HEADER HYDROLASE 17-SEP-14 4V0K TITLE CRYSTAL STRUCTURE OF THE CRARL6DN IN THE GDP BOUND FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARF-LIKE SMALL GTPASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: GTPASE, RESIDUES 16-180; COMPND 5 SYNONYM: ARL6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 3 ORGANISM_TAXID: 3055; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PEC-A-HT-HIS KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.MOURAO,E.LORENTZEN REVDAT 4 08-MAY-24 4V0K 1 REMARK LINK REVDAT 3 17-DEC-14 4V0K 1 JRNL REVDAT 2 26-NOV-14 4V0K 1 JRNL REVDAT 1 19-NOV-14 4V0K 0 JRNL AUTH A.MOURAO,A.R.NAGER,M.V.NACHURY,E.LORENTZEN JRNL TITL STRUCTURAL BASIS FOR MEMBRANE TARGETING OF THE BBSOME BY JRNL TITL 2 ARL6 JRNL REF NAT.STRUCT.MOL.BIOL. V. 21 1035 2014 JRNL REFN ISSN 1545-9993 JRNL PMID 25402481 JRNL DOI 10.1038/NSMB.2920 REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 83301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8105 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5315 - 4.4656 1.00 5156 270 0.1806 0.1829 REMARK 3 2 4.4656 - 3.5448 1.00 5153 272 0.1434 0.1502 REMARK 3 3 3.5448 - 3.0968 1.00 5159 275 0.1487 0.1944 REMARK 3 4 3.0968 - 2.8137 1.00 5155 275 0.1604 0.1734 REMARK 3 5 2.8137 - 2.6120 1.00 5158 272 0.1537 0.1842 REMARK 3 6 2.6120 - 2.4580 1.00 5172 273 0.1446 0.1818 REMARK 3 7 2.4580 - 2.3349 1.00 5146 276 0.1327 0.1920 REMARK 3 8 2.3349 - 2.2333 1.00 5154 269 0.1368 0.1783 REMARK 3 9 2.2333 - 2.1473 1.00 5176 268 0.1294 0.1618 REMARK 3 10 2.1473 - 2.0732 1.00 5147 272 0.1251 0.1582 REMARK 3 11 2.0732 - 2.0084 1.00 5161 277 0.1242 0.1812 REMARK 3 12 2.0084 - 1.9510 1.00 5168 275 0.1231 0.1573 REMARK 3 13 1.9510 - 1.8996 1.00 5168 272 0.1285 0.1604 REMARK 3 14 1.8996 - 1.8533 1.00 5155 266 0.1303 0.1825 REMARK 3 15 1.8533 - 1.8111 1.00 5139 272 0.1316 0.1760 REMARK 3 16 1.8111 - 1.7726 1.00 5148 265 0.1363 0.1874 REMARK 3 17 1.7726 - 1.7371 1.00 5174 269 0.1403 0.1819 REMARK 3 18 1.7371 - 1.7043 1.00 5207 267 0.1493 0.1690 REMARK 3 19 1.7043 - 1.6739 1.00 5110 265 0.1495 0.1931 REMARK 3 20 1.6739 - 1.6455 1.00 5168 271 0.1615 0.1761 REMARK 3 21 1.6455 - 1.6190 1.00 5196 273 0.1782 0.2206 REMARK 3 22 1.6190 - 1.5941 1.00 5193 265 0.1885 0.2296 REMARK 3 23 1.5941 - 1.5706 1.00 5137 267 0.2024 0.2119 REMARK 3 24 1.5706 - 1.5485 1.00 5162 267 0.2181 0.2607 REMARK 3 25 1.5485 - 1.5276 1.00 5100 274 0.2250 0.2679 REMARK 3 26 1.5276 - 1.5077 1.00 5238 274 0.2437 0.2833 REMARK 3 27 1.5077 - 1.4889 1.00 5093 270 0.2529 0.2953 REMARK 3 28 1.4889 - 1.4710 1.00 5163 274 0.2507 0.2626 REMARK 3 29 1.4710 - 1.4538 1.00 5179 270 0.2695 0.2858 REMARK 3 30 1.4538 - 1.4375 0.91 4652 250 0.2861 0.2874 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2552 REMARK 3 ANGLE : 1.301 3482 REMARK 3 CHIRALITY : 0.080 397 REMARK 3 PLANARITY : 0.005 440 REMARK 3 DIHEDRAL : 14.157 940 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4V0K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1290061730. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83301 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.800 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% POLYETHYLENE GLYCOL 3350, 0.1M REMARK 280 HEPES PH7.5, 5MM CDCL2, 5MM MGCL2, 5MM NICL2, 5MM COCL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 123.58467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.79233 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.79233 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 123.58467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 12 REMARK 465 ALA A 13 REMARK 465 ALA A 14 REMARK 465 SER A 15 REMARK 465 LYS A 16 REMARK 465 PRO A 39 REMARK 465 ARG A 40 REMARK 465 PRO A 41 REMARK 465 ARG A 42 REMARK 465 GLN A 43 REMARK 465 ALA A 44 REMARK 465 ALA A 45 REMARK 465 GLU A 46 REMARK 465 VAL A 47 REMARK 465 ALA A 48 REMARK 465 PRO A 49 REMARK 465 THR A 50 REMARK 465 VAL A 51 REMARK 465 GLY B 12 REMARK 465 ALA B 13 REMARK 465 ALA B 14 REMARK 465 SER B 15 REMARK 465 LYS B 16 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 ARG A 75 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 LYS B 17 CG CD CE NZ REMARK 470 ARG B 40 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 42 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 43 CG CD OE1 NE2 REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 LYS B 99 CG CD CE NZ REMARK 470 LYS B 170 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR B 78 O HOH B 2110 1.82 REMARK 500 O HOH B 2237 O HOH B 2238 1.98 REMARK 500 O HOH B 2164 O HOH B 2176 1.98 REMARK 500 O HOH A 2186 O HOH A 2187 2.01 REMARK 500 O HOH A 2188 O HOH A 2189 2.01 REMARK 500 O HOH B 2236 O HOH B 2238 2.02 REMARK 500 N GLN B 82 O HOH B 2110 2.02 REMARK 500 O HOH B 2169 O HOH B 2177 2.04 REMARK 500 O HOH B 2246 O HOH B 2248 2.06 REMARK 500 O HOH A 2119 O HOH A 2201 2.07 REMARK 500 O HOH A 2100 O HOH A 2169 2.07 REMARK 500 O HOH A 2042 O HOH A 2044 2.07 REMARK 500 O HOH A 2042 O HOH A 2043 2.08 REMARK 500 O HOH B 2005 O HOH B 2136 2.09 REMARK 500 O HOH A 2093 O HOH A 2157 2.09 REMARK 500 O HOH B 2135 O HOH B 2220 2.09 REMARK 500 O HOH A 2107 O HOH A 2179 2.09 REMARK 500 O HOH A 2157 O HOH B 2227 2.10 REMARK 500 O HOH B 2058 O HOH B 2059 2.10 REMARK 500 O HOH A 2004 O HOH A 2005 2.10 REMARK 500 O HOH B 2211 O HOH B 2213 2.10 REMARK 500 O HOH A 2185 O HOH A 2186 2.10 REMARK 500 O HOH A 2133 O HOH A 2166 2.10 REMARK 500 O HOH B 2143 O HOH B 2232 2.10 REMARK 500 O HOH A 2165 O HOH A 2166 2.11 REMARK 500 O HOH B 2098 O HOH B 2183 2.11 REMARK 500 O HOH B 2065 O HOH B 2105 2.11 REMARK 500 OE1 GLU A 140 O HOH A 2160 2.13 REMARK 500 O HOH B 2206 O HOH B 2207 2.13 REMARK 500 NH1 ARG B 85 O HOH B 2121 2.13 REMARK 500 O HOH B 2038 O HOH B 2049 2.13 REMARK 500 O HOH A 2124 O HOH A 2155 2.14 REMARK 500 O HOH A 2218 O HOH A 2219 2.14 REMARK 500 O HOH B 2164 O HOH B 2169 2.14 REMARK 500 O HOH A 2139 O HOH A 2143 2.14 REMARK 500 O HOH A 2208 O HOH B 2194 2.15 REMARK 500 O HOH B 2040 O HOH B 2142 2.15 REMARK 500 O HOH B 2232 O HOH B 2234 2.15 REMARK 500 O HOH A 2186 O HOH B 2191 2.15 REMARK 500 O HOH A 2016 O HOH A 2024 2.15 REMARK 500 O HOH A 2020 O HOH A 2028 2.16 REMARK 500 O HOH A 2174 O HOH A 2182 2.16 REMARK 500 O1A GDP A 700 O HOH A 2023 2.16 REMARK 500 O HOH A 2003 O HOH A 2009 2.17 REMARK 500 O HOH B 2010 O HOH B 2015 2.17 REMARK 500 O HOH B 2175 O HOH B 2176 2.18 REMARK 500 O HOH B 2163 O HOH B 2164 2.18 REMARK 500 O HOH B 2070 O HOH B 2168 2.19 REMARK 500 O HOH B 2043 O HOH B 2067 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2073 O HOH B 2162 4655 1.99 REMARK 500 OE1 GLU B 177 O HOH B 2092 4655 1.99 REMARK 500 O HOH B 2175 O HOH B 2231 4545 2.11 REMARK 500 O HOH B 2164 O HOH B 2231 4545 2.13 REMARK 500 O HOH A 2032 O HOH A 2176 6654 2.13 REMARK 500 O HOH B 2169 O HOH B 2231 4545 2.14 REMARK 500 O HOH B 2091 O HOH B 2231 4545 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 70 41.70 -95.95 REMARK 500 ALA A 73 -126.64 52.89 REMARK 500 LYS B 38 83.92 -162.21 REMARK 500 PRO B 41 31.56 -57.71 REMARK 500 ARG B 42 -93.56 68.34 REMARK 500 MET B 70 42.94 -95.91 REMARK 500 ALA B 73 -126.94 52.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A3252 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH A3253 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH B2017 DISTANCE = 6.23 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1182 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 31 OG1 REMARK 620 2 GDP A 700 O3B 83.6 REMARK 620 3 CD A1183 CD 91.0 101.0 REMARK 620 4 HOH A2023 O 92.5 75.7 174.8 REMARK 620 5 HOH A2059 O 175.4 92.0 91.3 85.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1183 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 69 OD1 REMARK 620 2 HOH A2056 O 135.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1184 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 88 OD1 REMARK 620 2 ASP A 88 OD2 50.4 REMARK 620 3 HOH A2008 O 88.2 71.5 REMARK 620 4 HOH A2115 O 72.0 121.6 101.4 REMARK 620 5 HOH A2117 O 81.4 71.6 139.2 112.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1181 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 107 OD2 REMARK 620 2 ASP A 107 OD1 53.2 REMARK 620 3 HIS A 111 NE2 92.5 104.2 REMARK 620 4 ASP A 169 OD2 164.7 140.6 78.1 REMARK 620 5 ASP A 169 OD1 144.2 91.6 103.6 50.9 REMARK 620 6 ASP A 173 OD2 93.5 134.0 108.4 78.3 110.7 REMARK 620 7 ASP A 173 OD1 78.1 86.3 157.9 106.3 95.4 53.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1185 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 108 OE1 REMARK 620 2 GLU A 108 O 97.3 REMARK 620 3 HOH A2092 O 132.1 98.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1186 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2117 O REMARK 620 2 HOH A2217 O 81.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B1182 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 31 OG1 REMARK 620 2 GDP B 700 O3B 88.9 REMARK 620 3 HOH B2026 O 89.0 93.6 REMARK 620 4 HOH B2027 O 90.9 90.3 176.1 REMARK 620 5 HOH B2028 O 88.5 176.7 88.5 87.6 REMARK 620 6 HOH B2080 O 178.4 92.6 90.3 89.6 90.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B1184 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 88 OD2 REMARK 620 2 ASP B 88 OD1 47.4 REMARK 620 3 HOH B2003 O 67.9 80.7 REMARK 620 4 HOH B2140 O 108.1 65.3 80.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B1181 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 107 OD1 REMARK 620 2 ASP B 107 OD2 52.4 REMARK 620 3 HIS B 111 NE2 101.4 91.2 REMARK 620 4 ASP B 169 OD1 93.0 144.3 105.9 REMARK 620 5 ASP B 169 OD2 140.2 165.7 79.9 49.9 REMARK 620 6 ASP B 173 OD2 134.3 94.6 111.0 107.5 78.3 REMARK 620 7 ASP B 173 OD1 86.5 78.1 159.1 92.9 106.4 53.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 1181 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1181 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 1182 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1182 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1186 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1183 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1184 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1185 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 1183 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 1184 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4V0M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BBS1N IN COMPLEX WITH ARL6DN REMARK 900 RELATED ID: 4V0N RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BBS1N IN COMPLEX WITH ARL6DN, SOAKED WITH REMARK 900 MERCURY REMARK 900 RELATED ID: 4V0O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BBS1N IN COMPLEX WITH ARL6DN, SOAKED WITH LEAD DBREF 4V0K A 16 180 UNP A8JF99 A8JF99_CHLRE 16 180 DBREF 4V0K B 16 180 UNP A8JF99 A8JF99_CHLRE 16 180 SEQADV 4V0K GLY A 12 UNP A8JF99 EXPRESSION TAG SEQADV 4V0K ALA A 13 UNP A8JF99 EXPRESSION TAG SEQADV 4V0K ALA A 14 UNP A8JF99 EXPRESSION TAG SEQADV 4V0K SER A 15 UNP A8JF99 EXPRESSION TAG SEQADV 4V0K GLY B 12 UNP A8JF99 EXPRESSION TAG SEQADV 4V0K ALA B 13 UNP A8JF99 EXPRESSION TAG SEQADV 4V0K ALA B 14 UNP A8JF99 EXPRESSION TAG SEQADV 4V0K SER B 15 UNP A8JF99 EXPRESSION TAG SEQRES 1 A 169 GLY ALA ALA SER LYS LYS VAL ASN VAL LEU VAL VAL GLY SEQRES 2 A 169 LEU ASP ASN SER GLY LYS THR THR ILE ILE GLU ARG LEU SEQRES 3 A 169 LYS PRO ARG PRO ARG GLN ALA ALA GLU VAL ALA PRO THR SEQRES 4 A 169 VAL GLY PHE THR VAL ASP GLU VAL GLU LYS GLY PRO LEU SEQRES 5 A 169 THR PHE THR VAL PHE ASP MET SER GLY ALA GLY ARG TYR SEQRES 6 A 169 ARG THR LEU TRP GLU GLN TYR TYR ARG GLU ALA ASP ALA SEQRES 7 A 169 VAL VAL PHE VAL VAL ASP SER ALA ASP LYS LEU ARG MET SEQRES 8 A 169 VAL VAL ALA ARG ASP GLU MET GLU HIS MET LEU LYS HIS SEQRES 9 A 169 SER ASN MET ARG LYS VAL PRO ILE LEU TYR PHE ALA ASN SEQRES 10 A 169 LYS LYS ASP LEU PRO VAL ALA MET PRO PRO VAL GLU ILE SEQRES 11 A 169 ALA GLN ALA LEU GLY LEU ASP ASP ILE LYS ASP ARG PRO SEQRES 12 A 169 TRP GLN ILE VAL PRO SER ASN GLY LEU THR GLY GLU GLY SEQRES 13 A 169 VAL ASP LYS GLY ILE ASP TRP LEU ALA GLU ARG LEU SER SEQRES 1 B 169 GLY ALA ALA SER LYS LYS VAL ASN VAL LEU VAL VAL GLY SEQRES 2 B 169 LEU ASP ASN SER GLY LYS THR THR ILE ILE GLU ARG LEU SEQRES 3 B 169 LYS PRO ARG PRO ARG GLN ALA ALA GLU VAL ALA PRO THR SEQRES 4 B 169 VAL GLY PHE THR VAL ASP GLU VAL GLU LYS GLY PRO LEU SEQRES 5 B 169 THR PHE THR VAL PHE ASP MET SER GLY ALA GLY ARG TYR SEQRES 6 B 169 ARG THR LEU TRP GLU GLN TYR TYR ARG GLU ALA ASP ALA SEQRES 7 B 169 VAL VAL PHE VAL VAL ASP SER ALA ASP LYS LEU ARG MET SEQRES 8 B 169 VAL VAL ALA ARG ASP GLU MET GLU HIS MET LEU LYS HIS SEQRES 9 B 169 SER ASN MET ARG LYS VAL PRO ILE LEU TYR PHE ALA ASN SEQRES 10 B 169 LYS LYS ASP LEU PRO VAL ALA MET PRO PRO VAL GLU ILE SEQRES 11 B 169 ALA GLN ALA LEU GLY LEU ASP ASP ILE LYS ASP ARG PRO SEQRES 12 B 169 TRP GLN ILE VAL PRO SER ASN GLY LEU THR GLY GLU GLY SEQRES 13 B 169 VAL ASP LYS GLY ILE ASP TRP LEU ALA GLU ARG LEU SER HET GDP A 700 28 HET CD A1181 1 HET CD A1182 1 HET CD A1183 1 HET CD A1184 1 HET CD A1185 1 HET CD A1186 1 HET GDP B 700 28 HET CD B1181 1 HET CD B1182 1 HET CD B1183 1 HET CD B1184 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM CD CADMIUM ION FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 CD 10(CD 2+) FORMUL 15 HOH *475(H2 O) HELIX 1 1 GLY A 29 LYS A 38 1 10 HELIX 2 2 GLY A 72 ARG A 75 5 4 HELIX 3 3 TYR A 76 GLU A 81 1 6 HELIX 4 4 GLN A 82 TYR A 84 5 3 HELIX 5 5 ASP A 98 HIS A 115 1 18 HELIX 6 6 PRO A 137 GLY A 146 1 10 HELIX 7 7 LEU A 147 ILE A 150 5 4 HELIX 8 8 GLY A 167 GLU A 177 1 11 HELIX 9 9 GLY B 29 LYS B 38 1 10 HELIX 10 10 GLY B 72 ARG B 75 5 4 HELIX 11 11 TYR B 76 GLN B 82 1 7 HELIX 12 12 ASP B 98 HIS B 115 1 18 HELIX 13 13 PRO B 137 GLY B 146 1 10 HELIX 14 14 LEU B 147 ILE B 150 5 4 HELIX 15 15 GLY B 167 LEU B 179 1 13 SHEET 1 AA 6 VAL A 55 LYS A 60 0 SHEET 2 AA 6 LEU A 63 PHE A 68 -1 O LEU A 63 N LYS A 60 SHEET 3 AA 6 VAL A 18 VAL A 23 1 O VAL A 18 N THR A 64 SHEET 4 AA 6 ALA A 89 ASP A 95 1 O ALA A 89 N LEU A 21 SHEET 5 AA 6 ILE A 123 ASN A 128 1 O LEU A 124 N PHE A 92 SHEET 6 AA 6 TRP A 155 SER A 160 1 O GLN A 156 N TYR A 125 SHEET 1 BA 6 ASP B 56 LYS B 60 0 SHEET 2 BA 6 LEU B 63 VAL B 67 -1 O LEU B 63 N LYS B 60 SHEET 3 BA 6 VAL B 18 VAL B 23 1 O VAL B 18 N THR B 64 SHEET 4 BA 6 ALA B 89 ASP B 95 1 O ALA B 89 N LEU B 21 SHEET 5 BA 6 ILE B 123 ASN B 128 1 O LEU B 124 N PHE B 92 SHEET 6 BA 6 TRP B 155 PRO B 159 1 O GLN B 156 N TYR B 125 LINK OG1 THR A 31 CD CD A1182 1555 1555 2.32 LINK OD1 ASP A 69 CD CD A1183 1555 1555 2.63 LINK OD1 ASP A 88 CD CD A1184 1555 1555 2.64 LINK OD2 ASP A 88 CD CD A1184 1555 1555 2.54 LINK OD2 ASP A 107 CD CD A1181 1555 1555 2.45 LINK OD1 ASP A 107 CD CD A1181 1555 1555 2.48 LINK OE1 GLU A 108 CD CD A1185 1555 1555 2.77 LINK O GLU A 108 CD CD A1185 1555 1555 2.84 LINK NE2 HIS A 111 CD CD A1181 1555 1555 2.37 LINK OD2 ASP A 169 CD CD A1181 6664 1555 2.69 LINK OD1 ASP A 169 CD CD A1181 6664 1555 2.39 LINK OD2 ASP A 173 CD CD A1181 6664 1555 2.46 LINK OD1 ASP A 173 CD CD A1181 6664 1555 2.48 LINK O3B GDP A 700 CD CD A1182 1555 1555 2.39 LINK CD CD A1182 CD CD A1183 1555 1555 2.52 LINK CD CD A1182 O HOH A2023 1555 1555 2.59 LINK CD CD A1182 O HOH A2059 1555 1555 2.42 LINK CD CD A1183 O HOH A2056 1555 1555 2.70 LINK CD CD A1184 O HOH A2008 1555 1555 2.61 LINK CD CD A1184 O HOH A2115 1555 1555 2.64 LINK CD CD A1184 O HOH A2117 1555 1555 2.83 LINK CD CD A1185 O HOH A2092 1555 1555 2.79 LINK CD CD A1186 O HOH A2117 1555 1555 2.56 LINK CD CD A1186 O HOH A2217 1555 1555 2.64 LINK O HOH A2189 CD CD B1183 1555 1555 2.52 LINK OG1 THR B 31 CD CD B1182 1555 1555 2.21 LINK OD2 ASP B 88 CD CD B1184 1555 1555 2.59 LINK OD1 ASP B 88 CD CD B1184 1555 1555 2.84 LINK OD1 ASP B 107 CD CD B1181 4655 1555 2.50 LINK OD2 ASP B 107 CD CD B1181 4655 1555 2.50 LINK NE2 HIS B 111 CD CD B1181 4655 1555 2.36 LINK OD1 ASP B 169 CD CD B1181 1555 1555 2.36 LINK OD2 ASP B 169 CD CD B1181 1555 1555 2.76 LINK OD2 ASP B 173 CD CD B1181 1555 1555 2.42 LINK OD1 ASP B 173 CD CD B1181 1555 1555 2.51 LINK O3B GDP B 700 CD CD B1182 1555 1555 2.17 LINK CD CD B1182 O HOH B2026 1555 1555 2.31 LINK CD CD B1182 O HOH B2027 1555 1555 2.32 LINK CD CD B1182 O HOH B2028 1555 1555 2.26 LINK CD CD B1182 O HOH B2080 1555 1555 2.26 LINK CD CD B1184 O HOH B2003 1555 1555 2.77 LINK CD CD B1184 O HOH B2140 1555 1555 2.71 SITE 1 AC1 20 ASN A 27 SER A 28 GLY A 29 LYS A 30 SITE 2 AC1 20 THR A 31 THR A 32 ASN A 128 LYS A 129 SITE 3 AC1 20 ASP A 131 LEU A 132 ASN A 161 GLY A 162 SITE 4 AC1 20 LEU A 163 CD A1182 HOH A2014 HOH A2023 SITE 5 AC1 20 HOH A2027 HOH A2059 HOH A2220 HOH A2221 SITE 1 AC2 25 ASP B 26 ASN B 27 SER B 28 GLY B 29 SITE 2 AC2 25 LYS B 30 THR B 31 THR B 32 ASN B 128 SITE 3 AC2 25 LYS B 129 ASP B 131 LEU B 132 ASN B 161 SITE 4 AC2 25 GLY B 162 LEU B 163 CD B1182 HOH B2009 SITE 5 AC2 25 HOH B2027 HOH B2031 HOH B2032 HOH B2080 SITE 6 AC2 25 HOH B2244 HOH B2245 HOH B2247 HOH B2248 SITE 7 AC2 25 HOH B2249 SITE 1 AC3 4 ASP B 107 HIS B 111 ASP B 169 ASP B 173 SITE 1 AC4 4 ASP A 107 HIS A 111 ASP A 169 ASP A 173 SITE 1 AC5 6 THR B 31 GDP B 700 HOH B2026 HOH B2027 SITE 2 AC5 6 HOH B2028 HOH B2080 SITE 1 AC6 5 THR A 31 GDP A 700 CD A1183 HOH A2023 SITE 2 AC6 5 HOH A2059 SITE 1 AC7 3 CD A1184 HOH A2117 HOH A2217 SITE 1 AC8 5 LYS A 30 THR A 31 ASP A 69 CD A1182 SITE 2 AC8 5 HOH A2056 SITE 1 AC9 6 LYS A 17 ASP A 88 CD A1186 HOH A2008 SITE 2 AC9 6 HOH A2115 HOH A2117 SITE 1 BC1 5 TRP A 80 TYR A 84 GLU A 108 HIS A 111 SITE 2 BC1 5 HOH A2092 SITE 1 BC2 4 HOH A2189 LYS B 130 ASP B 131 ASN B 161 SITE 1 BC3 4 LYS B 17 ASP B 88 HOH B2003 HOH B2140 CRYST1 65.725 65.725 185.377 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015215 0.008784 0.000000 0.00000 SCALE2 0.000000 0.017569 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005394 0.00000