HEADER HYDROLASE ACTIVATOR 13-OCT-14 4V2O TITLE STRUCTURE OF SAPOSIN B IN COMPLEX WITH CHLOROQUINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAPOSIN-B; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: CEREBROSIDE SULFATE ACTIVATOR, CSACT, DISPERSIN, COMPND 5 SPHINGOLIPID ACTIVATOR PROTEIN 1, SAP-1, SULFATIDE/GM1 ACTIVATOR, COMPND 6 SAPOSIN B; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: SHUFFLE EXPRESS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS HYDROLASE ACTIVATOR, PROTEIN-LIGAND COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.ZUBIETA,X.LAI,R.P.DOYLE REVDAT 3 10-JAN-24 4V2O 1 REMARK REVDAT 2 02-MAR-16 4V2O 1 JRNL REVDAT 1 09-DEC-15 4V2O 0 JRNL AUTH B.P.HUTA,M.R.MEHLENBACHER,Y.NIE,X.LAI,C.ZUBIETA, JRNL AUTH 2 F.BOU-ABDALLAH,R.P.DOYLE JRNL TITL THE LYSOSOMAL PROTEIN SAPOSIN B BINDS CHLOROQUINE. JRNL REF CHEMMEDCHEM V. 11 277 2016 JRNL REFN ISSN 1860-7179 JRNL PMID 26616259 JRNL DOI 10.1002/CMDC.201500494 REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 17711 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 908 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.26 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.59 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2796 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2280 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2648 REMARK 3 BIN R VALUE (WORKING SET) : 0.2279 REMARK 3 BIN FREE R VALUE : 0.2313 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.29 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 148 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1806 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 148 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.24650 REMARK 3 B22 (A**2) : -7.24650 REMARK 3 B33 (A**2) : 14.49290 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.369 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.241 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.188 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.224 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.182 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.919 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1926 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2602 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 696 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 59 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 269 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1926 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 264 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2362 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.13 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.85 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|1 - A|78 } REMARK 3 ORIGIN FOR THE GROUP (A): 4.8160 84.3038 109.5240 REMARK 3 T TENSOR REMARK 3 T11: 0.1029 T22: 0.0876 REMARK 3 T33: -0.0128 T12: 0.0973 REMARK 3 T13: -0.0220 T23: -0.0655 REMARK 3 L TENSOR REMARK 3 L11: 2.6038 L22: 3.2607 REMARK 3 L33: 4.8209 L12: -0.0929 REMARK 3 L13: -0.3043 L23: -1.0059 REMARK 3 S TENSOR REMARK 3 S11: -0.0675 S12: -0.4287 S13: 0.1975 REMARK 3 S21: 0.0897 S22: 0.1495 S23: 0.0135 REMARK 3 S31: -0.3600 S32: -0.3492 S33: -0.0820 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|-2 - B|78 } REMARK 3 ORIGIN FOR THE GROUP (A): 34.3435 69.9897 106.3630 REMARK 3 T TENSOR REMARK 3 T11: 0.0417 T22: 0.3932 REMARK 3 T33: 0.0190 T12: -0.0413 REMARK 3 T13: 0.0869 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 3.9676 L22: 2.8005 REMARK 3 L33: 4.7493 L12: 0.8172 REMARK 3 L13: 0.8640 L23: 1.2795 REMARK 3 S TENSOR REMARK 3 S11: 0.0720 S12: 0.4202 S13: 0.0863 REMARK 3 S21: -0.2737 S22: 0.0916 S23: -0.3922 REMARK 3 S31: -0.4071 S32: 1.1666 S33: -0.1637 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|-2 - C|78 } REMARK 3 ORIGIN FOR THE GROUP (A): -4.3266 82.6001 100.5820 REMARK 3 T TENSOR REMARK 3 T11: 0.1557 T22: 0.2420 REMARK 3 T33: 0.0588 T12: 0.0363 REMARK 3 T13: -0.0718 T23: 0.1135 REMARK 3 L TENSOR REMARK 3 L11: 2.5777 L22: 2.9414 REMARK 3 L33: 6.0411 L12: -0.7454 REMARK 3 L13: -1.0905 L23: -1.7418 REMARK 3 S TENSOR REMARK 3 S11: 0.0175 S12: 0.4835 S13: 0.2014 REMARK 3 S21: -0.0638 S22: 0.3924 S23: 0.2729 REMARK 3 S31: -0.2643 S32: -1.1597 S33: -0.4099 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4V2O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1290061967. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99187 REMARK 200 MONOCHROMATOR : SI(311) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17890 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130 REMARK 200 RESOLUTION RANGE LOW (A) : 38.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 1.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1N69 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, PH 6.0, 30% PEG6000, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.14400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.57200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.57200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 63.14400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 130.42169 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 221.00400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2016 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2020 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2042 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 GLU A 79 REMARK 465 GLU B 79 REMARK 465 GLU C 79 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 GLN B 26 CG CD OE1 NE2 REMARK 470 TYR B 50 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN B 53 CG CD OE1 NE2 REMARK 470 PRO C 41 CG CD REMARK 470 ASP C 45 CG OD1 OD2 REMARK 470 ILE C 46 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 55 -71.17 -42.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY C 40 10.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2010 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A2026 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B2043 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH B3031 DISTANCE = 8.25 ANGSTROMS REMARK 525 HOH B3032 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH B3039 DISTANCE = 7.31 ANGSTROMS REMARK 525 HOH C2010 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH C2035 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH C2036 DISTANCE = 7.05 ANGSTROMS REMARK 525 HOH C2037 DISTANCE = 6.07 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CLQ C 1079 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CLQ B 1079 DBREF 4V2O A 1 79 UNP P07602 SAP_HUMAN 195 273 DBREF 4V2O B 1 79 UNP P07602 SAP_HUMAN 195 273 DBREF 4V2O C 1 79 UNP P07602 SAP_HUMAN 195 273 SEQADV 4V2O GLY A -2 UNP P07602 EXPRESSION TAG SEQADV 4V2O ALA A -1 UNP P07602 EXPRESSION TAG SEQADV 4V2O SER A 0 UNP P07602 EXPRESSION TAG SEQADV 4V2O GLY B -2 UNP P07602 EXPRESSION TAG SEQADV 4V2O ALA B -1 UNP P07602 EXPRESSION TAG SEQADV 4V2O SER B 0 UNP P07602 EXPRESSION TAG SEQADV 4V2O GLY C -2 UNP P07602 EXPRESSION TAG SEQADV 4V2O ALA C -1 UNP P07602 EXPRESSION TAG SEQADV 4V2O SER C 0 UNP P07602 EXPRESSION TAG SEQRES 1 A 82 GLY ALA SER GLY ASP VAL CYS GLN ASP CYS ILE GLN MET SEQRES 2 A 82 VAL THR ASP ILE GLN THR ALA VAL ARG THR ASN SER THR SEQRES 3 A 82 PHE VAL GLN ALA LEU VAL GLU HIS VAL LYS GLU GLU CYS SEQRES 4 A 82 ASP ARG LEU GLY PRO GLY MET ALA ASP ILE CYS LYS ASN SEQRES 5 A 82 TYR ILE SER GLN TYR SER GLU ILE ALA ILE GLN MET MET SEQRES 6 A 82 MET HIS MET GLN PRO LYS GLU ILE CYS ALA LEU VAL GLY SEQRES 7 A 82 PHE CYS ASP GLU SEQRES 1 B 82 GLY ALA SER GLY ASP VAL CYS GLN ASP CYS ILE GLN MET SEQRES 2 B 82 VAL THR ASP ILE GLN THR ALA VAL ARG THR ASN SER THR SEQRES 3 B 82 PHE VAL GLN ALA LEU VAL GLU HIS VAL LYS GLU GLU CYS SEQRES 4 B 82 ASP ARG LEU GLY PRO GLY MET ALA ASP ILE CYS LYS ASN SEQRES 5 B 82 TYR ILE SER GLN TYR SER GLU ILE ALA ILE GLN MET MET SEQRES 6 B 82 MET HIS MET GLN PRO LYS GLU ILE CYS ALA LEU VAL GLY SEQRES 7 B 82 PHE CYS ASP GLU SEQRES 1 C 82 GLY ALA SER GLY ASP VAL CYS GLN ASP CYS ILE GLN MET SEQRES 2 C 82 VAL THR ASP ILE GLN THR ALA VAL ARG THR ASN SER THR SEQRES 3 C 82 PHE VAL GLN ALA LEU VAL GLU HIS VAL LYS GLU GLU CYS SEQRES 4 C 82 ASP ARG LEU GLY PRO GLY MET ALA ASP ILE CYS LYS ASN SEQRES 5 C 82 TYR ILE SER GLN TYR SER GLU ILE ALA ILE GLN MET MET SEQRES 6 C 82 MET HIS MET GLN PRO LYS GLU ILE CYS ALA LEU VAL GLY SEQRES 7 C 82 PHE CYS ASP GLU HET CLQ B1079 22 HET CLQ C1079 44 HETNAM CLQ N4-(7-CHLORO-QUINOLIN-4-YL)-N1,N1-DIETHYL-PENTANE-1,4- HETNAM 2 CLQ DIAMINE HETSYN CLQ CHLOROQUINE FORMUL 4 CLQ 2(C18 H26 CL N3) FORMUL 6 HOH *148(H2 O) HELIX 1 1 GLY A 1 ASN A 21 1 21 HELIX 2 2 THR A 23 CYS A 36 1 14 HELIX 3 3 ASP A 37 GLY A 40 5 4 HELIX 4 4 GLY A 42 HIS A 64 1 23 HELIX 5 5 GLN A 66 VAL A 74 1 9 HELIX 6 6 GLY B -2 GLY B 1 5 4 HELIX 7 7 ASP B 2 ASN B 21 1 20 HELIX 8 8 THR B 23 CYS B 36 1 14 HELIX 9 9 ASP B 37 GLY B 40 5 4 HELIX 10 10 GLY B 42 HIS B 64 1 23 HELIX 11 11 GLN B 66 VAL B 74 1 9 HELIX 12 12 GLY C -2 ASN C 21 1 24 HELIX 13 13 THR C 23 CYS C 36 1 14 HELIX 14 14 ASP C 37 LEU C 39 5 3 HELIX 15 15 GLY C 42 HIS C 64 1 23 HELIX 16 16 GLN C 66 VAL C 74 1 9 SSBOND 1 CYS A 4 CYS A 77 1555 1555 2.04 SSBOND 2 CYS A 7 CYS A 71 1555 1555 2.04 SSBOND 3 CYS A 36 CYS A 47 1555 1555 2.04 SSBOND 4 CYS B 4 CYS B 77 1555 1555 2.03 SSBOND 5 CYS B 7 CYS B 71 1555 1555 2.04 SSBOND 6 CYS B 36 CYS B 47 1555 1555 2.04 SSBOND 7 CYS C 4 CYS C 77 1555 1555 2.04 SSBOND 8 CYS C 7 CYS C 71 1555 1555 2.04 SSBOND 9 CYS C 36 CYS C 47 1555 1555 2.04 SITE 1 AC1 4 ARG A 38 ARG C 38 MET C 65 GLU C 69 SITE 1 AC2 7 ARG B 38 ALA B 58 HIS B 64 MET B 65 SITE 2 AC2 7 GLU B 69 LEU B 73 HOH B2047 CRYST1 75.299 75.299 94.716 90.00 90.00 120.00 P 32 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013280 0.007667 0.000000 0.00000 SCALE2 0.000000 0.015335 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010558 0.00000