HEADER OXIDOREDUCTASE 15-OCT-14 4V2V TITLE JMJD2A COMPLEXED WITH NI(II), NOG AND HISTONE H3K27ME3 PEPTIDE (25-29) TITLE 2 ARK(ME3)SA COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE-SPECIFIC DEMETHYLASE 4A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 1-359; COMPND 5 SYNONYM: 1.14.11.-, JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION COMPND 6 PROTEIN 3A, JUMONJI DOMAIN-CONTAINING PROTEIN 2A; COMPND 7 EC: 1.14.11.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: HISTONE H3.1T; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: HISTONE H3K27ME3 PEPTIDE, RESIDUES 25-29; COMPND 13 SYNONYM: H3/T, H3T, H3/G; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS OXIDOREDUCTASE, NON-HEME, IRON, 2-OXOGLUTARATE, DIOXYGENASE, KEYWDS 2 OXYGENASE, DOUBLE-STRANDED BETA HELIX, DSBH, FACIAL TRIAD, JMJC KEYWDS 3 DOMAIN, METAL BINDING PROTEIN, EPIGENETIC AND TRANSCRIPTION KEYWDS 4 REGULATION, CHROMATIN REGULATOR, HYDROXYLATION EXPDTA X-RAY DIFFRACTION AUTHOR R.CHOWDHURY,S.K.MADDEN,C.J.SCHOFIELD REVDAT 5 10-JAN-24 4V2V 1 REMARK LINK REVDAT 4 06-MAR-19 4V2V 1 REMARK LINK REVDAT 3 30-JAN-19 4V2V 1 REMARK REVDAT 2 11-FEB-15 4V2V 1 JRNL REVDAT 1 05-NOV-14 4V2V 0 JRNL AUTH S.T.WILLIAMS,L.J.WALPORT,R.J.HOPKINSON,S.K.MADDEN, JRNL AUTH 2 R.CHOWDHURY,C.J.SCHOFIELD,A.KAWAMURA JRNL TITL STUDIES ON THE CATALYTIC DOMAINS OF MULTIPLE JMJC OXYGENASES JRNL TITL 2 USING PEPTIDE SUBSTRATES. JRNL REF EPIGENETICS V. 9 1596 2014 JRNL REFN ISSN 1559-2294 JRNL PMID 25625844 JRNL DOI 10.4161/15592294.2014.983381 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 59736 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 53.6078 - 5.6021 1.00 2814 129 0.1762 0.1884 REMARK 3 2 5.6021 - 4.4472 1.00 2645 149 0.1330 0.1653 REMARK 3 3 4.4472 - 3.8852 1.00 2634 138 0.1479 0.1596 REMARK 3 4 3.8852 - 3.5301 1.00 2624 137 0.1665 0.1913 REMARK 3 5 3.5301 - 3.2771 1.00 2576 147 0.1692 0.2361 REMARK 3 6 3.2771 - 3.0839 1.00 2576 139 0.1840 0.2306 REMARK 3 7 3.0839 - 2.9295 1.00 2608 125 0.1908 0.2523 REMARK 3 8 2.9295 - 2.8020 1.00 2582 125 0.2053 0.2196 REMARK 3 9 2.8020 - 2.6941 1.00 2562 142 0.1993 0.2506 REMARK 3 10 2.6941 - 2.6011 1.00 2554 130 0.2124 0.3115 REMARK 3 11 2.6011 - 2.5198 1.00 2537 151 0.2125 0.2525 REMARK 3 12 2.5198 - 2.4478 1.00 2595 135 0.2074 0.2545 REMARK 3 13 2.4478 - 2.3833 1.00 2478 172 0.2130 0.2695 REMARK 3 14 2.3833 - 2.3252 1.00 2590 115 0.2207 0.2692 REMARK 3 15 2.3252 - 2.2723 1.00 2549 135 0.2283 0.2396 REMARK 3 16 2.2723 - 2.2240 1.00 2550 142 0.2275 0.2556 REMARK 3 17 2.2240 - 2.1795 1.00 2548 136 0.2427 0.3042 REMARK 3 18 2.1795 - 2.1384 1.00 2540 128 0.2455 0.2725 REMARK 3 19 2.1384 - 2.1002 1.00 2543 120 0.2558 0.2764 REMARK 3 20 2.1002 - 2.0646 1.00 2549 125 0.2641 0.2874 REMARK 3 21 2.0646 - 2.0313 1.00 2530 145 0.2929 0.3064 REMARK 3 22 2.0313 - 2.0000 1.00 2534 153 0.2935 0.3411 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6109 REMARK 3 ANGLE : 1.180 8325 REMARK 3 CHIRALITY : 0.052 854 REMARK 3 PLANARITY : 0.007 1087 REMARK 3 DIHEDRAL : 14.978 2226 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7053 -46.0984 -28.8909 REMARK 3 T TENSOR REMARK 3 T11: 0.5057 T22: 0.4598 REMARK 3 T33: 0.5574 T12: 0.0550 REMARK 3 T13: 0.2165 T23: 0.1650 REMARK 3 L TENSOR REMARK 3 L11: 2.0665 L22: 3.6631 REMARK 3 L33: 2.4082 L12: -1.3534 REMARK 3 L13: -1.0674 L23: -0.0538 REMARK 3 S TENSOR REMARK 3 S11: 0.4593 S12: 0.3940 S13: 0.5156 REMARK 3 S21: -0.6479 S22: -0.3217 S23: -1.2211 REMARK 3 S31: -0.4957 S32: 0.3289 S33: -0.0604 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.0034 -53.2481 -30.4880 REMARK 3 T TENSOR REMARK 3 T11: 0.5714 T22: 0.6482 REMARK 3 T33: 0.3003 T12: 0.2281 REMARK 3 T13: -0.1828 T23: -0.2448 REMARK 3 L TENSOR REMARK 3 L11: 1.3037 L22: 1.4569 REMARK 3 L33: 0.7129 L12: 0.1985 REMARK 3 L13: 0.6625 L23: -0.2307 REMARK 3 S TENSOR REMARK 3 S11: 0.4701 S12: 0.9014 S13: -0.3174 REMARK 3 S21: -0.9909 S22: -0.7630 S23: 0.4674 REMARK 3 S31: -0.3510 S32: -0.7491 S33: 0.2721 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.2016 -54.1036 -28.6332 REMARK 3 T TENSOR REMARK 3 T11: 0.3937 T22: 0.6276 REMARK 3 T33: 0.3134 T12: 0.2174 REMARK 3 T13: -0.2462 T23: -0.2278 REMARK 3 L TENSOR REMARK 3 L11: 1.9558 L22: 1.3372 REMARK 3 L33: 1.2262 L12: 0.1202 REMARK 3 L13: -0.4917 L23: -0.0277 REMARK 3 S TENSOR REMARK 3 S11: 0.3560 S12: 0.9510 S13: -0.3105 REMARK 3 S21: -0.7684 S22: -0.6389 S23: 0.5400 REMARK 3 S31: -0.1985 S32: -0.5536 S33: 0.0519 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 322 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7287 -52.3402 -17.9928 REMARK 3 T TENSOR REMARK 3 T11: 0.1989 T22: 0.2737 REMARK 3 T33: 0.2178 T12: 0.0105 REMARK 3 T13: -0.0370 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 2.5612 L22: 2.9868 REMARK 3 L33: 1.3156 L12: -1.3742 REMARK 3 L13: -0.7615 L23: 1.0331 REMARK 3 S TENSOR REMARK 3 S11: 0.1905 S12: 0.1776 S13: -0.1141 REMARK 3 S21: -0.1627 S22: -0.3196 S23: -0.0301 REMARK 3 S31: -0.0647 S32: -0.1307 S33: 0.0823 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 323 THROUGH 355 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1223 -58.1617 -13.8483 REMARK 3 T TENSOR REMARK 3 T11: 0.3904 T22: 0.5296 REMARK 3 T33: 0.6248 T12: 0.0158 REMARK 3 T13: 0.0132 T23: 0.0665 REMARK 3 L TENSOR REMARK 3 L11: 2.0246 L22: 3.1736 REMARK 3 L33: 0.9628 L12: -1.1134 REMARK 3 L13: 0.8771 L23: 0.5511 REMARK 3 S TENSOR REMARK 3 S11: 0.0643 S12: 0.1588 S13: 0.4683 REMARK 3 S21: 0.0896 S22: -0.0735 S23: -0.7401 REMARK 3 S31: -0.4594 S32: 0.7074 S33: -0.0679 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 7 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.9313 -21.6839 -8.3771 REMARK 3 T TENSOR REMARK 3 T11: 0.5902 T22: 0.3293 REMARK 3 T33: 0.4151 T12: 0.0330 REMARK 3 T13: -0.1308 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 3.9940 L22: 1.1196 REMARK 3 L33: 1.7351 L12: -1.4996 REMARK 3 L13: -0.1052 L23: 0.9582 REMARK 3 S TENSOR REMARK 3 S11: 0.0849 S12: 0.1490 S13: -0.2975 REMARK 3 S21: -0.8017 S22: -0.1181 S23: 0.7120 REMARK 3 S31: -0.3414 S32: -0.4789 S33: 0.0460 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 37 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1253 -18.2782 -5.9742 REMARK 3 T TENSOR REMARK 3 T11: 0.6776 T22: 0.3404 REMARK 3 T33: 0.2534 T12: -0.1913 REMARK 3 T13: 0.1895 T23: -0.0487 REMARK 3 L TENSOR REMARK 3 L11: 2.1246 L22: 1.5878 REMARK 3 L33: 1.5801 L12: 0.0874 REMARK 3 L13: 0.6820 L23: 0.7714 REMARK 3 S TENSOR REMARK 3 S11: 0.0194 S12: 0.3692 S13: -0.0780 REMARK 3 S21: -0.8743 S22: 0.2034 S23: -0.2268 REMARK 3 S31: -0.5665 S32: 0.4109 S33: -0.0734 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 79 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7313 -26.0979 -0.5421 REMARK 3 T TENSOR REMARK 3 T11: 0.4457 T22: 0.5442 REMARK 3 T33: 0.5427 T12: -0.2174 REMARK 3 T13: 0.3119 T23: -0.2158 REMARK 3 L TENSOR REMARK 3 L11: 1.7187 L22: 1.0048 REMARK 3 L33: 0.7449 L12: 0.1106 REMARK 3 L13: 0.3041 L23: -0.2559 REMARK 3 S TENSOR REMARK 3 S11: 0.0759 S12: 0.1811 S13: 0.0213 REMARK 3 S21: -0.5029 S22: 0.4340 S23: -0.7975 REMARK 3 S31: -0.2991 S32: 0.7902 S33: 0.0178 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 125 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.4114 -20.3744 3.4485 REMARK 3 T TENSOR REMARK 3 T11: 0.3452 T22: 0.2083 REMARK 3 T33: 0.2361 T12: -0.1148 REMARK 3 T13: 0.1050 T23: -0.0371 REMARK 3 L TENSOR REMARK 3 L11: 1.8587 L22: 2.4013 REMARK 3 L33: 2.3247 L12: -0.1733 REMARK 3 L13: -0.0123 L23: 0.7690 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: -0.1056 S13: 0.0452 REMARK 3 S21: -0.4014 S22: 0.2013 S23: -0.0846 REMARK 3 S31: -0.4507 S32: 0.2407 S33: -0.1386 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 294 THROUGH 354 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.8254 -13.0343 12.5888 REMARK 3 T TENSOR REMARK 3 T11: 0.3461 T22: 0.3321 REMARK 3 T33: 0.4285 T12: -0.0108 REMARK 3 T13: -0.0134 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 2.4727 L22: 2.2646 REMARK 3 L33: 1.0286 L12: -1.8465 REMARK 3 L13: -1.2193 L23: 0.1048 REMARK 3 S TENSOR REMARK 3 S11: -0.0442 S12: -0.0125 S13: -0.0341 REMARK 3 S21: -0.2465 S22: 0.0248 S23: 0.3831 REMARK 3 S31: -0.0570 S32: -0.1102 S33: 0.0088 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 25 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.5873 -63.1576 -18.8868 REMARK 3 T TENSOR REMARK 3 T11: 0.5563 T22: 0.6582 REMARK 3 T33: 0.8566 T12: 0.1003 REMARK 3 T13: -0.0844 T23: -0.0820 REMARK 3 L TENSOR REMARK 3 L11: 1.2807 L22: 0.6465 REMARK 3 L33: 2.2004 L12: 0.8523 REMARK 3 L13: -0.7122 L23: -0.8709 REMARK 3 S TENSOR REMARK 3 S11: -0.1269 S12: -0.6816 S13: -0.2181 REMARK 3 S21: 0.2058 S22: 0.0031 S23: 0.3968 REMARK 3 S31: 0.0520 S32: -0.2945 S33: 0.0043 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 25 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0297 -11.0061 8.2651 REMARK 3 T TENSOR REMARK 3 T11: 0.7740 T22: 0.8348 REMARK 3 T33: 0.6728 T12: -0.1965 REMARK 3 T13: 0.0878 T23: -0.1071 REMARK 3 L TENSOR REMARK 3 L11: 2.0550 L22: 1.4908 REMARK 3 L33: 2.1441 L12: 1.3952 REMARK 3 L13: 1.3418 L23: 0.0779 REMARK 3 S TENSOR REMARK 3 S11: -0.0937 S12: -0.2343 S13: -0.0619 REMARK 3 S21: 0.1670 S22: -0.1004 S23: -0.1568 REMARK 3 S31: -0.1633 S32: -0.0051 S33: 0.0092 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4V2V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1290061987. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97500 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59803 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 53.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.79000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2OX0 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOUR DIFFUSION, SITTING DROP (1:1), REMARK 280 277 K, JCSG/A9: 0.2 M AMMONIUM CHLORIDE, 20 % W/V PEG 3350, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 50.51000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 74.95500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.51000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 74.95500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NH2 ARG A 322 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 356 REMARK 465 SER A 357 REMARK 465 GLU A 358 REMARK 465 LEU A 359 REMARK 465 MET B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 GLY B -12 REMARK 465 VAL B -11 REMARK 465 ASP B -10 REMARK 465 LEU B -9 REMARK 465 GLY B -8 REMARK 465 THR B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 GLU B 4 REMARK 465 SER B 5 REMARK 465 GLU B 6 REMARK 465 LYS B 355 REMARK 465 GLU B 356 REMARK 465 SER B 357 REMARK 465 GLU B 358 REMARK 465 LEU B 359 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 3 OG REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 ARG A 25 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 29 NE CZ NH1 NH2 REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 ILE A 62 CG1 CG2 CD1 REMARK 470 LEU A 65 CG CD1 CD2 REMARK 470 LYS A 89 CE NZ REMARK 470 LYS A 99 CD CE NZ REMARK 470 ASP A 104 CG OD1 OD2 REMARK 470 ARG A 110 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 113 CG CD OE1 OE2 REMARK 470 GLU A 115 CD OE1 OE2 REMARK 470 LYS A 123 NZ REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 GLN A 232 CG CD OE1 NE2 REMARK 470 GLU A 235 CG CD OE1 OE2 REMARK 470 LYS A 330 CD CE NZ REMARK 470 LYS A 336 CE NZ REMARK 470 LEU A 354 CG CD1 CD2 REMARK 470 LYS A 355 CG CD CE NZ REMARK 470 THR B 7 OG1 CG2 REMARK 470 LEU B 8 CG CD1 CD2 REMARK 470 ARG B 13 NE CZ NH1 NH2 REMARK 470 LYS B 51 CG CD CE NZ REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 ILE B 87 CD1 REMARK 470 LYS B 90 CG CD CE NZ REMARK 470 LYS B 99 CE NZ REMARK 470 ARG B 110 CG CD NE CZ NH1 NH2 REMARK 470 SER B 112 OG REMARK 470 GLU B 115 CD OE1 OE2 REMARK 470 LYS B 120 CE NZ REMARK 470 LYS B 123 CE NZ REMARK 470 LYS B 143 CG CD CE NZ REMARK 470 ARG B 154 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 161 CD OE1 OE2 REMARK 470 LYS B 162 CG CD CE NZ REMARK 470 GLU B 163 OE1 OE2 REMARK 470 GLN B 232 CD OE1 NE2 REMARK 470 LYS B 310 CG CD CE NZ REMARK 470 ASP B 311 CG OD1 OD2 REMARK 470 LYS B 333 CE NZ REMARK 470 LYS B 336 NZ REMARK 470 ASN B 338 CG OD1 ND2 REMARK 470 SER C 28 OG REMARK 470 ARG D 26 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 112 -76.05 -108.45 REMARK 500 VAL A 171 -65.50 -98.86 REMARK 500 LYS A 182 -1.27 77.15 REMARK 500 SER B 112 -61.82 -94.55 REMARK 500 VAL B 171 -62.59 -99.40 REMARK 500 LYS B 182 -3.77 78.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1357 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 188 NE2 REMARK 620 2 GLU A 190 OE2 106.0 REMARK 620 3 HIS A 276 NE2 89.8 86.2 REMARK 620 4 OGA A1356 O2' 88.2 162.0 105.3 REMARK 620 5 OGA A1356 O1 162.7 91.0 94.8 74.5 REMARK 620 6 HOH A2127 O 82.1 84.9 165.8 86.1 96.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1358 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 234 SG REMARK 620 2 HIS A 240 NE2 107.9 REMARK 620 3 CYS A 306 SG 113.9 120.1 REMARK 620 4 CYS A 308 SG 113.9 87.8 110.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B1356 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 188 NE2 REMARK 620 2 GLU B 190 OE2 110.0 REMARK 620 3 HIS B 276 NE2 90.5 84.9 REMARK 620 4 OGA B1355 O2' 89.1 159.3 103.4 REMARK 620 5 OGA B1355 O1 163.6 86.4 91.5 74.6 REMARK 620 6 HOH B2122 O 79.9 92.6 168.6 82.8 99.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1357 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 234 SG REMARK 620 2 HIS B 240 NE2 111.4 REMARK 620 3 CYS B 306 SG 114.5 115.0 REMARK 620 4 CYS B 308 SG 116.1 87.6 109.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OGA A 1356 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1357 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1358 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1359 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OGA B 1355 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 1356 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1357 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4V2W RELATED DB: PDB REMARK 900 JMJD2A COMPLEXED WITH NI(II), NOG AND HISTONE H3K27ME3 PEPTIDE (16- REMARK 900 35) DBREF 4V2V A 1 359 UNP O75164 KDM4A_HUMAN 1 359 DBREF 4V2V B 1 359 UNP O75164 KDM4A_HUMAN 1 359 DBREF 4V2V C 25 29 UNP Q16695 H31T_HUMAN 26 30 DBREF 4V2V D 25 29 UNP Q16695 H31T_HUMAN 26 30 SEQADV 4V2V MET A -21 UNP O75164 EXPRESSION TAG SEQADV 4V2V HIS A -20 UNP O75164 EXPRESSION TAG SEQADV 4V2V HIS A -19 UNP O75164 EXPRESSION TAG SEQADV 4V2V HIS A -18 UNP O75164 EXPRESSION TAG SEQADV 4V2V HIS A -17 UNP O75164 EXPRESSION TAG SEQADV 4V2V HIS A -16 UNP O75164 EXPRESSION TAG SEQADV 4V2V HIS A -15 UNP O75164 EXPRESSION TAG SEQADV 4V2V SER A -14 UNP O75164 EXPRESSION TAG SEQADV 4V2V SER A -13 UNP O75164 EXPRESSION TAG SEQADV 4V2V GLY A -12 UNP O75164 EXPRESSION TAG SEQADV 4V2V VAL A -11 UNP O75164 EXPRESSION TAG SEQADV 4V2V ASP A -10 UNP O75164 EXPRESSION TAG SEQADV 4V2V LEU A -9 UNP O75164 EXPRESSION TAG SEQADV 4V2V GLY A -8 UNP O75164 EXPRESSION TAG SEQADV 4V2V THR A -7 UNP O75164 EXPRESSION TAG SEQADV 4V2V GLU A -6 UNP O75164 EXPRESSION TAG SEQADV 4V2V ASN A -5 UNP O75164 EXPRESSION TAG SEQADV 4V2V LEU A -4 UNP O75164 EXPRESSION TAG SEQADV 4V2V TYR A -3 UNP O75164 EXPRESSION TAG SEQADV 4V2V PHE A -2 UNP O75164 EXPRESSION TAG SEQADV 4V2V GLN A -1 UNP O75164 EXPRESSION TAG SEQADV 4V2V SER A 0 UNP O75164 EXPRESSION TAG SEQADV 4V2V MET B -21 UNP O75164 EXPRESSION TAG SEQADV 4V2V HIS B -20 UNP O75164 EXPRESSION TAG SEQADV 4V2V HIS B -19 UNP O75164 EXPRESSION TAG SEQADV 4V2V HIS B -18 UNP O75164 EXPRESSION TAG SEQADV 4V2V HIS B -17 UNP O75164 EXPRESSION TAG SEQADV 4V2V HIS B -16 UNP O75164 EXPRESSION TAG SEQADV 4V2V HIS B -15 UNP O75164 EXPRESSION TAG SEQADV 4V2V SER B -14 UNP O75164 EXPRESSION TAG SEQADV 4V2V SER B -13 UNP O75164 EXPRESSION TAG SEQADV 4V2V GLY B -12 UNP O75164 EXPRESSION TAG SEQADV 4V2V VAL B -11 UNP O75164 EXPRESSION TAG SEQADV 4V2V ASP B -10 UNP O75164 EXPRESSION TAG SEQADV 4V2V LEU B -9 UNP O75164 EXPRESSION TAG SEQADV 4V2V GLY B -8 UNP O75164 EXPRESSION TAG SEQADV 4V2V THR B -7 UNP O75164 EXPRESSION TAG SEQADV 4V2V GLU B -6 UNP O75164 EXPRESSION TAG SEQADV 4V2V ASN B -5 UNP O75164 EXPRESSION TAG SEQADV 4V2V LEU B -4 UNP O75164 EXPRESSION TAG SEQADV 4V2V TYR B -3 UNP O75164 EXPRESSION TAG SEQADV 4V2V PHE B -2 UNP O75164 EXPRESSION TAG SEQADV 4V2V GLN B -1 UNP O75164 EXPRESSION TAG SEQADV 4V2V SER B 0 UNP O75164 EXPRESSION TAG SEQRES 1 A 381 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 381 GLY THR GLU ASN LEU TYR PHE GLN SER MET ALA SER GLU SEQRES 3 A 381 SER GLU THR LEU ASN PRO SER ALA ARG ILE MET THR PHE SEQRES 4 A 381 TYR PRO THR MET GLU GLU PHE ARG ASN PHE SER ARG TYR SEQRES 5 A 381 ILE ALA TYR ILE GLU SER GLN GLY ALA HIS ARG ALA GLY SEQRES 6 A 381 LEU ALA LYS VAL VAL PRO PRO LYS GLU TRP LYS PRO ARG SEQRES 7 A 381 ALA SER TYR ASP ASP ILE ASP ASP LEU VAL ILE PRO ALA SEQRES 8 A 381 PRO ILE GLN GLN LEU VAL THR GLY GLN SER GLY LEU PHE SEQRES 9 A 381 THR GLN TYR ASN ILE GLN LYS LYS ALA MET THR VAL ARG SEQRES 10 A 381 GLU PHE ARG LYS ILE ALA ASN SER ASP LYS TYR CYS THR SEQRES 11 A 381 PRO ARG TYR SER GLU PHE GLU GLU LEU GLU ARG LYS TYR SEQRES 12 A 381 TRP LYS ASN LEU THR PHE ASN PRO PRO ILE TYR GLY ALA SEQRES 13 A 381 ASP VAL ASN GLY THR LEU TYR GLU LYS HIS VAL ASP GLU SEQRES 14 A 381 TRP ASN ILE GLY ARG LEU ARG THR ILE LEU ASP LEU VAL SEQRES 15 A 381 GLU LYS GLU SER GLY ILE THR ILE GLU GLY VAL ASN THR SEQRES 16 A 381 PRO TYR LEU TYR PHE GLY MET TRP LYS THR SER PHE ALA SEQRES 17 A 381 TRP HIS THR GLU ASP MET ASP LEU TYR SER ILE ASN TYR SEQRES 18 A 381 LEU HIS PHE GLY GLU PRO LYS SER TRP TYR SER VAL PRO SEQRES 19 A 381 PRO GLU HIS GLY LYS ARG LEU GLU ARG LEU ALA LYS GLY SEQRES 20 A 381 PHE PHE PRO GLY SER ALA GLN SER CYS GLU ALA PHE LEU SEQRES 21 A 381 ARG HIS LYS MET THR LEU ILE SER PRO LEU MET LEU LYS SEQRES 22 A 381 LYS TYR GLY ILE PRO PHE ASP LYS VAL THR GLN GLU ALA SEQRES 23 A 381 GLY GLU PHE MET ILE THR PHE PRO TYR GLY TYR HIS ALA SEQRES 24 A 381 GLY PHE ASN HIS GLY PHE ASN CYS ALA GLU SER THR ASN SEQRES 25 A 381 PHE ALA THR ARG ARG TRP ILE GLU TYR GLY LYS GLN ALA SEQRES 26 A 381 VAL LEU CYS SER CYS ARG LYS ASP MET VAL LYS ILE SER SEQRES 27 A 381 MET ASP VAL PHE VAL ARG LYS PHE GLN PRO GLU ARG TYR SEQRES 28 A 381 LYS LEU TRP LYS ALA GLY LYS ASP ASN THR VAL ILE ASP SEQRES 29 A 381 HIS THR LEU PRO THR PRO GLU ALA ALA GLU PHE LEU LYS SEQRES 30 A 381 GLU SER GLU LEU SEQRES 1 B 381 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 381 GLY THR GLU ASN LEU TYR PHE GLN SER MET ALA SER GLU SEQRES 3 B 381 SER GLU THR LEU ASN PRO SER ALA ARG ILE MET THR PHE SEQRES 4 B 381 TYR PRO THR MET GLU GLU PHE ARG ASN PHE SER ARG TYR SEQRES 5 B 381 ILE ALA TYR ILE GLU SER GLN GLY ALA HIS ARG ALA GLY SEQRES 6 B 381 LEU ALA LYS VAL VAL PRO PRO LYS GLU TRP LYS PRO ARG SEQRES 7 B 381 ALA SER TYR ASP ASP ILE ASP ASP LEU VAL ILE PRO ALA SEQRES 8 B 381 PRO ILE GLN GLN LEU VAL THR GLY GLN SER GLY LEU PHE SEQRES 9 B 381 THR GLN TYR ASN ILE GLN LYS LYS ALA MET THR VAL ARG SEQRES 10 B 381 GLU PHE ARG LYS ILE ALA ASN SER ASP LYS TYR CYS THR SEQRES 11 B 381 PRO ARG TYR SER GLU PHE GLU GLU LEU GLU ARG LYS TYR SEQRES 12 B 381 TRP LYS ASN LEU THR PHE ASN PRO PRO ILE TYR GLY ALA SEQRES 13 B 381 ASP VAL ASN GLY THR LEU TYR GLU LYS HIS VAL ASP GLU SEQRES 14 B 381 TRP ASN ILE GLY ARG LEU ARG THR ILE LEU ASP LEU VAL SEQRES 15 B 381 GLU LYS GLU SER GLY ILE THR ILE GLU GLY VAL ASN THR SEQRES 16 B 381 PRO TYR LEU TYR PHE GLY MET TRP LYS THR SER PHE ALA SEQRES 17 B 381 TRP HIS THR GLU ASP MET ASP LEU TYR SER ILE ASN TYR SEQRES 18 B 381 LEU HIS PHE GLY GLU PRO LYS SER TRP TYR SER VAL PRO SEQRES 19 B 381 PRO GLU HIS GLY LYS ARG LEU GLU ARG LEU ALA LYS GLY SEQRES 20 B 381 PHE PHE PRO GLY SER ALA GLN SER CYS GLU ALA PHE LEU SEQRES 21 B 381 ARG HIS LYS MET THR LEU ILE SER PRO LEU MET LEU LYS SEQRES 22 B 381 LYS TYR GLY ILE PRO PHE ASP LYS VAL THR GLN GLU ALA SEQRES 23 B 381 GLY GLU PHE MET ILE THR PHE PRO TYR GLY TYR HIS ALA SEQRES 24 B 381 GLY PHE ASN HIS GLY PHE ASN CYS ALA GLU SER THR ASN SEQRES 25 B 381 PHE ALA THR ARG ARG TRP ILE GLU TYR GLY LYS GLN ALA SEQRES 26 B 381 VAL LEU CYS SER CYS ARG LYS ASP MET VAL LYS ILE SER SEQRES 27 B 381 MET ASP VAL PHE VAL ARG LYS PHE GLN PRO GLU ARG TYR SEQRES 28 B 381 LYS LEU TRP LYS ALA GLY LYS ASP ASN THR VAL ILE ASP SEQRES 29 B 381 HIS THR LEU PRO THR PRO GLU ALA ALA GLU PHE LEU LYS SEQRES 30 B 381 GLU SER GLU LEU SEQRES 1 C 5 ALA ARG M3L SER ALA SEQRES 1 D 5 ALA ARG M3L SER ALA MODRES 4V2V M3L C 27 LYS N-TRIMETHYLLYSINE MODRES 4V2V M3L D 27 LYS N-TRIMETHYLLYSINE HET M3L C 27 12 HET M3L D 27 12 HET OGA A1356 10 HET NI A1357 1 HET ZN A1358 1 HET CL A1359 1 HET OGA B1355 10 HET NI B1356 1 HET ZN B1357 1 HETNAM M3L N-TRIMETHYLLYSINE HETNAM OGA N-OXALYLGLYCINE HETNAM NI NICKEL (II) ION HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 3 M3L 2(C9 H21 N2 O2 1+) FORMUL 5 OGA 2(C4 H5 N O5) FORMUL 6 NI 2(NI 2+) FORMUL 7 ZN 2(ZN 2+) FORMUL 8 CL CL 1- FORMUL 12 HOH *469(H2 O) HELIX 1 1 SER A 3 LEU A 8 1 6 HELIX 2 2 THR A 20 ARG A 25 1 6 HELIX 3 3 ASN A 26 GLN A 37 1 12 HELIX 4 4 GLY A 38 ALA A 42 5 5 HELIX 5 5 TYR A 59 ASP A 63 5 5 HELIX 6 6 VAL A 94 SER A 103 1 10 HELIX 7 7 GLU A 113 LEU A 125 1 13 HELIX 8 8 THR A 155 LEU A 157 5 3 HELIX 9 9 ASP A 158 GLY A 165 1 8 HELIX 10 10 GLU A 190 LEU A 194 5 5 HELIX 11 11 PRO A 212 GLU A 214 5 3 HELIX 12 12 HIS A 215 PHE A 227 1 13 HELIX 13 13 PHE A 227 CYS A 234 1 8 HELIX 14 14 ALA A 236 LYS A 241 5 6 HELIX 15 15 SER A 246 TYR A 253 1 8 HELIX 16 16 ARG A 295 ALA A 303 1 9 HELIX 17 17 MET A 317 GLN A 325 1 9 HELIX 18 18 ARG A 328 GLY A 335 1 8 HELIX 19 19 THR A 347 GLU A 349 5 3 HELIX 20 20 ALA A 350 LYS A 355 1 6 HELIX 21 21 THR B 20 ASN B 26 1 7 HELIX 22 22 ASN B 26 GLN B 37 1 12 HELIX 23 23 GLY B 38 ALA B 42 5 5 HELIX 24 24 VAL B 94 SER B 103 1 10 HELIX 25 25 GLU B 113 LEU B 125 1 13 HELIX 26 26 THR B 155 LEU B 157 5 3 HELIX 27 27 ASP B 158 GLU B 163 1 6 HELIX 28 28 GLU B 190 LEU B 194 5 5 HELIX 29 29 PRO B 212 GLU B 214 5 3 HELIX 30 30 HIS B 215 PHE B 227 1 13 HELIX 31 31 PHE B 227 CYS B 234 1 8 HELIX 32 32 ALA B 236 LYS B 241 5 6 HELIX 33 33 SER B 246 TYR B 253 1 8 HELIX 34 34 ARG B 295 ALA B 303 1 9 HELIX 35 35 MET B 317 GLN B 325 1 9 HELIX 36 36 GLN B 325 ALA B 334 1 10 HELIX 37 37 THR B 347 ALA B 351 5 5 SHEET 1 AA10 MET A 15 PHE A 17 0 SHEET 2 AA10 LEU A 44 VAL A 47 1 O LEU A 44 N MET A 15 SHEET 3 AA10 PHE A 267 THR A 270 -1 O PHE A 267 N VAL A 47 SHEET 4 AA10 TYR A 195 GLY A 203 -1 O SER A 196 N THR A 270 SHEET 5 AA10 ASN A 284 PHE A 291 -1 O CYS A 285 N HIS A 201 SHEET 6 AA10 TYR A 175 GLY A 179 -1 O TYR A 175 N SER A 288 SHEET 7 AA10 ILE A 131 ASN A 137 -1 O GLY A 133 N PHE A 178 SHEET 8 AA10 ILE A 71 GLN A 78 -1 O ILE A 71 N TYR A 132 SHEET 9 AA10 LEU A 81 GLN A 88 -1 O LEU A 81 N GLN A 78 SHEET 10 AA10 THR A 243 ILE A 245 -1 O LEU A 244 N PHE A 82 SHEET 1 AB 2 VAL A 66 ILE A 67 0 SHEET 2 AB 2 MET A 92 THR A 93 -1 O MET A 92 N ILE A 67 SHEET 1 AC 4 SER A 184 HIS A 188 0 SHEET 2 AC 4 TYR A 275 ASN A 280 -1 O HIS A 276 N HIS A 188 SHEET 3 AC 4 LYS A 206 VAL A 211 -1 O SER A 207 N PHE A 279 SHEET 4 AC 4 ASP A 258 GLN A 262 -1 O ASP A 258 N SER A 210 SHEET 1 BA10 MET B 15 PHE B 17 0 SHEET 2 BA10 LEU B 44 VAL B 47 1 O LEU B 44 N MET B 15 SHEET 3 BA10 PHE B 267 THR B 270 -1 O PHE B 267 N VAL B 47 SHEET 4 BA10 TYR B 195 GLY B 203 -1 O SER B 196 N THR B 270 SHEET 5 BA10 ASN B 284 PHE B 291 -1 O CYS B 285 N HIS B 201 SHEET 6 BA10 TYR B 175 GLY B 179 -1 O TYR B 175 N SER B 288 SHEET 7 BA10 ILE B 131 ASN B 137 -1 O GLY B 133 N PHE B 178 SHEET 8 BA10 ILE B 71 GLN B 78 -1 O ILE B 71 N TYR B 132 SHEET 9 BA10 LEU B 81 GLN B 88 -1 O LEU B 81 N GLN B 78 SHEET 10 BA10 THR B 243 ILE B 245 -1 O LEU B 244 N PHE B 82 SHEET 1 BB 2 VAL B 66 ILE B 67 0 SHEET 2 BB 2 MET B 92 THR B 93 -1 O MET B 92 N ILE B 67 SHEET 1 BC 4 SER B 184 HIS B 188 0 SHEET 2 BC 4 TYR B 275 ASN B 280 -1 O HIS B 276 N HIS B 188 SHEET 3 BC 4 LYS B 206 VAL B 211 -1 O SER B 207 N PHE B 279 SHEET 4 BC 4 ASP B 258 GLN B 262 -1 O ASP B 258 N SER B 210 LINK C BARG C 26 N M3L C 27 1555 1555 1.33 LINK C AARG C 26 N M3L C 27 1555 1555 1.33 LINK C M3L C 27 N SER C 28 1555 1555 1.33 LINK C ARG D 26 N M3L D 27 1555 1555 1.33 LINK C M3L D 27 N SER D 28 1555 1555 1.34 LINK NE2 HIS A 188 NI NI A1357 1555 1555 2.26 LINK OE2 GLU A 190 NI NI A1357 1555 1555 2.13 LINK SG CYS A 234 ZN ZN A1358 1555 1555 2.32 LINK NE2 HIS A 240 ZN ZN A1358 1555 1555 2.40 LINK NE2 HIS A 276 NI NI A1357 1555 1555 2.11 LINK SG CYS A 306 ZN ZN A1358 1555 1555 2.29 LINK SG CYS A 308 ZN ZN A1358 1555 1555 2.38 LINK O2' OGA A1356 NI NI A1357 1555 1555 2.25 LINK O1 OGA A1356 NI NI A1357 1555 1555 2.31 LINK NI NI A1357 O HOH A2127 1555 1555 2.15 LINK NE2 HIS B 188 NI NI B1356 1555 1555 2.23 LINK OE2 GLU B 190 NI NI B1356 1555 1555 2.18 LINK SG CYS B 234 ZN ZN B1357 1555 1555 2.32 LINK NE2 HIS B 240 ZN ZN B1357 1555 1555 2.21 LINK NE2 HIS B 276 NI NI B1356 1555 1555 2.23 LINK SG CYS B 306 ZN ZN B1357 1555 1555 2.19 LINK SG CYS B 308 ZN ZN B1357 1555 1555 2.36 LINK O2' OGA B1355 NI NI B1356 1555 1555 2.22 LINK O1 OGA B1355 NI NI B1356 1555 1555 2.34 LINK NI NI B1356 O HOH B2122 1555 1555 2.51 SITE 1 AC1 12 TYR A 132 PHE A 185 HIS A 188 GLU A 190 SITE 2 AC1 12 SER A 196 ASN A 198 LYS A 206 HIS A 276 SITE 3 AC1 12 SER A 288 NI A1357 HOH A2127 M3L C 27 SITE 1 AC2 5 HIS A 188 GLU A 190 HIS A 276 OGA A1356 SITE 2 AC2 5 HOH A2127 SITE 1 AC3 4 CYS A 234 HIS A 240 CYS A 306 CYS A 308 SITE 1 AC4 5 PHE A 227 PRO A 228 GLY A 229 SER A 230 SITE 2 AC4 5 LYS B 105 SITE 1 AC5 12 TYR B 132 PHE B 185 HIS B 188 GLU B 190 SITE 2 AC5 12 SER B 196 ASN B 198 LYS B 206 TRP B 208 SITE 3 AC5 12 HIS B 276 SER B 288 NI B1356 HOH B2223 SITE 1 AC6 5 HIS B 188 GLU B 190 HIS B 276 OGA B1355 SITE 2 AC6 5 HOH B2122 SITE 1 AC7 4 CYS B 234 HIS B 240 CYS B 306 CYS B 308 CRYST1 101.020 149.910 57.380 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009899 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006671 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017428 0.00000