HEADER TRANSFERASE/TRANSFERASE INHIBITOR 13-AUG-14 4W1W TITLE CRYSTAL STRUCTURE OF 7,8-DIAMINOPELARGONIC ACID SYNTHASE (BIOA) FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS, COMPLEXED WITH 7-(DIETHYLAMINO)-3- TITLE 3 (THIOPHENE-2-CARBONYL)-2H-CHROMEN-2-ONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 7,8-DIAMINO-PELARGONIC ACID AMINOTRANSFERASE,DAPA COMPND 5 AMINOTRANSFERASE,8-DIAMINONONANOATE SYNTHASE,DANS,DIAMINOPELARGONIC COMPND 6 ACID SYNTHASE; COMPND 7 EC: 2.6.1.62; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83331; SOURCE 4 STRAIN: CDC 1551 / OSHKOSH; SOURCE 5 GENE: BIOA, MT1619; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR COMPLEX TRANSAMINASE PLP, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.C.FINZEL,D.RAN REVDAT 3 27-DEC-23 4W1W 1 REMARK LINK REVDAT 2 22-NOV-17 4W1W 1 SOURCE JRNL REMARK REVDAT 1 04-FEB-15 4W1W 0 JRNL AUTH S.W.PARK,D.E.CASALENA,D.J.WILSON,R.DAI,P.P.NAG,F.LIU, JRNL AUTH 2 J.P.BOYCE,J.A.BITTKER,S.L.SCHREIBER,B.C.FINZEL, JRNL AUTH 3 D.SCHNAPPINGER,C.C.ALDRICH JRNL TITL TARGET-BASED IDENTIFICATION OF WHOLE-CELL ACTIVE INHIBITORS JRNL TITL 2 OF BIOTIN BIOSYNTHESIS IN MYCOBACTERIUM TUBERCULOSIS. JRNL REF CHEM.BIOL. V. 22 76 2015 JRNL REFN ISSN 1074-5521 JRNL PMID 25556942 JRNL DOI 10.1016/J.CHEMBIOL.2014.11.012 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 65977 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3324 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3281 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 169 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6412 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 109 REMARK 3 SOLVENT ATOMS : 738 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.26000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 0.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.169 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.646 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6864 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9413 ; 1.264 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 903 ; 5.617 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 262 ;34.985 ;22.366 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 996 ;13.710 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 51 ;14.266 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1074 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5283 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4W1W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000203162. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK, D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK, D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72681 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 63.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 25 MM HEPES, 50 MM NACL, 0.1 REMARK 280 MM TCEP RESERVOIR:10% PEG 8000, 0.1M MAGNESIUM CHLORIDE, 0.1M REMARK 280 HEPES PH 7.5 CRYO: 15% PEG 400 IN RESERVOIR SOLUTION, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.50000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 102.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.50000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU B 436 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG B 403 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 400 O HOH B 872 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 403 NE ARG B 403 CZ -0.408 REMARK 500 ARG B 403 CZ ARG B 403 NH1 -0.264 REMARK 500 ARG B 403 CZ ARG B 403 NH2 0.590 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 403 CD - NE - CZ ANGL. DEV. = 40.6 DEGREES REMARK 500 ARG B 403 NH1 - CZ - NH2 ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG B 403 NE - CZ - NH1 ANGL. DEV. = -17.3 DEGREES REMARK 500 ARG B 403 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 65 2.86 80.51 REMARK 500 MET A 87 109.93 -163.49 REMARK 500 MET A 174 70.04 22.80 REMARK 500 TRP A 178 -163.78 -104.64 REMARK 500 THR A 179 135.40 64.48 REMARK 500 ASP A 180 20.95 -75.05 REMARK 500 VAL A 222 -50.51 68.98 REMARK 500 ALA A 373 47.37 -85.88 REMARK 500 ARG A 403 -129.18 50.04 REMARK 500 TRP B 65 -0.26 76.18 REMARK 500 MET B 87 111.95 -167.36 REMARK 500 MET B 87 111.95 -164.90 REMARK 500 ARG B 148 -4.64 -141.32 REMARK 500 THR B 179 122.97 -36.11 REMARK 500 ASP B 180 -6.54 85.99 REMARK 500 VAL B 222 -51.09 71.57 REMARK 500 ALA B 373 46.90 -86.48 REMARK 500 ARG B 403 -127.62 44.92 REMARK 500 ARG B 403 -128.00 47.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 895 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH A 955 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A 983 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 988 DISTANCE = 7.35 ANGSTROMS REMARK 525 HOH A 991 DISTANCE = 8.15 ANGSTROMS REMARK 525 HOH B 807 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH B 896 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B 926 DISTANCE = 9.60 ANGSTROMS REMARK 525 HOH B 929 DISTANCE = 6.29 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3G8 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3G8 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4W1X RELATED DB: PDB REMARK 900 RELATED ID: 4W1W RELATED DB: PDB DBREF 4W1W A 8 436 UNP P9WQ80 BIOA_MYCTO 8 436 DBREF 4W1W B 8 436 UNP P9WQ80 BIOA_MYCTO 8 436 SEQRES 1 A 429 LEU THR PRO GLU GLN ILE ILE ALA VAL ASP GLY ALA HIS SEQRES 2 A 429 LEU TRP HIS PRO TYR SER SER ILE GLY ARG GLU ALA VAL SEQRES 3 A 429 SER PRO VAL VAL ALA VAL ALA ALA HIS GLY ALA TRP LEU SEQRES 4 A 429 THR LEU ILE ARG ASP GLY GLN PRO ILE GLU VAL LEU ASP SEQRES 5 A 429 ALA MET SER SER TRP TRP THR ALA ILE HIS GLY HIS GLY SEQRES 6 A 429 HIS PRO ALA LEU ASP GLN ALA LEU THR THR GLN LEU ARG SEQRES 7 A 429 VAL MET ASN HIS VAL MET PHE GLY GLY LEU THR HIS GLU SEQRES 8 A 429 PRO ALA ALA ARG LEU ALA LYS LEU LEU VAL ASP ILE THR SEQRES 9 A 429 PRO ALA GLY LEU ASP THR VAL PHE PHE SER ASP SER GLY SEQRES 10 A 429 SER VAL SER VAL GLU VAL ALA ALA LYS MET ALA LEU GLN SEQRES 11 A 429 TYR TRP ARG GLY ARG GLY LEU PRO GLY LYS ARG ARG LEU SEQRES 12 A 429 MET THR TRP ARG GLY GLY TYR HIS GLY ASP THR PHE LEU SEQRES 13 A 429 ALA MET SER ILE CYS ASP PRO HIS GLY GLY MET HIS SER SEQRES 14 A 429 LEU TRP THR ASP VAL LEU ALA ALA GLN VAL PHE ALA PRO SEQRES 15 A 429 GLN VAL PRO ARG ASP TYR ASP PRO ALA TYR SER ALA ALA SEQRES 16 A 429 PHE GLU ALA GLN LEU ALA GLN HIS ALA GLY GLU LEU ALA SEQRES 17 A 429 ALA VAL VAL VAL GLU PRO VAL VAL GLN GLY ALA GLY GLY SEQRES 18 A 429 MET ARG PHE HIS ASP PRO ARG TYR LEU HIS ASP LEU ARG SEQRES 19 A 429 ASP ILE CYS ARG ARG TYR GLU VAL LEU LEU ILE PHE ASP SEQRES 20 A 429 GLU ILE ALA THR GLY PHE GLY ARG THR GLY ALA LEU PHE SEQRES 21 A 429 ALA ALA ASP HIS ALA GLY VAL SER PRO ASP ILE MET CYS SEQRES 22 A 429 VAL GLY LYS ALA LEU THR GLY GLY TYR LEU SER LEU ALA SEQRES 23 A 429 ALA THR LEU CYS THR ALA ASP VAL ALA HIS THR ILE SER SEQRES 24 A 429 ALA GLY ALA ALA GLY ALA LEU MET HIS GLY PRO THR PHE SEQRES 25 A 429 MET ALA ASN PRO LEU ALA CYS ALA VAL SER VAL ALA SER SEQRES 26 A 429 VAL GLU LEU LEU LEU GLY GLN ASP TRP ARG THR ARG ILE SEQRES 27 A 429 THR GLU LEU ALA ALA GLY LEU THR ALA GLY LEU ASP THR SEQRES 28 A 429 ALA ARG ALA LEU PRO ALA VAL THR ASP VAL ARG VAL CYS SEQRES 29 A 429 GLY ALA ILE GLY VAL ILE GLU CYS ASP ARG PRO VAL ASP SEQRES 30 A 429 LEU ALA VAL ALA THR PRO ALA ALA LEU ASP ARG GLY VAL SEQRES 31 A 429 TRP LEU ARG PRO PHE ARG ASN LEU VAL TYR ALA MET PRO SEQRES 32 A 429 PRO TYR ILE CYS THR PRO ALA GLU ILE THR GLN ILE THR SEQRES 33 A 429 SER ALA MET VAL GLU VAL ALA ARG LEU VAL GLY SER LEU SEQRES 1 B 429 LEU THR PRO GLU GLN ILE ILE ALA VAL ASP GLY ALA HIS SEQRES 2 B 429 LEU TRP HIS PRO TYR SER SER ILE GLY ARG GLU ALA VAL SEQRES 3 B 429 SER PRO VAL VAL ALA VAL ALA ALA HIS GLY ALA TRP LEU SEQRES 4 B 429 THR LEU ILE ARG ASP GLY GLN PRO ILE GLU VAL LEU ASP SEQRES 5 B 429 ALA MET SER SER TRP TRP THR ALA ILE HIS GLY HIS GLY SEQRES 6 B 429 HIS PRO ALA LEU ASP GLN ALA LEU THR THR GLN LEU ARG SEQRES 7 B 429 VAL MET ASN HIS VAL MET PHE GLY GLY LEU THR HIS GLU SEQRES 8 B 429 PRO ALA ALA ARG LEU ALA LYS LEU LEU VAL ASP ILE THR SEQRES 9 B 429 PRO ALA GLY LEU ASP THR VAL PHE PHE SER ASP SER GLY SEQRES 10 B 429 SER VAL SER VAL GLU VAL ALA ALA LYS MET ALA LEU GLN SEQRES 11 B 429 TYR TRP ARG GLY ARG GLY LEU PRO GLY LYS ARG ARG LEU SEQRES 12 B 429 MET THR TRP ARG GLY GLY TYR HIS GLY ASP THR PHE LEU SEQRES 13 B 429 ALA MET SER ILE CYS ASP PRO HIS GLY GLY MET HIS SER SEQRES 14 B 429 LEU TRP THR ASP VAL LEU ALA ALA GLN VAL PHE ALA PRO SEQRES 15 B 429 GLN VAL PRO ARG ASP TYR ASP PRO ALA TYR SER ALA ALA SEQRES 16 B 429 PHE GLU ALA GLN LEU ALA GLN HIS ALA GLY GLU LEU ALA SEQRES 17 B 429 ALA VAL VAL VAL GLU PRO VAL VAL GLN GLY ALA GLY GLY SEQRES 18 B 429 MET ARG PHE HIS ASP PRO ARG TYR LEU HIS ASP LEU ARG SEQRES 19 B 429 ASP ILE CYS ARG ARG TYR GLU VAL LEU LEU ILE PHE ASP SEQRES 20 B 429 GLU ILE ALA THR GLY PHE GLY ARG THR GLY ALA LEU PHE SEQRES 21 B 429 ALA ALA ASP HIS ALA GLY VAL SER PRO ASP ILE MET CYS SEQRES 22 B 429 VAL GLY LYS ALA LEU THR GLY GLY TYR LEU SER LEU ALA SEQRES 23 B 429 ALA THR LEU CYS THR ALA ASP VAL ALA HIS THR ILE SER SEQRES 24 B 429 ALA GLY ALA ALA GLY ALA LEU MET HIS GLY PRO THR PHE SEQRES 25 B 429 MET ALA ASN PRO LEU ALA CYS ALA VAL SER VAL ALA SER SEQRES 26 B 429 VAL GLU LEU LEU LEU GLY GLN ASP TRP ARG THR ARG ILE SEQRES 27 B 429 THR GLU LEU ALA ALA GLY LEU THR ALA GLY LEU ASP THR SEQRES 28 B 429 ALA ARG ALA LEU PRO ALA VAL THR ASP VAL ARG VAL CYS SEQRES 29 B 429 GLY ALA ILE GLY VAL ILE GLU CYS ASP ARG PRO VAL ASP SEQRES 30 B 429 LEU ALA VAL ALA THR PRO ALA ALA LEU ASP ARG GLY VAL SEQRES 31 B 429 TRP LEU ARG PRO PHE ARG ASN LEU VAL TYR ALA MET PRO SEQRES 32 B 429 PRO TYR ILE CYS THR PRO ALA GLU ILE THR GLN ILE THR SEQRES 33 B 429 SER ALA MET VAL GLU VAL ALA ARG LEU VAL GLY SER LEU HET PLP A 501 15 HET 3G8 A 502 23 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HET EDO A 506 4 HET EDO A 507 4 HET PLP B 501 15 HET 3G8 B 502 23 HET CL B 503 1 HET EDO B 504 4 HET EDO B 505 4 HET EDO B 506 4 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM 3G8 7-(DIETHYLAMINO)-3-(THIOPHEN-2-YLCARBONYL)-2H-CHROMEN- HETNAM 2 3G8 2-ONE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 PLP 2(C8 H10 N O6 P) FORMUL 4 3G8 2(C18 H17 N O3 S) FORMUL 5 EDO 8(C2 H6 O2) FORMUL 12 CL CL 1- FORMUL 16 HOH *738(H2 O) HELIX 1 AA1 THR A 9 LEU A 21 1 13 HELIX 2 AA2 MET A 61 THR A 66 1 6 HELIX 3 AA3 HIS A 73 MET A 87 1 15 HELIX 4 AA4 HIS A 97 THR A 111 1 15 HELIX 5 AA5 SER A 123 ARG A 142 1 20 HELIX 6 AA6 THR A 161 ILE A 167 1 7 HELIX 7 AA7 MET A 174 TRP A 178 5 5 HELIX 8 AA8 ASP A 196 GLN A 209 1 14 HELIX 9 AA9 HIS A 210 GLY A 212 5 3 HELIX 10 AB1 PRO A 234 GLU A 248 1 15 HELIX 11 AB2 PHE A 267 ALA A 272 5 6 HELIX 12 AB3 ALA A 299 GLY A 308 1 10 HELIX 13 AB4 ASN A 322 GLY A 338 1 17 HELIX 14 AB5 ASP A 340 ASP A 357 1 18 HELIX 15 AB6 THR A 358 LEU A 362 5 5 HELIX 16 AB7 ASP A 384 ARG A 395 1 12 HELIX 17 AB8 THR A 415 GLY A 434 1 20 HELIX 18 AB9 THR B 9 LEU B 21 1 13 HELIX 19 AC1 MET B 61 THR B 66 1 6 HELIX 20 AC2 HIS B 73 ARG B 85 1 13 HELIX 21 AC3 HIS B 97 THR B 111 1 15 HELIX 22 AC4 SER B 123 ARG B 142 1 20 HELIX 23 AC5 THR B 161 SER B 166 1 6 HELIX 24 AC6 MET B 174 TRP B 178 5 5 HELIX 25 AC7 ASP B 196 ALA B 211 1 16 HELIX 26 AC8 PRO B 234 GLU B 248 1 15 HELIX 27 AC9 PHE B 267 ALA B 272 5 6 HELIX 28 AD1 THR B 298 GLY B 308 1 11 HELIX 29 AD2 ASN B 322 GLY B 338 1 17 HELIX 30 AD3 ASP B 340 ASP B 357 1 18 HELIX 31 AD4 THR B 358 LEU B 362 5 5 HELIX 32 AD5 ASP B 384 ARG B 395 1 12 HELIX 33 AD6 THR B 415 GLY B 434 1 20 SHEET 1 AA1 5 VAL A 397 TRP A 398 0 SHEET 2 AA1 5 GLN A 53 ASP A 59 1 N LEU A 58 O TRP A 398 SHEET 3 AA1 5 TRP A 45 ARG A 50 -1 N LEU A 46 O VAL A 57 SHEET 4 AA1 5 VAL A 36 HIS A 42 -1 N VAL A 39 O THR A 47 SHEET 5 AA1 5 LEU B 95 THR B 96 1 O THR B 96 N ALA A 38 SHEET 1 AA2 5 LEU A 95 THR A 96 0 SHEET 2 AA2 5 VAL B 36 HIS B 42 1 O ALA B 38 N THR A 96 SHEET 3 AA2 5 TRP B 45 ARG B 50 -1 O THR B 47 N VAL B 39 SHEET 4 AA2 5 GLN B 53 ASP B 59 -1 O VAL B 57 N LEU B 46 SHEET 5 AA2 5 VAL B 397 TRP B 398 1 O TRP B 398 N LEU B 58 SHEET 1 AA3 7 LEU A 115 SER A 121 0 SHEET 2 AA3 7 ALA A 293 THR A 298 -1 O THR A 295 N PHE A 119 SHEET 3 AA3 7 ILE A 278 VAL A 281 -1 N MET A 279 O LEU A 296 SHEET 4 AA3 7 LEU A 250 ASP A 254 1 N PHE A 253 O CYS A 280 SHEET 5 AA3 7 LEU A 214 VAL A 219 1 N VAL A 217 O ILE A 252 SHEET 6 AA3 7 ARG A 149 TRP A 153 1 N ARG A 149 O ALA A 215 SHEET 7 AA3 7 VAL A 186 ALA A 188 1 O ALA A 188 N THR A 152 SHEET 1 AA4 2 VAL A 223 GLN A 224 0 SHEET 2 AA4 2 ARG A 230 PHE A 231 -1 O ARG A 230 N GLN A 224 SHEET 1 AA5 3 VAL A 365 VAL A 370 0 SHEET 2 AA5 3 GLY A 375 CYS A 379 -1 O GLU A 378 N THR A 366 SHEET 3 AA5 3 LEU A 405 ALA A 408 -1 O VAL A 406 N ILE A 377 SHEET 1 AA6 7 THR B 117 SER B 121 0 SHEET 2 AA6 7 ALA B 293 CYS B 297 -1 O THR B 295 N PHE B 119 SHEET 3 AA6 7 ILE B 278 VAL B 281 -1 N MET B 279 O LEU B 296 SHEET 4 AA6 7 LEU B 250 ASP B 254 1 N PHE B 253 O CYS B 280 SHEET 5 AA6 7 LEU B 214 VAL B 219 1 N VAL B 217 O ILE B 252 SHEET 6 AA6 7 ARG B 149 TRP B 153 1 N ARG B 149 O ALA B 215 SHEET 7 AA6 7 VAL B 186 ALA B 188 1 O ALA B 188 N THR B 152 SHEET 1 AA7 2 VAL B 223 GLN B 224 0 SHEET 2 AA7 2 ARG B 230 PHE B 231 -1 O ARG B 230 N GLN B 224 SHEET 1 AA8 3 VAL B 365 VAL B 370 0 SHEET 2 AA8 3 GLY B 375 CYS B 379 -1 O GLU B 378 N ASP B 367 SHEET 3 AA8 3 LEU B 405 ALA B 408 -1 O VAL B 406 N ILE B 377 LINK NZ LYS A 283 C4A PLP A 501 1555 1555 1.82 LINK NZ LYS B 283 C4A PLP B 501 1555 1555 1.84 CISPEP 1 THR A 179 ASP A 180 0 3.47 SITE 1 AC1 18 GLY A 124 SER A 125 TYR A 157 HIS A 158 SITE 2 AC1 18 GLY A 159 GLU A 220 ASP A 254 ILE A 256 SITE 3 AC1 18 ALA A 257 LYS A 283 HOH A 708 HOH A 759 SITE 4 AC1 18 HOH A 785 HOH A 788 HOH A 838 PRO B 317 SITE 5 AC1 18 THR B 318 HOH B 695 SITE 1 AC2 12 PRO A 24 TYR A 25 TRP A 64 GLY A 172 SITE 2 AC2 12 ARG A 400 HOH A 793 HOH A 852 HOH A 922 SITE 3 AC2 12 GLY B 93 GLY B 316 PRO B 317 THR B 318 SITE 1 AC3 5 HIS A 271 ALA A 272 HOH A 602 HOH A 616 SITE 2 AC3 5 ARG B 246 SITE 1 AC4 5 PRO A 234 HIS A 271 HOH A 616 HOH A 796 SITE 2 AC4 5 HOH A 933 SITE 1 AC5 7 ARG A 154 PHE A 187 ALA A 188 PRO A 189 SITE 2 AC5 7 HOH A 822 HOH A 897 HOH A 903 SITE 1 AC6 7 SER A 200 ALA A 201 GLU A 204 ASP A 239 SITE 2 AC6 7 ASP A 242 ILE A 243 ARG A 246 SITE 1 AC7 7 ARG A 344 ILE A 413 CYS A 414 THR A 415 SITE 2 AC7 7 PRO A 416 HOH A 782 HOH A 987 SITE 1 AC8 16 PRO A 317 THR A 318 HOH A 696 GLY B 124 SITE 2 AC8 16 SER B 125 TYR B 157 HIS B 158 GLU B 220 SITE 3 AC8 16 ASP B 254 ILE B 256 ALA B 257 LYS B 283 SITE 4 AC8 16 HOH B 681 HOH B 709 HOH B 741 HOH B 742 SITE 1 AC9 9 GLY A 93 GLY A 316 PRO A 317 THR A 318 SITE 2 AC9 9 PRO B 24 TYR B 25 TRP B 64 GLY B 172 SITE 3 AC9 9 HOH B 817 SITE 1 AD1 1 SER B 275 SITE 1 AD2 3 VAL B 222 HIS B 232 PRO B 234 SITE 1 AD3 10 VAL B 108 ASP B 109 THR B 111 PRO B 112 SITE 2 AD3 10 ALA B 113 GLY B 114 LEU B 115 HOH B 717 SITE 3 AD3 10 HOH B 804 HOH B 848 SITE 1 AD4 2 TRP B 45 GLU B 56 CRYST1 63.000 66.000 204.000 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015873 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015152 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004902 0.00000