HEADER TRANSFERASE 16-OCT-14 4V36 TITLE THE STRUCTURE OF L-PGS FROM BACILLUS LICHENIFORMIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSYL-TRNA-DEPENDENT L-YSYL-PHOSPHATIDYLGYCEROL SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SOLUBLE DOMAIN, UNP RESIDUES 519-850; COMPND 5 EC: 2.3.2.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS LICHENIFORMIS; SOURCE 3 ORGANISM_TAXID: 1402; SOURCE 4 STRAIN: DSM13; SOURCE 5 ATCC: 14580; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET52B KEYWDS TRANSFERASE, T-RNA DEPENDENT AMINOACYLATION, BACTERIAL RESISTANCE KEYWDS 2 PROTEINS, L-PGS, LIPID HOMEOSTASIS, YFIX, PHENIX. MR_ROSETTA, LYSINE KEYWDS 3 AMIDE EXPDTA X-RAY DIFFRACTION AUTHOR J.KRAUSZE,S.HEBECKER,D.W.HEINZ,J.MOSER REVDAT 4 08-MAY-24 4V36 1 REMARK REVDAT 3 09-SEP-15 4V36 1 JRNL REVDAT 2 26-AUG-15 4V36 1 JRNL REVDAT 1 19-AUG-15 4V36 0 JRNL AUTH S.HEBECKER,J.KRAUSZE,T.HASENKAMPF,J.SCHNEIDER,M.GROENEWOLD, JRNL AUTH 2 J.REICHELT,D.JAHN,D.W.HEINZ,J.MOSER JRNL TITL STRUCTURES OF TWO BACTERIAL RESISTANCE FACTORS MEDIATING JRNL TITL 2 TRNA-DEPENDENT AMINOACYLATION OF PHOSPHATIDYLGLYCEROL WITH JRNL TITL 3 LYSINE OR ALANINE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 10691 2015 JRNL REFN ISSN 0027-8424 JRNL PMID 26261323 JRNL DOI 10.1073/PNAS.1511167112 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 80.6 REMARK 3 NUMBER OF REFLECTIONS : 36401 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1820 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.3424 - 4.9345 0.99 3278 165 0.1641 0.1800 REMARK 3 2 4.9345 - 3.9180 0.98 3217 159 0.1397 0.2008 REMARK 3 3 3.9180 - 3.4231 0.98 3275 175 0.1709 0.2053 REMARK 3 4 3.4231 - 3.1103 0.98 3231 169 0.1970 0.2650 REMARK 3 5 3.1103 - 2.8875 0.98 3216 188 0.2213 0.2969 REMARK 3 6 2.8875 - 2.7173 0.98 3230 184 0.2346 0.2694 REMARK 3 7 2.7173 - 2.5812 0.98 3229 156 0.2481 0.2960 REMARK 3 8 2.5812 - 2.4689 0.97 3184 171 0.2563 0.3091 REMARK 3 9 2.4689 - 2.3739 0.96 3208 162 0.2599 0.3090 REMARK 3 10 2.3739 - 2.2920 0.76 2522 123 0.2644 0.3154 REMARK 3 11 2.2920 - 2.2203 0.45 1450 89 0.2665 0.3467 REMARK 3 12 2.2203 - 2.1569 0.29 949 51 0.2636 0.3628 REMARK 3 13 2.1569 - 2.1001 0.18 592 28 0.2873 0.3452 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5378 REMARK 3 ANGLE : 0.541 7230 REMARK 3 CHIRALITY : 0.020 733 REMARK 3 PLANARITY : 0.003 937 REMARK 3 DIHEDRAL : 10.628 2010 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 523 THROUGH 625 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8398 56.2777 7.9220 REMARK 3 T TENSOR REMARK 3 T11: 0.2482 T22: 0.2655 REMARK 3 T33: 0.1652 T12: 0.0031 REMARK 3 T13: -0.0466 T23: -0.0916 REMARK 3 L TENSOR REMARK 3 L11: 1.4546 L22: 0.5151 REMARK 3 L33: 0.3962 L12: -0.8226 REMARK 3 L13: -0.0160 L23: 0.0856 REMARK 3 S TENSOR REMARK 3 S11: 0.0463 S12: 0.4087 S13: -0.5822 REMARK 3 S21: -0.2736 S22: -0.0636 S23: 0.2536 REMARK 3 S31: 0.0383 S32: -0.2013 S33: 0.0115 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 626 THROUGH 715 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1146 57.3673 34.5258 REMARK 3 T TENSOR REMARK 3 T11: 0.1163 T22: 0.1354 REMARK 3 T33: 0.0937 T12: -0.0220 REMARK 3 T13: -0.0093 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 0.3319 L22: 0.3202 REMARK 3 L33: 0.3154 L12: 0.2143 REMARK 3 L13: 0.0344 L23: 0.1759 REMARK 3 S TENSOR REMARK 3 S11: 0.0434 S12: -0.2803 S13: -0.0964 REMARK 3 S21: 0.0608 S22: -0.0773 S23: 0.0465 REMARK 3 S31: 0.0960 S32: 0.0364 S33: -0.0131 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 716 THROUGH 766 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8796 53.5928 34.8774 REMARK 3 T TENSOR REMARK 3 T11: 0.2084 T22: 0.1372 REMARK 3 T33: 0.0633 T12: -0.0308 REMARK 3 T13: 0.0073 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 0.9860 L22: 0.2189 REMARK 3 L33: 0.2001 L12: -0.1869 REMARK 3 L13: -0.3798 L23: -0.0320 REMARK 3 S TENSOR REMARK 3 S11: -0.0220 S12: -0.1319 S13: -0.3471 REMARK 3 S21: 0.0701 S22: -0.1003 S23: 0.0127 REMARK 3 S31: 0.0865 S32: 0.0453 S33: -0.1680 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 767 THROUGH 819 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.8056 55.3811 28.8775 REMARK 3 T TENSOR REMARK 3 T11: 0.1508 T22: 0.2488 REMARK 3 T33: 0.3115 T12: 0.0069 REMARK 3 T13: -0.0405 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 0.0300 L22: 0.0498 REMARK 3 L33: 0.2149 L12: -0.0288 REMARK 3 L13: -0.0754 L23: 0.1132 REMARK 3 S TENSOR REMARK 3 S11: -0.2627 S12: 0.0737 S13: -0.1362 REMARK 3 S21: 0.0025 S22: 0.1615 S23: -0.0629 REMARK 3 S31: 0.1658 S32: 0.0484 S33: -0.0280 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 820 THROUGH 850 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.4389 62.1711 16.8329 REMARK 3 T TENSOR REMARK 3 T11: 0.1554 T22: 0.1608 REMARK 3 T33: 0.1839 T12: 0.0150 REMARK 3 T13: 0.0197 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.0670 L22: 0.0506 REMARK 3 L33: 0.0257 L12: 0.0329 REMARK 3 L13: -0.0095 L23: 0.0141 REMARK 3 S TENSOR REMARK 3 S11: 0.0193 S12: -0.0005 S13: -0.1084 REMARK 3 S21: 0.0212 S22: -0.0888 S23: -0.1517 REMARK 3 S31: 0.1258 S32: 0.1455 S33: -0.0007 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 523 THROUGH 602 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3336 19.8668 33.0342 REMARK 3 T TENSOR REMARK 3 T11: 0.1895 T22: 0.1926 REMARK 3 T33: 0.1849 T12: -0.0346 REMARK 3 T13: 0.0262 T23: -0.0605 REMARK 3 L TENSOR REMARK 3 L11: 0.2144 L22: 0.1637 REMARK 3 L33: 0.2481 L12: 0.0536 REMARK 3 L13: 0.1137 L23: -0.1252 REMARK 3 S TENSOR REMARK 3 S11: 0.2495 S12: -0.1615 S13: 0.0760 REMARK 3 S21: 0.2849 S22: -0.1434 S23: 0.0712 REMARK 3 S31: -0.0795 S32: 0.0008 S33: 0.0543 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 603 THROUGH 715 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5007 20.5353 14.0447 REMARK 3 T TENSOR REMARK 3 T11: 0.0785 T22: 0.0982 REMARK 3 T33: 0.1002 T12: 0.0131 REMARK 3 T13: 0.0034 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.6691 L22: 0.9515 REMARK 3 L33: 0.3904 L12: 0.0797 REMARK 3 L13: 0.0061 L23: -0.1872 REMARK 3 S TENSOR REMARK 3 S11: 0.0433 S12: 0.1300 S13: 0.1851 REMARK 3 S21: -0.0360 S22: -0.0937 S23: 0.0666 REMARK 3 S31: -0.0717 S32: 0.0451 S33: -0.1515 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 716 THROUGH 765 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2095 15.8869 8.1777 REMARK 3 T TENSOR REMARK 3 T11: 0.1236 T22: 0.1661 REMARK 3 T33: 0.1132 T12: 0.0172 REMARK 3 T13: 0.0018 T23: 0.0388 REMARK 3 L TENSOR REMARK 3 L11: 0.0935 L22: 0.2130 REMARK 3 L33: 0.0497 L12: 0.0138 REMARK 3 L13: 0.0769 L23: -0.0248 REMARK 3 S TENSOR REMARK 3 S11: 0.1139 S12: 0.1246 S13: 0.0326 REMARK 3 S21: -0.1231 S22: -0.0760 S23: -0.0039 REMARK 3 S31: 0.0787 S32: 0.0974 S33: 0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 766 THROUGH 819 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4281 26.7420 7.3617 REMARK 3 T TENSOR REMARK 3 T11: 0.2117 T22: 0.1753 REMARK 3 T33: 0.2290 T12: 0.0286 REMARK 3 T13: -0.0556 T23: 0.0705 REMARK 3 L TENSOR REMARK 3 L11: 0.0542 L22: 0.0107 REMARK 3 L33: -0.0005 L12: 0.0202 REMARK 3 L13: 0.0230 L23: 0.0117 REMARK 3 S TENSOR REMARK 3 S11: 0.0068 S12: 0.0151 S13: 0.1690 REMARK 3 S21: -0.2689 S22: -0.0479 S23: 0.1381 REMARK 3 S31: -0.1314 S32: -0.0995 S33: 0.0472 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 820 THROUGH 848 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2056 34.3695 22.4188 REMARK 3 T TENSOR REMARK 3 T11: 0.2357 T22: -0.0205 REMARK 3 T33: 0.5230 T12: 0.0353 REMARK 3 T13: 0.1090 T23: -0.1103 REMARK 3 L TENSOR REMARK 3 L11: 0.1618 L22: 0.2002 REMARK 3 L33: 0.0928 L12: 0.1810 REMARK 3 L13: -0.1157 L23: -0.1245 REMARK 3 S TENSOR REMARK 3 S11: 0.1291 S12: -0.0435 S13: 0.4162 REMARK 3 S21: 0.1318 S22: -0.0359 S23: 0.2804 REMARK 3 S31: -0.3595 S32: -0.0124 S33: 0.2426 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4V36 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1290061974. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033184 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : SI-111 AND SI-113 REFLECTION REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36408 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 37.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 19.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NACL; 0.1 M PHOSPHATE-CITRATE PH REMARK 280 4.2; 10%(W/V) GLYCEROL; 0.5 MM L-LYSINE AMIDE; PRIOR TO CRYO- REMARK 280 COOLING, 30% (V/V) WERE ADDED AS A CRYOPROTECTANT REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 516 REMARK 465 PRO A 517 REMARK 465 GLY A 518 REMARK 465 ASN A 519 REMARK 465 ARG A 520 REMARK 465 LYS A 521 REMARK 465 THR A 522 REMARK 465 THR A 784 REMARK 465 PHE A 785 REMARK 465 GLN A 786 REMARK 465 GLY B 516 REMARK 465 PRO B 517 REMARK 465 GLY B 518 REMARK 465 ASN B 519 REMARK 465 ARG B 520 REMARK 465 LYS B 521 REMARK 465 THR B 522 REMARK 465 THR B 783 REMARK 465 THR B 784 REMARK 465 PHE B 785 REMARK 465 GLN B 786 REMARK 465 SER B 787 REMARK 465 PHE B 788 REMARK 465 TRP B 789 REMARK 465 THR B 790 REMARK 465 GLU B 791 REMARK 465 ARG B 792 REMARK 465 TYR B 805 REMARK 465 SER B 806 REMARK 465 THR B 849 REMARK 465 LYS B 850 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 585 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 603 CG CD CE NZ REMARK 470 LYS A 646 CG CD CE NZ REMARK 470 LYS A 647 CG CD CE NZ REMARK 470 GLU A 733 CG CD OE1 OE2 REMARK 470 LYS A 749 CG CD CE NZ REMARK 470 LYS A 830 CG CD CE NZ REMARK 470 LYS B 646 CG CD CE NZ REMARK 470 GLU B 717 CG CD OE1 OE2 REMARK 470 LYS B 749 CG CD CE NZ REMARK 470 LEU B 793 CG CD1 CD2 REMARK 470 ILE B 797 CG1 CG2 CD1 REMARK 470 PHE B 798 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN B 799 CG OD1 ND2 REMARK 470 ASN B 800 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 544 -152.55 -123.68 REMARK 500 ARG A 648 31.75 -89.50 REMARK 500 PHE A 696 -83.22 58.71 REMARK 500 ARG A 732 -142.74 -134.57 REMARK 500 ARG A 732 -146.04 -112.84 REMARK 500 GLU A 733 -104.72 -77.02 REMARK 500 GLU A 733 -104.72 -75.25 REMARK 500 VAL A 781 -76.67 56.72 REMARK 500 VAL A 801 76.04 -57.23 REMARK 500 SER A 802 -35.46 -176.71 REMARK 500 PHE A 807 -73.87 59.98 REMARK 500 ASN B 544 -156.11 -132.62 REMARK 500 PHE B 696 -83.16 60.73 REMARK 500 ARG B 732 -138.06 52.62 REMARK 500 ASP B 739 -72.51 -114.87 REMARK 500 ASN B 780 61.80 -65.10 REMARK 500 VAL B 781 118.05 -161.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LYN A 1851 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 1852 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 1849 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4V34 RELATED DB: PDB REMARK 900 THE STRUCTURE OF A-PGS FROM PSEUDOMONAS AERUGINOSA ( SEMET REMARK 900 DERIVATIVE) REMARK 900 RELATED ID: 4V35 RELATED DB: PDB REMARK 900 THE STRUCTURE OF A-PGS FROM PSEUDOMONAS AERUGINOSA DBREF 4V36 A 519 850 UNP E5W5M1 E5W5M1_9BACI 519 850 DBREF 4V36 B 519 850 UNP E5W5M1 E5W5M1_9BACI 519 850 SEQADV 4V36 GLY A 516 UNP E5W5M1 EXPRESSION TAG SEQADV 4V36 PRO A 517 UNP E5W5M1 EXPRESSION TAG SEQADV 4V36 GLY A 518 UNP E5W5M1 EXPRESSION TAG SEQADV 4V36 GLY B 516 UNP E5W5M1 EXPRESSION TAG SEQADV 4V36 PRO B 517 UNP E5W5M1 EXPRESSION TAG SEQADV 4V36 GLY B 518 UNP E5W5M1 EXPRESSION TAG SEQRES 1 A 335 GLY PRO GLY ASN ARG LYS THR LYS GLU ILE GLY GLU GLU SEQRES 2 A 335 PRO ASP PRO GLU LYS LEU GLU ALA PHE LEU GLU GLU LYS SEQRES 3 A 335 GLY GLY ASN ALA LEU SER HIS LEU GLY PHE LEU GLY ASP SEQRES 4 A 335 LYS ARG PHE PHE TYR SER SER ASP GLY ASN ALA LEU ILE SEQRES 5 A 335 GLN PHE ALA LYS VAL GLY GLN ARG LEU VAL VAL LEU GLY SEQRES 6 A 335 ASP PRO SER GLY ARG GLU ASP SER PHE PRO LEU VAL ILE SEQRES 7 A 335 LYS GLU PHE LEU HIS ALA ALA ASP GLN LYS GLY TYR LEU SEQRES 8 A 335 VAL ILE PHE TYR GLN ILE GLU ARG GLU ASP MET ALA LEU SEQRES 9 A 335 TYR HIS ASP PHE GLY TYR ARG PHE PHE LYS LEU GLY GLU SEQRES 10 A 335 GLU ALA ILE VAL ASP LEU ASP THR PHE THR ILE SER GLY SEQRES 11 A 335 LYS LYS ARG ALA GLY LEU ARG ALA ILE TYR ASN ARG PHE SEQRES 12 A 335 GLU ARG GLU GLY TYR THR PHE HIS VAL GLU GLN PRO PRO SEQRES 13 A 335 PHE SER ARG GLU PHE LEU ASN GLU LEU ARG GLN VAL SER SEQRES 14 A 335 ASP GLU TRP LEU GLY ARG LYS LYS GLU LYS GLY PHE SER SEQRES 15 A 335 LEU GLY PHE PHE GLN GLU ASP TYR LEU GLN LYS ALA PRO SEQRES 16 A 335 ILE ALA VAL LEU LYS SER GLU GLU GLY GLU ILE VAL ALA SEQRES 17 A 335 PHE MET ASN ILE MET PRO MET TYR ARG GLU GLY GLU ILE SEQRES 18 A 335 SER ILE ASP LEU MET ARG TYR SER LYS LYS ALA PRO LYS SEQRES 19 A 335 GLY ILE MET ASP ALA LEU PHE ILE TYR LEU PHE GLN TRP SEQRES 20 A 335 GLY LYS GLU GLN GLY TYR THR ALA PHE ASN MET GLY MET SEQRES 21 A 335 ALA PRO LEU SER ASN VAL GLY THR THR PHE GLN SER PHE SEQRES 22 A 335 TRP THR GLU ARG LEU ALA ALA VAL ILE PHE ASN ASN VAL SEQRES 23 A 335 SER TYR MET TYR SER PHE SER GLY LEU ARG SER PHE LYS SEQRES 24 A 335 GLU LYS TYR LYS PRO VAL TRP ARG GLY LYS TYR LEU ALA SEQRES 25 A 335 TYR ARG LYS ASN ARG SER LEU PRO VAL THR MET ILE LEU SEQRES 26 A 335 VAL THR ARG LEU ILE GLY ARG ARG THR LYS SEQRES 1 B 335 GLY PRO GLY ASN ARG LYS THR LYS GLU ILE GLY GLU GLU SEQRES 2 B 335 PRO ASP PRO GLU LYS LEU GLU ALA PHE LEU GLU GLU LYS SEQRES 3 B 335 GLY GLY ASN ALA LEU SER HIS LEU GLY PHE LEU GLY ASP SEQRES 4 B 335 LYS ARG PHE PHE TYR SER SER ASP GLY ASN ALA LEU ILE SEQRES 5 B 335 GLN PHE ALA LYS VAL GLY GLN ARG LEU VAL VAL LEU GLY SEQRES 6 B 335 ASP PRO SER GLY ARG GLU ASP SER PHE PRO LEU VAL ILE SEQRES 7 B 335 LYS GLU PHE LEU HIS ALA ALA ASP GLN LYS GLY TYR LEU SEQRES 8 B 335 VAL ILE PHE TYR GLN ILE GLU ARG GLU ASP MET ALA LEU SEQRES 9 B 335 TYR HIS ASP PHE GLY TYR ARG PHE PHE LYS LEU GLY GLU SEQRES 10 B 335 GLU ALA ILE VAL ASP LEU ASP THR PHE THR ILE SER GLY SEQRES 11 B 335 LYS LYS ARG ALA GLY LEU ARG ALA ILE TYR ASN ARG PHE SEQRES 12 B 335 GLU ARG GLU GLY TYR THR PHE HIS VAL GLU GLN PRO PRO SEQRES 13 B 335 PHE SER ARG GLU PHE LEU ASN GLU LEU ARG GLN VAL SER SEQRES 14 B 335 ASP GLU TRP LEU GLY ARG LYS LYS GLU LYS GLY PHE SER SEQRES 15 B 335 LEU GLY PHE PHE GLN GLU ASP TYR LEU GLN LYS ALA PRO SEQRES 16 B 335 ILE ALA VAL LEU LYS SER GLU GLU GLY GLU ILE VAL ALA SEQRES 17 B 335 PHE MET ASN ILE MET PRO MET TYR ARG GLU GLY GLU ILE SEQRES 18 B 335 SER ILE ASP LEU MET ARG TYR SER LYS LYS ALA PRO LYS SEQRES 19 B 335 GLY ILE MET ASP ALA LEU PHE ILE TYR LEU PHE GLN TRP SEQRES 20 B 335 GLY LYS GLU GLN GLY TYR THR ALA PHE ASN MET GLY MET SEQRES 21 B 335 ALA PRO LEU SER ASN VAL GLY THR THR PHE GLN SER PHE SEQRES 22 B 335 TRP THR GLU ARG LEU ALA ALA VAL ILE PHE ASN ASN VAL SEQRES 23 B 335 SER TYR MET TYR SER PHE SER GLY LEU ARG SER PHE LYS SEQRES 24 B 335 GLU LYS TYR LYS PRO VAL TRP ARG GLY LYS TYR LEU ALA SEQRES 25 B 335 TYR ARG LYS ASN ARG SER LEU PRO VAL THR MET ILE LEU SEQRES 26 B 335 VAL THR ARG LEU ILE GLY ARG ARG THR LYS HET LYN A1851 10 HET TRS A1852 8 HET TRS B1849 8 HETNAM LYN 2,6-DIAMINO-HEXANOIC ACID AMIDE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 3 LYN C6 H16 N3 O 1+ FORMUL 4 TRS 2(C4 H12 N O3 1+) FORMUL 6 HOH *192(H2 O) HELIX 1 1 ASP A 530 LYS A 541 1 12 HELIX 2 2 LEU A 546 GLY A 553 5 8 HELIX 3 3 SER A 588 LYS A 603 1 16 HELIX 4 4 GLU A 613 GLU A 615 5 3 HELIX 5 5 ASP A 616 ASP A 622 1 7 HELIX 6 6 ARG A 648 GLU A 661 1 14 HELIX 7 7 SER A 673 GLY A 689 1 17 HELIX 8 8 GLN A 702 GLN A 707 1 6 HELIX 9 9 GLY A 750 GLY A 767 1 18 HELIX 10 10 THR A 790 VAL A 801 1 12 HELIX 11 11 LEU A 810 LYS A 816 1 7 HELIX 12 12 LYS A 830 ARG A 832 5 3 HELIX 13 13 SER A 833 GLY A 846 1 14 HELIX 14 14 ASP B 530 LYS B 541 1 12 HELIX 15 15 LEU B 546 GLY B 553 5 8 HELIX 16 16 SER B 588 LYS B 603 1 16 HELIX 17 17 GLU B 613 PHE B 623 5 11 HELIX 18 18 GLY B 645 LYS B 647 5 3 HELIX 19 19 ARG B 648 GLU B 661 1 14 HELIX 20 20 SER B 673 GLY B 689 1 17 HELIX 21 21 GLN B 702 GLN B 707 1 6 HELIX 22 22 GLY B 750 GLN B 766 1 17 HELIX 23 23 ALA B 795 MET B 804 1 10 HELIX 24 24 GLY B 809 LYS B 816 1 8 HELIX 25 25 SER B 833 ARG B 847 1 15 SHEET 1 AA 2 ARG A 556 TYR A 559 0 SHEET 2 AA 2 ALA A 565 VAL A 572 -1 O ILE A 567 N PHE A 558 SHEET 1 AB 2 SER A 583 GLY A 584 0 SHEET 2 AB 2 ALA A 565 VAL A 572 1 O LEU A 566 N SER A 583 SHEET 1 AC11 THR A 664 GLU A 668 0 SHEET 2 AC11 ILE A 711 LYS A 715 -1 O ILE A 711 N GLU A 668 SHEET 3 AC11 ILE A 721 MET A 728 -1 N VAL A 722 O LEU A 714 SHEET 4 AC11 GLU A 735 TYR A 743 -1 O SER A 737 N MET A 728 SHEET 5 AC11 ALA A 770 ALA A 776 1 O ALA A 770 N ILE A 736 SHEET 6 AC11 ARG A 626 ASP A 637 -1 O GLU A 632 N ALA A 776 SHEET 7 AC11 VAL A 820 TYR A 828 -1 O VAL A 820 N ILE A 635 SHEET 8 AC11 LEU A 606 ILE A 612 -1 O PHE A 609 N ALA A 827 SHEET 9 AC11 ARG A 575 LEU A 579 1 O LEU A 576 N ILE A 608 SHEET 10 AC11 ALA A 565 VAL A 572 -1 O GLN A 568 N LEU A 579 SHEET 11 AC11 SER A 583 GLY A 584 1 O SER A 583 N LEU A 566 SHEET 1 AD11 THR A 664 GLU A 668 0 SHEET 2 AD11 ILE A 711 LYS A 715 -1 O ILE A 711 N GLU A 668 SHEET 3 AD11 ILE A 721 MET A 728 -1 N VAL A 722 O LEU A 714 SHEET 4 AD11 GLU A 735 TYR A 743 -1 O SER A 737 N MET A 728 SHEET 5 AD11 ALA A 770 ALA A 776 1 O ALA A 770 N ILE A 736 SHEET 6 AD11 ARG A 626 ASP A 637 -1 O GLU A 632 N ALA A 776 SHEET 7 AD11 VAL A 820 TYR A 828 -1 O VAL A 820 N ILE A 635 SHEET 8 AD11 LEU A 606 ILE A 612 -1 O PHE A 609 N ALA A 827 SHEET 9 AD11 ARG A 575 LEU A 579 1 O LEU A 576 N ILE A 608 SHEET 10 AD11 ALA A 565 VAL A 572 -1 O GLN A 568 N LEU A 579 SHEET 11 AD11 ARG A 556 TYR A 559 -1 O ARG A 556 N PHE A 569 SHEET 1 BA 2 ARG B 556 TYR B 559 0 SHEET 2 BA 2 ALA B 565 VAL B 572 -1 O ILE B 567 N PHE B 558 SHEET 1 BB 2 SER B 583 GLY B 584 0 SHEET 2 BB 2 ALA B 565 VAL B 572 1 O LEU B 566 N SER B 583 SHEET 1 BC11 THR B 664 GLU B 668 0 SHEET 2 BC11 ILE B 711 LYS B 715 -1 O ILE B 711 N GLU B 668 SHEET 3 BC11 ILE B 721 TYR B 731 -1 N VAL B 722 O LEU B 714 SHEET 4 BC11 GLU B 735 TYR B 743 -1 O GLU B 735 N TYR B 731 SHEET 5 BC11 ALA B 770 ALA B 776 1 O ALA B 770 N ILE B 736 SHEET 6 BC11 TYR B 625 ASP B 637 -1 O GLU B 632 N ALA B 776 SHEET 7 BC11 VAL B 820 ARG B 829 -1 O VAL B 820 N ILE B 635 SHEET 8 BC11 LEU B 606 ILE B 612 -1 O PHE B 609 N ALA B 827 SHEET 9 BC11 ARG B 575 LEU B 579 1 O LEU B 576 N ILE B 608 SHEET 10 BC11 ALA B 565 VAL B 572 -1 O GLN B 568 N LEU B 579 SHEET 11 BC11 SER B 583 GLY B 584 1 O SER B 583 N LEU B 566 SHEET 1 BD11 THR B 664 GLU B 668 0 SHEET 2 BD11 ILE B 711 LYS B 715 -1 O ILE B 711 N GLU B 668 SHEET 3 BD11 ILE B 721 TYR B 731 -1 N VAL B 722 O LEU B 714 SHEET 4 BD11 GLU B 735 TYR B 743 -1 O GLU B 735 N TYR B 731 SHEET 5 BD11 ALA B 770 ALA B 776 1 O ALA B 770 N ILE B 736 SHEET 6 BD11 TYR B 625 ASP B 637 -1 O GLU B 632 N ALA B 776 SHEET 7 BD11 VAL B 820 ARG B 829 -1 O VAL B 820 N ILE B 635 SHEET 8 BD11 LEU B 606 ILE B 612 -1 O PHE B 609 N ALA B 827 SHEET 9 BD11 ARG B 575 LEU B 579 1 O LEU B 576 N ILE B 608 SHEET 10 BD11 ALA B 565 VAL B 572 -1 O GLN B 568 N LEU B 579 SHEET 11 BD11 ARG B 556 TYR B 559 -1 O ARG B 556 N PHE B 569 CISPEP 1 PRO A 670 PRO A 671 0 4.14 CISPEP 2 PRO B 670 PRO B 671 0 1.05 SITE 1 AC1 7 TRP A 687 LYS A 694 GLY A 699 ASP A 739 SITE 2 AC1 7 LEU A 740 MET A 741 ARG A 742 SITE 1 AC2 8 ARG A 614 LYS A 629 GLU A 632 TRP A 821 SITE 2 AC2 8 ARG A 822 GLY A 823 TYR A 825 HOH A2018 SITE 1 AC3 7 ARG B 614 LYS B 629 GLU B 632 TRP B 821 SITE 2 AC3 7 ARG B 822 GLY B 823 TYR B 825 CRYST1 46.890 66.260 71.150 112.43 94.07 98.94 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021327 0.003355 0.003112 0.00000 SCALE2 0.000000 0.015278 0.006636 0.00000 SCALE3 0.000000 0.000000 0.015362 0.00000 MTRIX1 1 -0.574190 0.676970 0.460450 -19.71729 1 MTRIX2 1 0.763120 0.646260 0.001470 -35.50731 1 MTRIX3 1 -0.296580 0.352220 -0.887680 27.16199 1