HEADER RNA BINDING PROTEIN 09-SEP-14 4UZX TITLE HIGH-RESOLUTION NMR STRUCTURES OF THE DOMAINS OF SACCHAROMYCES TITLE 2 CEREVISIAE THO1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN THO1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 119-183; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: MODIFIED PRSETA KEYWDS RNA BINDING PROTEIN, THO1 EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.O.B.JACOBSEN,M.D.ALLEN,S.M.V.FREUND,M.BYCROFT REVDAT 5 15-MAY-24 4UZX 1 REMARK REVDAT 4 29-JUN-16 4UZX 1 JRNL REVDAT 3 08-JUN-16 4UZX 1 JRNL REVDAT 2 27-APR-16 4UZX 1 ATOM TER MASTER REVDAT 1 17-DEC-14 4UZX 0 JRNL AUTH J.O.B.JACOBSEN,M.D.ALLEN,S.M.V.FREUND,M.BYCROFT JRNL TITL HIGH-RESOLUTION NMR STRUCTURES OF THE DOMAINS OF JRNL TITL 2 SACCHAROMYCES CEREVISIAE THO1. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 72 500 2016 JRNL REFN ESSN 2053-230X JRNL PMID 27303905 JRNL DOI 10.1107/S2053230X16007597 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- KUNSTLEVE, REMARK 3 JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE,SIMONSON, REMARK 3 WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE REMARK 4 REMARK 4 4UZX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1290061726. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293.0 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 95% WATER/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANSIG, CNS REMARK 210 METHOD USED : CNS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NO VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 136 H ALA A 140 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 118 123.77 63.18 REMARK 500 1 ALA A 119 -178.06 60.81 REMARK 500 1 GLN A 145 175.29 -49.23 REMARK 500 2 SER A 118 143.21 -176.69 REMARK 500 2 ALA A 119 71.37 61.66 REMARK 500 2 GLN A 145 169.25 -45.46 REMARK 500 2 VAL A 178 130.95 -39.99 REMARK 500 3 SER A 118 52.04 -97.75 REMARK 500 3 ALA A 119 -164.48 -172.76 REMARK 500 3 GLN A 145 167.13 -44.49 REMARK 500 3 VAL A 178 -67.94 -105.60 REMARK 500 3 LYS A 181 -72.33 66.06 REMARK 500 3 ASN A 182 -43.33 -131.63 REMARK 500 4 ARG A 180 -171.83 47.77 REMARK 500 5 SER A 118 117.21 62.24 REMARK 500 5 ALA A 119 151.60 62.39 REMARK 500 5 VAL A 178 37.56 -65.07 REMARK 500 5 ARG A 180 -83.41 155.21 REMARK 500 6 SER A 118 162.85 61.80 REMARK 500 6 ALA A 119 69.96 62.03 REMARK 500 6 ARG A 180 168.04 58.09 REMARK 500 7 ALA A 119 77.75 61.25 REMARK 500 7 GLN A 145 70.38 -68.15 REMARK 500 7 ASP A 146 109.92 58.20 REMARK 500 7 VAL A 178 35.55 -60.35 REMARK 500 7 LYS A 181 109.96 66.48 REMARK 500 8 SER A 118 -45.51 -155.56 REMARK 500 8 GLN A 145 164.95 -43.92 REMARK 500 8 ASN A 168 52.65 -117.01 REMARK 500 8 ARG A 180 -84.24 -57.13 REMARK 500 8 LYS A 181 167.21 172.84 REMARK 500 9 GLN A 145 159.44 -42.72 REMARK 500 9 ASN A 168 50.09 -118.90 REMARK 500 10 SER A 118 118.11 62.67 REMARK 500 10 VAL A 178 -106.89 -58.34 REMARK 500 10 ARG A 180 -55.83 162.40 REMARK 500 11 SER A 118 -38.70 -177.72 REMARK 500 11 VAL A 178 163.30 84.05 REMARK 500 11 ARG A 180 127.28 -32.44 REMARK 500 11 LYS A 181 -47.94 -178.28 REMARK 500 11 ASN A 182 -175.19 47.14 REMARK 500 12 ALA A 119 57.30 -115.98 REMARK 500 12 GLN A 145 171.28 -46.51 REMARK 500 12 VAL A 178 -79.47 -84.79 REMARK 500 12 ARG A 180 -92.06 53.60 REMARK 500 12 LYS A 181 -87.88 179.32 REMARK 500 13 SER A 118 -66.20 69.69 REMARK 500 13 VAL A 178 158.15 -47.47 REMARK 500 14 SER A 118 -28.32 86.30 REMARK 500 14 ALA A 119 154.70 62.13 REMARK 500 REMARK 500 THIS ENTRY HAS 85 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UZM RELATED DB: PDB REMARK 900 SHOTGUN PROTEOLYSIS: A PRACTICAL APPLICATION REMARK 900 RELATED ID: 4UZW RELATED DB: PDB REMARK 900 HIGH-RESOLUTION NMR STRUCTURES OF THE DOMAINS OF SACCHAROMYCES REMARK 900 CEREVISIAE THO1 REMARK 900 RELATED ID: 25214 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 GLY-SER AT THE N-TERMINUS RESULTS FROM CLONING DBREF 4UZX A 119 183 UNP P40040 THO1_YEAST 119 183 SEQADV 4UZX GLY A 117 UNP P40040 EXPRESSION TAG SEQADV 4UZX SER A 118 UNP P40040 EXPRESSION TAG SEQRES 1 A 67 GLY SER ALA LEU SER PRO GLU GLU ILE LYS ALA LYS ALA SEQRES 2 A 67 LEU ASP LEU LEU ASN LYS LYS LEU HIS ARG ALA ASN LYS SEQRES 3 A 67 PHE GLY GLN ASP GLN ALA ASP ILE ASP SER LEU GLN ARG SEQRES 4 A 67 GLN ILE ASN ARG VAL GLU LYS PHE GLY VAL ASP LEU ASN SEQRES 5 A 67 SER LYS LEU ALA GLU GLU LEU GLY LEU VAL SER ARG LYS SEQRES 6 A 67 ASN GLU HELIX 1 1 SER A 121 GLY A 144 1 24 HELIX 2 2 ASP A 146 PHE A 163 1 18 HELIX 3 3 SER A 169 GLY A 176 1 8 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1