HEADER OXIDOREDUCTASE 15-OCT-14 4V2W TITLE JMJD2A COMPLEXED WITH NI(II), NOG AND HISTONE H3K27ME3 PEPTIDE (16-35) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE-SPECIFIC DEMETHYLASE 4A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN UNP RESIDUES 1-359; COMPND 5 SYNONYM: JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 3A, COMPND 6 JUMONJI DOMAIN-CONTAINING PROTEIN 2A; COMPND 7 EC: 1.14.11.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: HISTONE H3.1T; COMPND 11 CHAIN: C; COMPND 12 FRAGMENT: HISTONE H3K27ME3 PEPTIDE, RESIDUES 17-36 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS JMJD2A, OXIDOREDUCTASE, NON-HEME, IRON, 2-OXOGLUTARATE, DIOXYGENASE, KEYWDS 2 OXYGENASE, DOUBLE-STRANDED BETA HELIX, DSBH, FACIAL TRIAD, KEYWDS 3 DEMETHYLASE, HISTONE, JMJC DOMAIN, METAL BINDING PROTEIN, EPIGENETIC KEYWDS 4 AND TRANSCRIPTION REGULATION, CHROMATIN REGULATOR, HYDROXYLATION EXPDTA X-RAY DIFFRACTION AUTHOR R.CHOWDHURY,D.ZAFRED,C.J.SCHOFIELD REVDAT 6 10-JAN-24 4V2W 1 REMARK LINK REVDAT 5 06-MAR-19 4V2W 1 REMARK LINK REVDAT 4 30-JAN-19 4V2W 1 REMARK ATOM REVDAT 3 11-FEB-15 4V2W 1 JRNL REVDAT 2 24-DEC-14 4V2W 1 HEADER REMARK HET HETNAM REVDAT 2 2 1 HETSYN FORMUL LINK SCALE1 REVDAT 2 3 1 SCALE2 SCALE3 ATOM TER REVDAT 2 4 1 HETATM CONECT REVDAT 1 26-NOV-14 4V2W 0 JRNL AUTH S.T.WILLIAMS,L.J.WALPORT,R.J.HOPKINSON,S.K.MADDEN, JRNL AUTH 2 R.CHOWDHURY,C.J.SCHOFIELD,A.KAWAMURA JRNL TITL STUDIES ON THE CATALYTIC DOMAINS OF MULTIPLE JMJC OXYGENASES JRNL TITL 2 USING PEPTIDE SUBSTRATES. JRNL REF EPIGENETICS V. 9 1596 2014 JRNL REFN ISSN 1559-2294 JRNL PMID 25625844 JRNL DOI 10.4161/15592294.2014.983381 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 79914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 60.1051 - 5.5595 1.00 2841 152 0.1535 0.1857 REMARK 3 2 5.5595 - 4.4132 1.00 2698 153 0.1205 0.1663 REMARK 3 3 4.4132 - 3.8554 1.00 2684 134 0.1293 0.1678 REMARK 3 4 3.8554 - 3.5030 1.00 2695 124 0.1493 0.1997 REMARK 3 5 3.5030 - 3.2519 1.00 2652 136 0.1591 0.1917 REMARK 3 6 3.2519 - 3.0602 1.00 2618 144 0.1718 0.1962 REMARK 3 7 3.0602 - 2.9069 1.00 2656 130 0.1769 0.2393 REMARK 3 8 2.9069 - 2.7804 1.00 2624 131 0.1890 0.2166 REMARK 3 9 2.7804 - 2.6734 1.00 2633 140 0.1787 0.2184 REMARK 3 10 2.6734 - 2.5811 1.00 2599 136 0.1971 0.2200 REMARK 3 11 2.5811 - 2.5004 1.00 2610 142 0.1915 0.2254 REMARK 3 12 2.5004 - 2.4289 1.00 2615 143 0.1856 0.2179 REMARK 3 13 2.4289 - 2.3650 1.00 2627 131 0.1867 0.2072 REMARK 3 14 2.3650 - 2.3073 1.00 2599 123 0.1904 0.2313 REMARK 3 15 2.3073 - 2.2548 1.00 2617 155 0.1966 0.2046 REMARK 3 16 2.2548 - 2.2068 1.00 2559 143 0.2011 0.2313 REMARK 3 17 2.2068 - 2.1627 1.00 2611 152 0.2125 0.2390 REMARK 3 18 2.1627 - 2.1219 1.00 2584 130 0.2099 0.2352 REMARK 3 19 2.1219 - 2.0840 1.00 2616 140 0.2197 0.2638 REMARK 3 20 2.0840 - 2.0487 1.00 2576 148 0.2316 0.2573 REMARK 3 21 2.0487 - 2.0156 1.00 2574 150 0.2319 0.2776 REMARK 3 22 2.0156 - 1.9846 1.00 2562 143 0.2289 0.2700 REMARK 3 23 1.9846 - 1.9554 1.00 2624 142 0.2386 0.2439 REMARK 3 24 1.9554 - 1.9279 1.00 2565 137 0.2503 0.3083 REMARK 3 25 1.9279 - 1.9018 1.00 2588 134 0.2639 0.2796 REMARK 3 26 1.9018 - 1.8771 1.00 2592 134 0.2738 0.3133 REMARK 3 27 1.8771 - 1.8536 1.00 2587 122 0.2795 0.2636 REMARK 3 28 1.8536 - 1.8313 0.99 2613 124 0.2959 0.3371 REMARK 3 29 1.8313 - 1.8100 0.97 2485 137 0.3077 0.3491 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6182 REMARK 3 ANGLE : 1.321 8436 REMARK 3 CHIRALITY : 0.058 863 REMARK 3 PLANARITY : 0.008 1110 REMARK 3 DIHEDRAL : 14.960 2273 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.4308 23.3652 -18.9326 REMARK 3 T TENSOR REMARK 3 T11: 0.5751 T22: 0.3431 REMARK 3 T33: 0.5257 T12: -0.0244 REMARK 3 T13: 0.1101 T23: -0.0411 REMARK 3 L TENSOR REMARK 3 L11: 5.7580 L22: 2.2119 REMARK 3 L33: 3.5360 L12: 2.9779 REMARK 3 L13: -2.5339 L23: -0.1671 REMARK 3 S TENSOR REMARK 3 S11: 0.1523 S12: -0.1876 S13: 0.3424 REMARK 3 S21: 0.3385 S22: -0.1497 S23: 1.1425 REMARK 3 S31: 0.5286 S32: -0.5391 S33: 0.0055 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8504 20.8546 -29.6755 REMARK 3 T TENSOR REMARK 3 T11: 0.3673 T22: 0.1956 REMARK 3 T33: 0.2166 T12: 0.1425 REMARK 3 T13: -0.1221 T23: -0.0404 REMARK 3 L TENSOR REMARK 3 L11: 2.6942 L22: 2.6914 REMARK 3 L33: 2.9504 L12: 0.2046 REMARK 3 L13: -0.4852 L23: 0.6028 REMARK 3 S TENSOR REMARK 3 S11: 0.0126 S12: -0.1130 S13: -0.0134 REMARK 3 S21: 0.5153 S22: 0.2031 S23: -0.0926 REMARK 3 S31: 0.5459 S32: 0.3953 S33: -0.1088 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 294 THROUGH 354 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.7323 12.8837 -41.4742 REMARK 3 T TENSOR REMARK 3 T11: 0.3438 T22: 0.3034 REMARK 3 T33: 0.4932 T12: -0.0091 REMARK 3 T13: -0.0284 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 2.7665 L22: 3.2280 REMARK 3 L33: 2.1770 L12: 2.1437 REMARK 3 L13: 1.0787 L23: 0.7518 REMARK 3 S TENSOR REMARK 3 S11: -0.0434 S12: 0.0335 S13: -0.1135 REMARK 3 S21: 0.1465 S22: -0.0147 S23: 0.2998 REMARK 3 S31: 0.1391 S32: -0.1790 S33: 0.0574 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6510 44.8373 2.1044 REMARK 3 T TENSOR REMARK 3 T11: 0.5668 T22: 0.6103 REMARK 3 T33: 0.6379 T12: -0.0903 REMARK 3 T13: -0.2835 T23: 0.1604 REMARK 3 L TENSOR REMARK 3 L11: 0.9861 L22: 3.4306 REMARK 3 L33: 3.6392 L12: 0.7225 REMARK 3 L13: -0.6612 L23: 0.8663 REMARK 3 S TENSOR REMARK 3 S11: 0.3951 S12: -0.6688 S13: -0.4140 REMARK 3 S21: 0.8447 S22: -0.0178 S23: -1.2711 REMARK 3 S31: 0.3705 S32: 0.8493 S33: -0.3612 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 27 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.7785 51.1126 -0.3054 REMARK 3 T TENSOR REMARK 3 T11: 0.3983 T22: 0.6767 REMARK 3 T33: 0.2550 T12: -0.1678 REMARK 3 T13: 0.1697 T23: -0.1612 REMARK 3 L TENSOR REMARK 3 L11: 2.3350 L22: 2.3709 REMARK 3 L33: 1.2921 L12: 0.8826 REMARK 3 L13: 0.6511 L23: 0.2614 REMARK 3 S TENSOR REMARK 3 S11: 0.4869 S12: -1.0705 S13: 0.0563 REMARK 3 S21: 0.7182 S22: -0.5884 S23: 0.3262 REMARK 3 S31: 0.2381 S32: -0.5587 S33: 0.1878 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 226 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.1831 54.6679 -6.2624 REMARK 3 T TENSOR REMARK 3 T11: 0.2183 T22: 0.3034 REMARK 3 T33: 0.1647 T12: -0.0383 REMARK 3 T13: 0.0264 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 3.0187 L22: 3.1827 REMARK 3 L33: 1.3864 L12: 1.1280 REMARK 3 L13: 0.5895 L23: 0.5896 REMARK 3 S TENSOR REMARK 3 S11: 0.2352 S12: -0.5145 S13: 0.1058 REMARK 3 S21: 0.3134 S22: -0.3718 S23: -0.0666 REMARK 3 S31: 0.0787 S32: -0.2827 S33: 0.1081 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 227 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.6889 46.2929 -11.9027 REMARK 3 T TENSOR REMARK 3 T11: 0.2070 T22: 0.2633 REMARK 3 T33: 0.2057 T12: -0.0242 REMARK 3 T13: 0.0338 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 3.0819 L22: 3.3033 REMARK 3 L33: 0.8999 L12: 1.2228 REMARK 3 L13: 0.6470 L23: 1.2107 REMARK 3 S TENSOR REMARK 3 S11: 0.2403 S12: -0.2062 S13: -0.1453 REMARK 3 S21: 0.1711 S22: -0.3226 S23: -0.0544 REMARK 3 S31: 0.1092 S32: -0.2082 S33: 0.0623 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 284 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6756 62.2986 -14.4125 REMARK 3 T TENSOR REMARK 3 T11: 0.2033 T22: 0.2344 REMARK 3 T33: 0.3042 T12: 0.0045 REMARK 3 T13: 0.0155 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 2.9018 L22: 3.3468 REMARK 3 L33: 3.3443 L12: 2.0959 REMARK 3 L13: 0.3312 L23: 0.5551 REMARK 3 S TENSOR REMARK 3 S11: -0.0469 S12: 0.0887 S13: 0.2281 REMARK 3 S21: -0.1511 S22: 0.0012 S23: -0.2236 REMARK 3 S31: -0.2735 S32: 0.0921 S33: -0.0403 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 334 THROUGH 355 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0757 52.9636 -11.1312 REMARK 3 T TENSOR REMARK 3 T11: 0.3256 T22: 0.4902 REMARK 3 T33: 0.7610 T12: 0.0427 REMARK 3 T13: -0.0023 T23: 0.0540 REMARK 3 L TENSOR REMARK 3 L11: 1.6129 L22: 5.3417 REMARK 3 L33: 3.4426 L12: 1.6270 REMARK 3 L13: -1.7123 L23: 0.2434 REMARK 3 S TENSOR REMARK 3 S11: 0.0414 S12: -0.1040 S13: -0.4445 REMARK 3 S21: 0.1739 S22: -0.2020 S23: -0.8200 REMARK 3 S31: 0.2604 S32: 0.8199 S33: 0.2609 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 25 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0277 10.2493 -36.8582 REMARK 3 T TENSOR REMARK 3 T11: 1.2305 T22: 1.1826 REMARK 3 T33: 1.3514 T12: -0.2218 REMARK 3 T13: -0.2766 T23: 0.1001 REMARK 3 L TENSOR REMARK 3 L11: 8.8506 L22: 8.6883 REMARK 3 L33: 4.3113 L12: -8.1815 REMARK 3 L13: -6.1723 L23: 5.7902 REMARK 3 S TENSOR REMARK 3 S11: 0.0193 S12: 0.1656 S13: -0.0372 REMARK 3 S21: -0.3730 S22: -0.1101 S23: 0.0663 REMARK 3 S31: 0.1622 S32: -0.1008 S33: -0.0070 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4V2W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1290061970. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97624 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79999 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 60.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.89000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENRTY 2OX0 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOUR DIFFUSION, SITTING DROP REMARK 280 (PROTEIN:WELL, 1:2), 277 K, PACT PREMIER/G10: 0.02 M SODIUM/ REMARK 280 POTASSIUM PHOSPHATE, 0.1 M BIS TRIS PROPANE 7.5, 20 % W/V PEG REMARK 280 3350, PH 7.5, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 50.35550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 74.87000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.35550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 74.87000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 GLU A 4 REMARK 465 SER A 5 REMARK 465 GLU A 6 REMARK 465 LYS A 355 REMARK 465 GLU A 356 REMARK 465 SER A 357 REMARK 465 GLU A 358 REMARK 465 LEU A 359 REMARK 465 MET B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 GLY B -12 REMARK 465 VAL B -11 REMARK 465 ASP B -10 REMARK 465 LEU B -9 REMARK 465 GLY B -8 REMARK 465 THR B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 356 REMARK 465 SER B 357 REMARK 465 GLU B 358 REMARK 465 LEU B 359 REMARK 465 PRO C 16 REMARK 465 ARG C 17 REMARK 465 LYS C 18 REMARK 465 GLN C 19 REMARK 465 LEU C 20 REMARK 465 ALA C 21 REMARK 465 THR C 22 REMARK 465 LYS C 23 REMARK 465 ALA C 24 REMARK 465 ALA C 29 REMARK 465 PRO C 30 REMARK 465 ALA C 31 REMARK 465 THR C 32 REMARK 465 GLY C 33 REMARK 465 GLY C 34 REMARK 465 VAL C 35 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 7 OG1 CG2 REMARK 470 ARG A 13 CZ NH1 NH2 REMARK 470 LYS A 51 CD CE NZ REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 LYS A 90 CE NZ REMARK 470 LYS A 99 CE NZ REMARK 470 ILE A 100 CD1 REMARK 470 ARG A 110 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 ARG A 154 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 163 CD OE1 OE2 REMARK 470 GLN A 232 OE1 NE2 REMARK 470 LEU A 248 CD1 CD2 REMARK 470 LYS A 310 CG CD CE NZ REMARK 470 ASP A 311 OD1 OD2 REMARK 470 LYS A 336 CD CE NZ REMARK 470 SER B 3 OG REMARK 470 GLU B 4 CG CD OE1 OE2 REMARK 470 SER B 5 OG REMARK 470 GLU B 6 CG CD OE1 OE2 REMARK 470 THR B 7 OG1 CG2 REMARK 470 GLU B 22 CG CD OE1 OE2 REMARK 470 ARG B 29 CZ NH1 NH2 REMARK 470 LYS B 51 CD CE NZ REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 ILE B 62 CD1 REMARK 470 ASP B 63 CG OD1 OD2 REMARK 470 ARG B 95 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 99 CG CD CE NZ REMARK 470 ARG B 110 CD NE CZ NH1 NH2 REMARK 470 GLU B 113 CD OE1 OE2 REMARK 470 GLU B 115 CD OE1 OE2 REMARK 470 LYS B 143 CG CD CE NZ REMARK 470 ARG B 154 CD NE CZ NH1 NH2 REMARK 470 LYS B 162 CG CD CE NZ REMARK 470 ARG B 221 CD NE CZ NH1 NH2 REMARK 470 LYS B 224 CD CE NZ REMARK 470 LYS B 252 NZ REMARK 470 LYS B 310 CE NZ REMARK 470 ASP B 311 CG OD1 OD2 REMARK 470 LYS B 314 NZ REMARK 470 LYS B 330 CD CE NZ REMARK 470 LYS B 336 CE NZ REMARK 470 LEU B 354 CG CD1 CD2 REMARK 470 LYS B 355 CG CD CE NZ REMARK 470 ARG C 26 CG CD NE CZ NH1 NH2 REMARK 470 SER C 28 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 169 H M3L C 27 0.66 REMARK 500 C GLU A 169 H M3L C 27 0.71 REMARK 500 HH12 ARG A 29 OE2 GLU A 352 1.42 REMARK 500 OD1 ASP A 64 HH22 ARG A 95 1.53 REMARK 500 HH11 ARG A 98 O1 GOL A 702 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH12 ARG A 95 OD1 ASP B 64 4555 1.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 171 -62.40 -98.23 REMARK 500 LYS A 182 -1.64 80.51 REMARK 500 SER B 112 -60.24 -104.94 REMARK 500 VAL B 171 -64.32 -101.02 REMARK 500 LYS B 182 -0.64 77.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2088 DISTANCE = 6.65 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 188 NE2 REMARK 620 2 GLU A 190 OE2 102.5 REMARK 620 3 HIS A 276 NE2 87.6 91.3 REMARK 620 4 OGA A 601 O2' 89.8 165.7 96.5 REMARK 620 5 OGA A 601 O1 167.4 90.1 92.2 77.6 REMARK 620 6 HOH A2152 O 88.0 85.2 173.6 88.0 93.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 234 SG REMARK 620 2 HIS A 240 NE2 109.3 REMARK 620 3 CYS A 306 SG 114.0 115.1 REMARK 620 4 CYS A 308 SG 115.6 91.3 109.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 188 NE2 REMARK 620 2 GLU B 190 OE2 101.5 REMARK 620 3 HIS B 276 NE2 87.3 86.1 REMARK 620 4 OGA B 601 O2' 89.3 168.4 98.8 REMARK 620 5 OGA B 601 O1 167.6 90.9 94.4 78.3 REMARK 620 6 HOH B2137 O 89.5 89.1 173.6 86.7 90.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 234 SG REMARK 620 2 HIS B 240 NE2 110.2 REMARK 620 3 CYS B 306 SG 112.4 115.7 REMARK 620 4 CYS B 308 SG 115.0 92.9 109.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OGA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OGA B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4V2V RELATED DB: PDB REMARK 900 JMJD2A COMPLEXED WITH NI(II), NOG AND HISTONE H3K27ME3 PEPTIDE (25- REMARK 900 29) ARK(ME3)SA DBREF 4V2W A 1 359 UNP O75164 KDM4A_HUMAN 1 359 DBREF 4V2W B 1 359 UNP O75164 KDM4A_HUMAN 1 359 DBREF 4V2W C 16 35 UNP Q16695 H31T_HUMAN 17 36 SEQADV 4V2W MET A -21 UNP O75164 EXPRESSION TAG SEQADV 4V2W HIS A -20 UNP O75164 EXPRESSION TAG SEQADV 4V2W HIS A -19 UNP O75164 EXPRESSION TAG SEQADV 4V2W HIS A -18 UNP O75164 EXPRESSION TAG SEQADV 4V2W HIS A -17 UNP O75164 EXPRESSION TAG SEQADV 4V2W HIS A -16 UNP O75164 EXPRESSION TAG SEQADV 4V2W HIS A -15 UNP O75164 EXPRESSION TAG SEQADV 4V2W SER A -14 UNP O75164 EXPRESSION TAG SEQADV 4V2W SER A -13 UNP O75164 EXPRESSION TAG SEQADV 4V2W GLY A -12 UNP O75164 EXPRESSION TAG SEQADV 4V2W VAL A -11 UNP O75164 EXPRESSION TAG SEQADV 4V2W ASP A -10 UNP O75164 EXPRESSION TAG SEQADV 4V2W LEU A -9 UNP O75164 EXPRESSION TAG SEQADV 4V2W GLY A -8 UNP O75164 EXPRESSION TAG SEQADV 4V2W THR A -7 UNP O75164 EXPRESSION TAG SEQADV 4V2W GLU A -6 UNP O75164 EXPRESSION TAG SEQADV 4V2W ASN A -5 UNP O75164 EXPRESSION TAG SEQADV 4V2W LEU A -4 UNP O75164 EXPRESSION TAG SEQADV 4V2W TYR A -3 UNP O75164 EXPRESSION TAG SEQADV 4V2W PHE A -2 UNP O75164 EXPRESSION TAG SEQADV 4V2W GLN A -1 UNP O75164 EXPRESSION TAG SEQADV 4V2W SER A 0 UNP O75164 EXPRESSION TAG SEQADV 4V2W MET B -21 UNP O75164 EXPRESSION TAG SEQADV 4V2W HIS B -20 UNP O75164 EXPRESSION TAG SEQADV 4V2W HIS B -19 UNP O75164 EXPRESSION TAG SEQADV 4V2W HIS B -18 UNP O75164 EXPRESSION TAG SEQADV 4V2W HIS B -17 UNP O75164 EXPRESSION TAG SEQADV 4V2W HIS B -16 UNP O75164 EXPRESSION TAG SEQADV 4V2W HIS B -15 UNP O75164 EXPRESSION TAG SEQADV 4V2W SER B -14 UNP O75164 EXPRESSION TAG SEQADV 4V2W SER B -13 UNP O75164 EXPRESSION TAG SEQADV 4V2W GLY B -12 UNP O75164 EXPRESSION TAG SEQADV 4V2W VAL B -11 UNP O75164 EXPRESSION TAG SEQADV 4V2W ASP B -10 UNP O75164 EXPRESSION TAG SEQADV 4V2W LEU B -9 UNP O75164 EXPRESSION TAG SEQADV 4V2W GLY B -8 UNP O75164 EXPRESSION TAG SEQADV 4V2W THR B -7 UNP O75164 EXPRESSION TAG SEQADV 4V2W GLU B -6 UNP O75164 EXPRESSION TAG SEQADV 4V2W ASN B -5 UNP O75164 EXPRESSION TAG SEQADV 4V2W LEU B -4 UNP O75164 EXPRESSION TAG SEQADV 4V2W TYR B -3 UNP O75164 EXPRESSION TAG SEQADV 4V2W PHE B -2 UNP O75164 EXPRESSION TAG SEQADV 4V2W GLN B -1 UNP O75164 EXPRESSION TAG SEQADV 4V2W SER B 0 UNP O75164 EXPRESSION TAG SEQRES 1 A 381 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 381 GLY THR GLU ASN LEU TYR PHE GLN SER MET ALA SER GLU SEQRES 3 A 381 SER GLU THR LEU ASN PRO SER ALA ARG ILE MET THR PHE SEQRES 4 A 381 TYR PRO THR MET GLU GLU PHE ARG ASN PHE SER ARG TYR SEQRES 5 A 381 ILE ALA TYR ILE GLU SER GLN GLY ALA HIS ARG ALA GLY SEQRES 6 A 381 LEU ALA LYS VAL VAL PRO PRO LYS GLU TRP LYS PRO ARG SEQRES 7 A 381 ALA SER TYR ASP ASP ILE ASP ASP LEU VAL ILE PRO ALA SEQRES 8 A 381 PRO ILE GLN GLN LEU VAL THR GLY GLN SER GLY LEU PHE SEQRES 9 A 381 THR GLN TYR ASN ILE GLN LYS LYS ALA MET THR VAL ARG SEQRES 10 A 381 GLU PHE ARG LYS ILE ALA ASN SER ASP LYS TYR CYS THR SEQRES 11 A 381 PRO ARG TYR SER GLU PHE GLU GLU LEU GLU ARG LYS TYR SEQRES 12 A 381 TRP LYS ASN LEU THR PHE ASN PRO PRO ILE TYR GLY ALA SEQRES 13 A 381 ASP VAL ASN GLY THR LEU TYR GLU LYS HIS VAL ASP GLU SEQRES 14 A 381 TRP ASN ILE GLY ARG LEU ARG THR ILE LEU ASP LEU VAL SEQRES 15 A 381 GLU LYS GLU SER GLY ILE THR ILE GLU GLY VAL ASN THR SEQRES 16 A 381 PRO TYR LEU TYR PHE GLY MET TRP LYS THR SER PHE ALA SEQRES 17 A 381 TRP HIS THR GLU ASP MET ASP LEU TYR SER ILE ASN TYR SEQRES 18 A 381 LEU HIS PHE GLY GLU PRO LYS SER TRP TYR SER VAL PRO SEQRES 19 A 381 PRO GLU HIS GLY LYS ARG LEU GLU ARG LEU ALA LYS GLY SEQRES 20 A 381 PHE PHE PRO GLY SER ALA GLN SER CYS GLU ALA PHE LEU SEQRES 21 A 381 ARG HIS LYS MET THR LEU ILE SER PRO LEU MET LEU LYS SEQRES 22 A 381 LYS TYR GLY ILE PRO PHE ASP LYS VAL THR GLN GLU ALA SEQRES 23 A 381 GLY GLU PHE MET ILE THR PHE PRO TYR GLY TYR HIS ALA SEQRES 24 A 381 GLY PHE ASN HIS GLY PHE ASN CYS ALA GLU SER THR ASN SEQRES 25 A 381 PHE ALA THR ARG ARG TRP ILE GLU TYR GLY LYS GLN ALA SEQRES 26 A 381 VAL LEU CYS SER CYS ARG LYS ASP MET VAL LYS ILE SER SEQRES 27 A 381 MET ASP VAL PHE VAL ARG LYS PHE GLN PRO GLU ARG TYR SEQRES 28 A 381 LYS LEU TRP LYS ALA GLY LYS ASP ASN THR VAL ILE ASP SEQRES 29 A 381 HIS THR LEU PRO THR PRO GLU ALA ALA GLU PHE LEU LYS SEQRES 30 A 381 GLU SER GLU LEU SEQRES 1 B 381 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 381 GLY THR GLU ASN LEU TYR PHE GLN SER MET ALA SER GLU SEQRES 3 B 381 SER GLU THR LEU ASN PRO SER ALA ARG ILE MET THR PHE SEQRES 4 B 381 TYR PRO THR MET GLU GLU PHE ARG ASN PHE SER ARG TYR SEQRES 5 B 381 ILE ALA TYR ILE GLU SER GLN GLY ALA HIS ARG ALA GLY SEQRES 6 B 381 LEU ALA LYS VAL VAL PRO PRO LYS GLU TRP LYS PRO ARG SEQRES 7 B 381 ALA SER TYR ASP ASP ILE ASP ASP LEU VAL ILE PRO ALA SEQRES 8 B 381 PRO ILE GLN GLN LEU VAL THR GLY GLN SER GLY LEU PHE SEQRES 9 B 381 THR GLN TYR ASN ILE GLN LYS LYS ALA MET THR VAL ARG SEQRES 10 B 381 GLU PHE ARG LYS ILE ALA ASN SER ASP LYS TYR CYS THR SEQRES 11 B 381 PRO ARG TYR SER GLU PHE GLU GLU LEU GLU ARG LYS TYR SEQRES 12 B 381 TRP LYS ASN LEU THR PHE ASN PRO PRO ILE TYR GLY ALA SEQRES 13 B 381 ASP VAL ASN GLY THR LEU TYR GLU LYS HIS VAL ASP GLU SEQRES 14 B 381 TRP ASN ILE GLY ARG LEU ARG THR ILE LEU ASP LEU VAL SEQRES 15 B 381 GLU LYS GLU SER GLY ILE THR ILE GLU GLY VAL ASN THR SEQRES 16 B 381 PRO TYR LEU TYR PHE GLY MET TRP LYS THR SER PHE ALA SEQRES 17 B 381 TRP HIS THR GLU ASP MET ASP LEU TYR SER ILE ASN TYR SEQRES 18 B 381 LEU HIS PHE GLY GLU PRO LYS SER TRP TYR SER VAL PRO SEQRES 19 B 381 PRO GLU HIS GLY LYS ARG LEU GLU ARG LEU ALA LYS GLY SEQRES 20 B 381 PHE PHE PRO GLY SER ALA GLN SER CYS GLU ALA PHE LEU SEQRES 21 B 381 ARG HIS LYS MET THR LEU ILE SER PRO LEU MET LEU LYS SEQRES 22 B 381 LYS TYR GLY ILE PRO PHE ASP LYS VAL THR GLN GLU ALA SEQRES 23 B 381 GLY GLU PHE MET ILE THR PHE PRO TYR GLY TYR HIS ALA SEQRES 24 B 381 GLY PHE ASN HIS GLY PHE ASN CYS ALA GLU SER THR ASN SEQRES 25 B 381 PHE ALA THR ARG ARG TRP ILE GLU TYR GLY LYS GLN ALA SEQRES 26 B 381 VAL LEU CYS SER CYS ARG LYS ASP MET VAL LYS ILE SER SEQRES 27 B 381 MET ASP VAL PHE VAL ARG LYS PHE GLN PRO GLU ARG TYR SEQRES 28 B 381 LYS LEU TRP LYS ALA GLY LYS ASP ASN THR VAL ILE ASP SEQRES 29 B 381 HIS THR LEU PRO THR PRO GLU ALA ALA GLU PHE LEU LYS SEQRES 30 B 381 GLU SER GLU LEU SEQRES 1 C 20 PRO ARG LYS GLN LEU ALA THR LYS ALA ALA ARG M3L SER SEQRES 2 C 20 ALA PRO ALA THR GLY GLY VAL MODRES 4V2W M3L C 27 LYS N-TRIMETHYLLYSINE HET M3L C 27 31 HET NI A 501 1 HET ZN A 502 1 HET CL A 503 1 HET OGA A 601 13 HET GOL A 702 14 HET NI B 501 1 HET ZN B 502 1 HET CL B 503 1 HET OGA B 601 13 HETNAM M3L N-TRIMETHYLLYSINE HETNAM NI NICKEL (II) ION HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM OGA N-OXALYLGLYCINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 M3L C9 H21 N2 O2 1+ FORMUL 4 NI 2(NI 2+) FORMUL 5 ZN 2(ZN 2+) FORMUL 6 CL 2(CL 1-) FORMUL 7 OGA 2(C4 H5 N O5) FORMUL 8 GOL C3 H8 O3 FORMUL 13 HOH *500(H2 O) HELIX 1 1 THR A 20 ARG A 25 1 6 HELIX 2 2 ASN A 26 GLN A 37 1 12 HELIX 3 3 GLY A 38 ALA A 42 5 5 HELIX 4 4 VAL A 94 ASN A 102 1 9 HELIX 5 5 GLU A 113 LEU A 125 1 13 HELIX 6 6 THR A 155 LEU A 157 5 3 HELIX 7 7 ASP A 158 GLU A 163 1 6 HELIX 8 8 GLU A 190 LEU A 194 5 5 HELIX 9 9 PRO A 212 GLU A 214 5 3 HELIX 10 10 HIS A 215 PHE A 227 1 13 HELIX 11 11 PHE A 227 CYS A 234 1 8 HELIX 12 12 ALA A 236 LYS A 241 5 6 HELIX 13 13 SER A 246 TYR A 253 1 8 HELIX 14 14 ARG A 295 ALA A 303 1 9 HELIX 15 15 MET A 317 GLN A 325 1 9 HELIX 16 16 GLN A 325 ALA A 334 1 10 HELIX 17 17 THR A 347 LEU A 354 5 8 HELIX 18 18 THR B 20 ARG B 25 1 6 HELIX 19 19 ASN B 26 GLN B 37 1 12 HELIX 20 20 GLY B 38 ALA B 42 5 5 HELIX 21 21 ASP B 61 ASP B 64 5 4 HELIX 22 22 VAL B 94 SER B 103 1 10 HELIX 23 23 GLU B 113 LEU B 125 1 13 HELIX 24 24 THR B 155 LEU B 157 5 3 HELIX 25 25 ASP B 158 GLY B 165 1 8 HELIX 26 26 GLU B 190 LEU B 194 5 5 HELIX 27 27 PRO B 212 GLU B 214 5 3 HELIX 28 28 HIS B 215 PHE B 227 1 13 HELIX 29 29 PHE B 227 CYS B 234 1 8 HELIX 30 30 ALA B 236 LYS B 241 5 6 HELIX 31 31 SER B 246 TYR B 253 1 8 HELIX 32 32 ARG B 295 ALA B 303 1 9 HELIX 33 33 MET B 317 GLN B 325 1 9 HELIX 34 34 ARG B 328 ALA B 334 1 7 HELIX 35 35 THR B 347 PHE B 353 5 7 SHEET 1 AA10 MET A 15 PHE A 17 0 SHEET 2 AA10 LEU A 44 VAL A 47 1 O LEU A 44 N MET A 15 SHEET 3 AA10 PHE A 267 THR A 270 -1 O PHE A 267 N VAL A 47 SHEET 4 AA10 TYR A 195 GLY A 203 -1 O SER A 196 N THR A 270 SHEET 5 AA10 ASN A 284 PHE A 291 -1 O CYS A 285 N HIS A 201 SHEET 6 AA10 TYR A 175 GLY A 179 -1 O TYR A 175 N SER A 288 SHEET 7 AA10 ILE A 131 ASN A 137 -1 O GLY A 133 N PHE A 178 SHEET 8 AA10 ILE A 71 GLN A 78 -1 O ILE A 71 N TYR A 132 SHEET 9 AA10 LEU A 81 GLN A 88 -1 O LEU A 81 N GLN A 78 SHEET 10 AA10 THR A 243 ILE A 245 -1 O LEU A 244 N PHE A 82 SHEET 1 AB 2 VAL A 66 ILE A 67 0 SHEET 2 AB 2 MET A 92 THR A 93 -1 O MET A 92 N ILE A 67 SHEET 1 AC 4 SER A 184 HIS A 188 0 SHEET 2 AC 4 TYR A 275 ASN A 280 -1 O HIS A 276 N HIS A 188 SHEET 3 AC 4 LYS A 206 VAL A 211 -1 O SER A 207 N PHE A 279 SHEET 4 AC 4 ASP A 258 GLN A 262 -1 O ASP A 258 N SER A 210 SHEET 1 BA10 MET B 15 PHE B 17 0 SHEET 2 BA10 LEU B 44 VAL B 47 1 O LEU B 44 N MET B 15 SHEET 3 BA10 PHE B 267 THR B 270 -1 O PHE B 267 N VAL B 47 SHEET 4 BA10 TYR B 195 GLY B 203 -1 O SER B 196 N THR B 270 SHEET 5 BA10 ASN B 284 PHE B 291 -1 O CYS B 285 N HIS B 201 SHEET 6 BA10 TYR B 175 GLY B 179 -1 O TYR B 175 N SER B 288 SHEET 7 BA10 ILE B 131 ASN B 137 -1 O GLY B 133 N PHE B 178 SHEET 8 BA10 ILE B 71 GLN B 78 -1 O ILE B 71 N TYR B 132 SHEET 9 BA10 LEU B 81 GLN B 88 -1 O LEU B 81 N GLN B 78 SHEET 10 BA10 THR B 243 ILE B 245 -1 O LEU B 244 N PHE B 82 SHEET 1 BB 2 VAL B 66 ILE B 67 0 SHEET 2 BB 2 MET B 92 THR B 93 -1 O MET B 92 N ILE B 67 SHEET 1 BC 4 SER B 184 HIS B 188 0 SHEET 2 BC 4 TYR B 275 ASN B 280 -1 O HIS B 276 N HIS B 188 SHEET 3 BC 4 LYS B 206 VAL B 211 -1 O SER B 207 N PHE B 279 SHEET 4 BC 4 ASP B 258 GLN B 262 -1 O ASP B 258 N SER B 210 LINK C ARG C 26 N M3L C 27 1555 1555 1.32 LINK C M3L C 27 N SER C 28 1555 1555 1.33 LINK NE2 HIS A 188 NI NI A 501 1555 1555 2.18 LINK OE2 GLU A 190 NI NI A 501 1555 1555 2.10 LINK SG CYS A 234 ZN ZN A 502 1555 1555 2.28 LINK NE2 HIS A 240 ZN ZN A 502 1555 1555 2.22 LINK NE2 HIS A 276 NI NI A 501 1555 1555 2.19 LINK SG CYS A 306 ZN ZN A 502 1555 1555 2.20 LINK SG CYS A 308 ZN ZN A 502 1555 1555 2.32 LINK NI NI A 501 O2' OGA A 601 1555 1555 2.19 LINK NI NI A 501 O1 OGA A 601 1555 1555 2.29 LINK NI NI A 501 O HOH A2152 1555 1555 2.32 LINK NE2 HIS B 188 NI NI B 501 1555 1555 2.17 LINK OE2 GLU B 190 NI NI B 501 1555 1555 2.10 LINK SG CYS B 234 ZN ZN B 502 1555 1555 2.31 LINK NE2 HIS B 240 ZN ZN B 502 1555 1555 2.10 LINK NE2 HIS B 276 NI NI B 501 1555 1555 2.13 LINK SG CYS B 306 ZN ZN B 502 1555 1555 2.18 LINK SG CYS B 308 ZN ZN B 502 1555 1555 2.35 LINK NI NI B 501 O2' OGA B 601 1555 1555 2.25 LINK NI NI B 501 O1 OGA B 601 1555 1555 2.15 LINK NI NI B 501 O HOH B2137 1555 1555 2.32 SITE 1 AC1 5 HIS A 188 GLU A 190 HIS A 276 OGA A 601 SITE 2 AC1 5 HOH A2152 SITE 1 AC2 4 CYS A 234 HIS A 240 CYS A 306 CYS A 308 SITE 1 AC3 3 PHE A 227 GLY A 229 SER A 230 SITE 1 AC4 11 TYR A 132 PHE A 185 HIS A 188 GLU A 190 SITE 2 AC4 11 SER A 196 ASN A 198 LYS A 206 TRP A 208 SITE 3 AC4 11 HIS A 276 NI A 501 HOH A2253 SITE 1 AC5 6 TYR A 59 ASP A 60 ARG A 98 PHE A 283 SITE 2 AC5 6 HOH A2045 HOH A2093 SITE 1 AC6 5 HIS B 188 GLU B 190 HIS B 276 OGA B 601 SITE 2 AC6 5 HOH B2137 SITE 1 AC7 4 CYS B 234 HIS B 240 CYS B 306 CYS B 308 SITE 1 AC8 2 PHE B 227 GLY B 229 SITE 1 AC9 12 TYR B 132 PHE B 185 HIS B 188 GLU B 190 SITE 2 AC9 12 SER B 196 ASN B 198 LYS B 206 TRP B 208 SITE 3 AC9 12 HIS B 276 NI B 501 HOH B2136 HOH B2247 CRYST1 100.711 149.740 57.508 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009929 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006678 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017389 0.00000