRES 7 B 373 GLY GLY ILE LEU SER PRO HIS PRO GLU GLU ASN PRO TYR SEQRES 8 B 373 TRP HIS ASN ALA ASN HIS VAL LEU ILE PRO TYR CYS SER SEQRES 9 B 373 SER ASP SER TRP SER GLY THR ARG THR GLU PRO ASP THR SEQRES 10 B 373 SER ASP ARG GLU ASN SER TRP ARG PHE MET GLY ALA LEU SEQRES 11 B 373 ILE LEU ARG GLN VAL ILE ALA GLU LEU ILE PRO VAL GLY SEQRES 12 B 373 LEU GLY ARG VAL PRO GLY GLY GLU LEU MET LEU VAL GLY SEQRES 13 B 373 SER SER ALA GLY GLY MET GLY VAL MET LEU ASN LEU ASP SEQRES 14 B 373 ARG ILE ARG ASP PHE LEU VAL ASN GLU LYS LYS LEU GLN SEQRES 15 B 373 ILE THR VAL ARG GLY VAL SER ASP SER GLY TRP PHE LEU SEQRES 16 B 373 ASP ARG GLU PRO TYR THR PRO ALA ALA VAL ALA SER ASN SEQRES 17 B 373 GLU ALA VAL ARG GLN GLY TRP LYS LEU TRP GLN GLY LEU SEQRES 18 B 373 LEU PRO GLU GLU CYS THR LYS SER TYR PRO THR GLU PRO SEQRES 19 B 373 TRP ARG CYS TYR TYR GLY TYR ARG LEU TYR PRO THR LEU SEQRES 20 B 373 LYS THR PRO LEU PHE VAL PHE GLN TRP LEU PHE ASP GLU SEQRES 21 B 373 ALA GLN MET ARG VAL ASP ASN VAL GLY ALA PRO VAL THR SEQRES 22 B 373 PRO GLN GLN TRP ASN TYR ILE HIS GLU MET GLY GLY ALA SEQRES 23 B 373 LEU ARG SER SER LEU ASP ASN VAL SER ALA VAL PHE ALA SEQRES 24 B 373 PRO SER CYS ILE GLY HIS GLY VAL LEU PHE LYS ARG ASP SEQRES 25 B 373 TRP VAL ASN ILE LYS ILE ASP ASP ILE SER LEU PRO SER SEQRES 26 B 373 ALA LEU ARG CYS TRP GLU HIS SER THR ARG SER GLY ASN SEQRES 27 B 373 ASN ASN GLY CYS GLY LEU ARG LEU LEU GLU ARG CYS SER SEQRES 28 B 373 TRP PRO GLN CYS ASN HIS SER CYS PRO THR GLY THR HIS SEQRES 29 B 373 HIS HIS HIS HIS HIS HIS HIS HIS HIS MODRES 4UZK ASN A 95 ASN GLYCOSYLATION SITE MODRES 4UZK ASN B 95 ASN GLYCOSYLATION SITE HET NAG A1618 14 HET NAG B1617 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 5 HOH *219(H2 O) HELIX 1 1 ASP A 131 LEU A 142 1 12 HELIX 2 2 ARG A 143 MET A 146 5 4 HELIX 3 3 GLY A 158 SER A 162 5 5 HELIX 4 4 MET A 206 ILE A 219 1 14 HELIX 5 5 PRO A 220 GLY A 222 5 3 HELIX 6 6 SER A 237 ASN A 256 1 20 HELIX 7 7 ALA A 285 GLN A 298 1 14 HELIX 8 8 PRO A 302 TYR A 309 1 8 HELIX 9 9 GLU A 312 TYR A 317 5 6 HELIX 10 10 TYR A 318 TYR A 323 1 6 HELIX 11 11 PRO A 324 LEU A 326 5 3 HELIX 12 12 GLU A 339 ASP A 345 1 7 HELIX 13 13 THR A 352 LEU A 370 1 19 HELIX 14 14 LYS A 389 ASN A 394 5 6 HELIX 15 15 LEU A 402 THR A 413 1 12 HELIX 16 16 ASP B 131 LEU B 142 1 12 HELIX 17 17 ARG B 143 MET B 146 5 4 HELIX 18 18 GLY B 158 SER B 162 5 5 HELIX 19 19 MET B 206 ILE B 219 1 14 HELIX 20 20 SER B 237 ASN B 256 1 20 HELIX 21 21 ALA B 285 GLN B 298 1 14 HELIX 22 22 PRO B 302 LYS B 307 1 6 HELIX 23 23 GLU B 312 TYR B 317 5 6 HELIX 24 24 TYR B 318 TYR B 323 1 6 HELIX 25 25 PRO B 324 LEU B 326 5 3 HELIX 26 26 GLU B 339 ASP B 345 1 7 HELIX 27 27 THR B 352 LEU B 370 1 19 HELIX 28 28 LYS B 389 ASN B 394 5 6 HELIX 29 29 LEU B 402 THR B 413 1 12 SHEET 1 AA10 THR A 154 ARG A 155 0 SHEET 2 AA10 LEU A 88 ASN A 92 -1 O LEU A 88 N ARG A 155 SHEET 3 AA10 GLY A 107 ARG A 111 -1 O PHE A 108 N ALA A 91 SHEET 4 AA10 ASN A 175 ILE A 179 -1 O HIS A 176 N ARG A 111 SHEET 5 AA10 LYS A 118 LEU A 123 1 O LYS A 118 N ASN A 175 SHEET 6 AA10 GLY A 229 SER A 236 1 O GLU A 230 N TRP A 119 SHEET 7 AA10 ILE A 262 ASP A 269 1 O THR A 263 N LEU A 231 SHEET 8 AA10 LEU A 330 PHE A 333 1 O PHE A 331 N SER A 268 SHEET 9 AA10 VAL A 376 ALA A 378 1 N PHE A 377 O VAL A 332 SHEET 10 AA10 ARG A 601 LEU A 603 1 O LEU A 602 N ALA A 378 SHEET 1 AB 2 PHE A 337 ASP A 338 0 SHEET 2 AB 2 ILE A 382 GLY A 383 1 N GLY A 383 O PHE A 337 SHEET 1 AC 2 LYS A 396 ILE A 397 0 SHEET 2 AC 2 ILE A 400 SER A 401 -1 O ILE A 400 N ILE A 397 SHEET 1 BA10 THR B 154 ARG B 155 0 SHEET 2 BA10 LEU B 88 ASN B 92 -1 O LEU B 88 N ARG B 155 SHEET 3 BA10 GLY B 107 ARG B 111 -1 O PHE B 108 N ALA B 91 SHEET 4 BA10 ASN B 175 ILE B 179 -1 O HIS B 176 N ARG B 111 SHEET 5 BA10 LYS B 118 LEU B 123 1 O LYS B 118 N ASN B 175 SHEET 6 BA10 GLY B 229 SER B 236 1 O GLU B 230 N TRP B 119 SHEET 7 BA10 ILE B 262 ASP B 269 1 O THR B 263 N LEU B 231 SHEET 8 BA10 LEU B 330 PHE B 333 1 O PHE B 331 N SER B 268 SHEET 9 BA10 VAL B 376 ALA B 378 1 N PHE B 377 O VAL B 332 SHEET 10 BA10 ARG B 601 LEU B 603 1 O LEU B 602 N ALA B 378 SHEET 1 BB 2 PHE B 337 ASP B 338 0 SHEET 2 BB 2 ILE B 382 GLY B 383 1 N GLY B 383 O PHE B 337 SHEET 1 BC 2 LYS B 396 ILE B 397 0 SHEET 2 BC 2 ILE B 400 SER B 401 -1 O ILE B 400 N ILE B 397 SSBOND 1 CYS A 100 CYS A 182 1555 1555 2.17 SSBOND 2 CYS A 129 CYS A 135 1555 1555 2.21 SSBOND 3 CYS A 305 CYS A 316 1555 1555 2.10 SSBOND 4 CYS A 381 CYS A 615 1555 1555 2.09 SSBOND 5 CYS A 408 CYS B 408 1555 1555 2.08 SSBOND 6 CYS A 606 CYS A 611 1555 1555 2.05 SSBOND 7 CYS B 100 CYS B 182 1555 1555 2.20 SSBOND 8 CYS B 129 CYS B 135 1555 1555 2.18 SSBOND 9 CYS B 305 CYS B 316 1555 1555 2.08 SSBOND 10 CYS B 381 CYS B 615 1555 1555 2.09 SSBOND 11 CYS B 606 CYS B 611 1555 1555 2.04 LINK ND2 ASN A 95 C1 NAG A1618 1555 1555 1.45 LINK ND2 ASN B 95 C1 NAG B1617 1555 1555 1.44 CRYST1 59.252 93.103 142.124 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016877 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007036 0.00000 MTRIX1 1 -1.000000 0.010000 -0.009000 -35.83600 1 MTRIX2 1 -0.010000 -0.152000 0.988000 26.94600 1 MTRIX3 1 0.008000 0.988000 0.152000 -23.01900 1