HEADER MOTOR PROTEIN 09-SEP-14 4UZZ TITLE CRYSTAL STRUCTURE OF THE TTIFT52-46 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTRAFLAGELLAR TRANSPORT COMPLEX B PROTEIN 46 COMPND 3 CARBOXY-TERMINAL PROTEIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: C-TERMINAL DOMAIN, RESIDUES 221-332; COMPND 6 SYNONYM: INTRAFLAGELLAR TRANSPORT PROTEIN 46; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: INTRAFLAGELLAR TRANSPORTER-LIKE PROTEIN; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: C-TERMINAL DOMAIN, RESIDUES 371-434; COMPND 12 SYNONYM: INTRAFLAGELLAR TRANSPORT PROTEIN 52; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TETRAHYMENA THERMOPHILA; SOURCE 3 ORGANISM_TAXID: 5911; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: TETRAHYMENA THERMOPHILA; SOURCE 9 ORGANISM_TAXID: 5911; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS MOTOR PROTEIN, CILIUM, IFT, INTRACELLULAR TRANSPORT, FLAGELLUM EXPDTA X-RAY DIFFRACTION AUTHOR P.BRAEUER,M.TASCHNER,E.LORENTZEN REVDAT 1 05-NOV-14 4UZZ 0 JRNL AUTH M.TASCHNER,F.KOTSIS,P.BRAEUER,E.W.KUEHN,E.LORENTZEN JRNL TITL CRYSTAL STRUCTURES OF IFT70/52 AND IFT52/46 PROVIDE INSIGHT JRNL TITL 2 INTO INTRAFLAGELLAR TRANSPORT B CORE COMPLEX ASSEMBLY. JRNL REF J.CELL BIOL. V. 207 269 2014 JRNL REFN ISSN 0021-9525 JRNL PMID 25349261 JRNL DOI 10.1083/JCB.201408002 REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.318 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.197 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.33 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.91 REMARK 3 NUMBER OF REFLECTIONS : 17159 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.2406 REMARK 3 R VALUE (WORKING SET) : 0.2393 REMARK 3 FREE R VALUE : 0.2635 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 878 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.2040 - 4.2100 1.00 2898 152 0.1957 0.2085 REMARK 3 2 4.2100 - 3.3421 1.00 2792 133 0.2521 0.3009 REMARK 3 3 3.3421 - 2.9197 0.99 2751 150 0.3048 0.3459 REMARK 3 4 2.9197 - 2.6528 0.99 2678 156 0.3204 0.3609 REMARK 3 5 2.6528 - 2.4627 0.99 2709 155 0.3574 0.4070 REMARK 3 6 2.4627 - 2.3175 0.90 2453 132 0.3901 0.3912 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.32 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.81 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1397 REMARK 3 ANGLE : 1.219 1898 REMARK 3 CHIRALITY : 0.043 216 REMARK 3 PLANARITY : 0.005 248 REMARK 3 DIHEDRAL : 17.786 511 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UZZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-SEP-14. REMARK 100 THE PDBE ID CODE IS EBI-61727. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL(PILATUS 6M) REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17160 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.32 REMARK 200 RESOLUTION RANGE LOW (A) : 40.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.2 REMARK 200 R MERGE (I) : 0.07 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.4 REMARK 200 R MERGE FOR SHELL (I) : 1.50 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.6 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM TRISD PH 8.2, 0.6M TRI-SODIUM- REMARK 280 CITRATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.65133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.82567 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.82567 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 63.65133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 232 REMARK 465 GLN A 341 REMARK 465 GLN A 342 REMARK 465 ASN A 343 REMARK 465 LYS A 344 REMARK 465 ASN A 345 REMARK 465 ASP A 346 REMARK 465 GLY A 347 REMARK 465 GLY B 536 REMARK 465 ALA B 537 REMARK 465 ASN B 603 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 237 CG CD CE NZ REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 GLU A 273 CG CD OE1 OE2 REMARK 470 GLN A 283 CG CD OE1 NE2 REMARK 470 LYS A 286 CG CD CE NZ REMARK 470 LEU A 292 CG CD1 CD2 REMARK 470 GLU B 541 CG CD OE1 OE2 REMARK 470 LYS B 546 CG CD CE NZ REMARK 470 LYS B 579 CG CD CE NZ REMARK 470 ARG B 589 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 566 O HIS B 582 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 294 76.22 -59.26 REMARK 500 ASN A 295 -178.67 -68.80 REMARK 500 SER B 539 36.12 -141.46 REMARK 500 ASP B 540 46.72 -107.16 REMARK 500 ASN B 580 79.10 -105.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 293 PHE A 294 136.76 REMARK 500 ASP B 540 GLU B 541 142.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 GAAS IS A LEFTOVER SEQUENCE FROM THE N-TERMINAL AFFINITY TAG DBREF 4UZZ A 236 347 UNP Q23KH7 Q23KH7_TETTS 221 332 DBREF 4UZZ B 540 603 UNP I7LT74 I7LT74_TETTS 371 434 SEQADV 4UZZ GLY A 232 UNP Q23KH7 EXPRESSION TAG SEQADV 4UZZ ALA A 233 UNP Q23KH7 EXPRESSION TAG SEQADV 4UZZ ALA A 234 UNP Q23KH7 EXPRESSION TAG SEQADV 4UZZ SER A 235 UNP Q23KH7 EXPRESSION TAG SEQADV 4UZZ GLY B 536 UNP I7LT74 EXPRESSION TAG SEQADV 4UZZ ALA B 537 UNP I7LT74 EXPRESSION TAG SEQADV 4UZZ ALA B 538 UNP I7LT74 EXPRESSION TAG SEQADV 4UZZ SER B 539 UNP I7LT74 EXPRESSION TAG SEQRES 1 A 116 GLY ALA ALA SER PRO LYS GLN ILE GLN MET TRP ILE ASN SEQRES 2 A 116 ASN VAL ALA GLU ILE ARG LYS THR LYS GLN PRO HIS SER SEQRES 3 A 116 VAL SER TYR THR LYS PRO MET PRO GLU ILE ASP GLU LEU SEQRES 4 A 116 MET GLN GLU TRP PRO GLN GLU ILE GLU GLU ILE LEU GLN SEQRES 5 A 116 HIS LEU LYS ILE PRO SER GLU GLU LEU ASP PHE ASN LEU SEQRES 6 A 116 SER ASP PHE CYS LYS LEU ALA CYS ALA ILE LEU ASP ILE SEQRES 7 A 116 PRO VAL HIS ASP GLN PRO ASN GLU SER ASN VAL ILE GLU SEQRES 8 A 116 SER LEU HIS VAL LEU PHE THR LEU TYR SER GLU PHE LYS SEQRES 9 A 116 SER ASN GLN HIS PHE GLN GLN ASN LYS ASN ASP GLY SEQRES 1 B 68 GLY ALA ALA SER ASP GLU PHE ALA SER GLU LYS VAL ARG SEQRES 2 B 68 LEU ALA GLN LEU THR ASN LYS CYS ASN ASN ASN ASP LEU SEQRES 3 B 68 ASP TYR TYR ILE LYS GLU SER GLY ASP ILE LEU GLY VAL SEQRES 4 B 68 THR ASP LYS VAL LYS ASN LYS HIS ASP ALA LYS ALA ILE SEQRES 5 B 68 LEU ARG TYR VAL LEU GLU GLU LEU ILE ASN PHE LYS LYS SEQRES 6 B 68 LEU ASN ASN FORMUL 3 HOH *3(H2 O) HELIX 1 1 SER A 235 GLN A 254 1 20 HELIX 2 2 ASP A 268 GLN A 272 5 5 HELIX 3 3 PRO A 275 GLN A 283 1 9 HELIX 4 4 ASN A 295 ASP A 308 1 14 HELIX 5 5 SER A 318 HIS A 339 1 22 HELIX 6 6 ASP B 540 LYS B 555 1 16 HELIX 7 7 ASN B 557 ASN B 559 5 3 HELIX 8 8 ASP B 560 LEU B 572 1 13 HELIX 9 9 ASP B 583 LYS B 599 1 17 CISPEP 1 GLN A 314 PRO A 315 0 -5.17 CRYST1 84.394 84.394 95.477 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011849 0.006841 0.000000 0.00000 SCALE2 0.000000 0.013682 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010474 0.00000