HEADER FLUORESCENT PROTEIN 20-AUG-14 4W6F TITLE CRYSTAL STRUCTURE OF FULL-LENGTH SPLIT GFP MUTANT K26C DISULFIDE TITLE 2 DIMER, P 32 2 1 SPACE GROUP, FORM 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLUORESCENT PROTEIN D21H/K26C; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS FLUORESCENT PROTEIN, DIMER, DISULFIDE EXPDTA X-RAY DIFFRACTION AUTHOR D.J.LEIBLY,G.S.WALDO,T.O.YEATES REVDAT 6 15-NOV-23 4W6F 1 REMARK REVDAT 5 27-SEP-23 4W6F 1 REMARK REVDAT 4 25-DEC-19 4W6F 1 REMARK REVDAT 3 27-SEP-17 4W6F 1 JRNL REMARK REVDAT 2 27-JAN-16 4W6F 1 JRNL REVDAT 1 18-FEB-15 4W6F 0 JRNL AUTH D.J.LEIBLY,M.A.ARBING,I.PASHKOV,N.DEVORE,G.S.WALDO, JRNL AUTH 2 T.C.TERWILLIGER,T.O.YEATES JRNL TITL A SUITE OF ENGINEERED GFP MOLECULES FOR OLIGOMERIC JRNL TITL 2 SCAFFOLDING. JRNL REF STRUCTURE V. 23 1754 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26278175 JRNL DOI 10.1016/J.STR.2015.07.008 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1555) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 84.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 33533 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3354 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 84.3862 - 7.7896 1.00 1364 152 0.2257 0.2392 REMARK 3 2 7.7896 - 6.1834 1.00 1294 144 0.2177 0.2271 REMARK 3 3 6.1834 - 5.4019 1.00 1289 143 0.1909 0.1939 REMARK 3 4 5.4019 - 4.9081 1.00 1269 141 0.1562 0.1885 REMARK 3 5 4.9081 - 4.5563 1.00 1276 142 0.1518 0.2024 REMARK 3 6 4.5563 - 4.2877 1.00 1261 140 0.1712 0.2139 REMARK 3 7 4.2877 - 4.0730 1.00 1250 139 0.1793 0.2162 REMARK 3 8 4.0730 - 3.8957 1.00 1268 141 0.1936 0.2428 REMARK 3 9 3.8957 - 3.7457 1.00 1254 140 0.2273 0.2331 REMARK 3 10 3.7457 - 3.6165 1.00 1253 139 0.2268 0.2713 REMARK 3 11 3.6165 - 3.5034 1.00 1248 138 0.2351 0.2830 REMARK 3 12 3.5034 - 3.4032 1.00 1262 141 0.2533 0.2796 REMARK 3 13 3.4032 - 3.3136 1.00 1229 136 0.2346 0.2803 REMARK 3 14 3.3136 - 3.2328 1.00 1268 141 0.2217 0.2420 REMARK 3 15 3.2328 - 3.1593 1.00 1231 137 0.2106 0.2770 REMARK 3 16 3.1593 - 3.0921 1.00 1241 138 0.2270 0.2816 REMARK 3 17 3.0921 - 3.0302 1.00 1253 139 0.2128 0.2661 REMARK 3 18 3.0302 - 2.9730 1.00 1237 137 0.2273 0.2536 REMARK 3 19 2.9730 - 2.9199 1.00 1256 140 0.2196 0.2705 REMARK 3 20 2.9199 - 2.8704 1.00 1248 139 0.2153 0.2638 REMARK 3 21 2.8704 - 2.8241 1.00 1223 136 0.2199 0.2608 REMARK 3 22 2.8241 - 2.7807 1.00 1223 135 0.2332 0.2984 REMARK 3 23 2.7807 - 2.7398 1.00 1265 141 0.2267 0.2752 REMARK 3 24 2.7398 - 2.7010 0.99 1217 135 0.2317 0.2765 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3710 REMARK 3 ANGLE : 1.303 5009 REMARK 3 CHIRALITY : 0.050 541 REMARK 3 PLANARITY : 0.006 648 REMARK 3 DIHEDRAL : 15.072 1368 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 2:230) REMARK 3 ORIGIN FOR THE GROUP (A): 60.9709 -12.8116 -30.4520 REMARK 3 T TENSOR REMARK 3 T11: 0.6329 T22: 0.1638 REMARK 3 T33: 0.3382 T12: 0.1003 REMARK 3 T13: 0.0453 T23: 0.0412 REMARK 3 L TENSOR REMARK 3 L11: 1.0028 L22: 3.1878 REMARK 3 L33: 1.8930 L12: -0.0586 REMARK 3 L13: -0.0321 L23: -0.5918 REMARK 3 S TENSOR REMARK 3 S11: -0.2153 S12: -0.1518 S13: -0.0651 REMARK 3 S21: 0.2331 S22: 0.2656 S23: 0.1854 REMARK 3 S31: 0.2169 S32: -0.2089 S33: -0.0100 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 4:230) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4890 19.3764 -29.9579 REMARK 3 T TENSOR REMARK 3 T11: 0.6187 T22: 0.4421 REMARK 3 T33: 0.5485 T12: 0.2327 REMARK 3 T13: 0.1261 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.5972 L22: 3.7355 REMARK 3 L33: 2.4827 L12: -1.0649 REMARK 3 L13: -0.3685 L23: -0.0462 REMARK 3 S TENSOR REMARK 3 S11: -0.1166 S12: 0.0438 S13: -0.4589 REMARK 3 S21: -0.1396 S22: 0.0120 S23: 0.6501 REMARK 3 S31: 0.3655 S32: -0.2894 S33: -0.0180 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4W6F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000203269. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33538 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 84.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.30450 REMARK 200 FOR THE DATA SET : 5.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2B3P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 78.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% 2-PROPANOL, 0.1M IMIDAZOLE PH 8.0, REMARK 280 5MM NICL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.39333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.69667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.69667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 93.39333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 GLY A 191 REMARK 465 PRO A 192 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 LYS B 3 REMARK 465 GLY B 189 REMARK 465 ASP B 190 REMARK 465 GLY B 191 REMARK 465 PRO B 192 REMARK 465 VAL B 193 REMARK 465 ASP B 194 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 189 OD1 ASP A 190 1.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL B 68 N VAL B 68 CA -0.146 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 64 CA - C - O ANGL. DEV. = 13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 3 -168.20 -177.10 REMARK 500 THR B 50 -1.85 79.96 REMARK 500 ASP B 103 -157.52 -153.13 REMARK 500 PHE B 145 118.72 -166.19 REMARK 500 ASP B 216 124.53 -39.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 302 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 21 NE2 REMARK 620 2 IMD B 301 N1 100.3 REMARK 620 3 IMD B 303 N1 98.4 103.1 REMARK 620 4 IMD B 305 N1 89.4 96.5 157.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LEU B 64 and CRO B REMARK 800 66 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CRO B 66 and VAL B REMARK 800 68 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4W69 RELATED DB: PDB REMARK 900 RELATED ID: 4W6B RELATED DB: PDB REMARK 900 RELATED ID: 4W6C RELATED DB: PDB REMARK 900 RELATED ID: 4W6D RELATED DB: PDB REMARK 900 RELATED ID: 4W6A RELATED DB: PDB REMARK 900 RELATED ID: 4W6G RELATED DB: PDB REMARK 900 RELATED ID: 4W6H RELATED DB: PDB REMARK 900 RELATED ID: 4W6I RELATED DB: PDB REMARK 900 RELATED ID: 4W6J RELATED DB: PDB REMARK 900 RELATED ID: 4W6K RELATED DB: PDB REMARK 900 RELATED ID: 4W6L RELATED DB: PDB REMARK 900 RELATED ID: 4W6M RELATED DB: PDB REMARK 900 RELATED ID: 4W6N RELATED DB: PDB REMARK 900 RELATED ID: 4W6O RELATED DB: PDB REMARK 900 RELATED ID: 4W6P RELATED DB: PDB REMARK 900 RELATED ID: 4W6R RELATED DB: PDB REMARK 900 RELATED ID: 4W6S RELATED DB: PDB REMARK 900 RELATED ID: 4W6T RELATED DB: PDB REMARK 900 RELATED ID: 4W6U RELATED DB: PDB REMARK 900 RELATED ID: 4W72 RELATED DB: PDB REMARK 900 RELATED ID: 4W73 RELATED DB: PDB REMARK 900 RELATED ID: 4W74 RELATED DB: PDB REMARK 900 RELATED ID: 4W75 RELATED DB: PDB REMARK 900 RELATED ID: 4W76 RELATED DB: PDB REMARK 900 RELATED ID: 4W77 RELATED DB: PDB REMARK 900 RELATED ID: 4W7A RELATED DB: PDB REMARK 900 RELATED ID: 4W7C RELATED DB: PDB REMARK 900 RELATED ID: 4W7D RELATED DB: PDB REMARK 900 RELATED ID: 4W7E RELATED DB: PDB REMARK 900 RELATED ID: 4W7F RELATED DB: PDB REMARK 900 RELATED ID: 4W7R RELATED DB: PDB REMARK 900 RELATED ID: 4W7X RELATED DB: PDB DBREF 4W6F A 0 230 PDB 4W6F 4W6F 0 230 DBREF 4W6F B 0 230 PDB 4W6F 4W6F 0 230 SEQRES 1 A 229 GLY MET ARG LYS GLY GLU GLU LEU PHE THR GLY VAL VAL SEQRES 2 A 229 PRO ILE LEU ILE GLU LEU ASP GLY HIS VAL ASN GLY HIS SEQRES 3 A 229 CYS PHE PHE VAL ARG GLY GLU GLY GLU GLY ASP ALA THR SEQRES 4 A 229 ILE GLY LYS LEU SER LEU LYS PHE ILE ALA THR THR GLY SEQRES 5 A 229 LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR LEU SEQRES 6 A 229 CRO VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS SEQRES 7 A 229 ARG HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR SEQRES 8 A 229 VAL GLN GLU ARG THR ILE TYR PHE LYS ASP ASP GLY THR SEQRES 9 A 229 TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR SEQRES 10 A 229 LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS SEQRES 11 A 229 GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN SEQRES 12 A 229 PHE ASN SER HIS LYS VAL TYR ILE THR ALA ASP LYS GLN SEQRES 13 A 229 ASN ASN GLY ILE LYS ALA ASN PHE THR ILE ARG HIS ASN SEQRES 14 A 229 VAL GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN SEQRES 15 A 229 GLN ASN THR PRO ILE GLY ASP GLY PRO VAL ASP LEU PRO SEQRES 16 A 229 ASP ASP HIS TYR LEU SER THR GLN THR ILE LEU SER LYS SEQRES 17 A 229 ASP LEU ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU SEQRES 18 A 229 TYR VAL THR ALA ALA GLY ILE THR SEQRES 1 B 229 GLY MET ARG LYS GLY GLU GLU LEU PHE THR GLY VAL VAL SEQRES 2 B 229 PRO ILE LEU ILE GLU LEU ASP GLY HIS VAL ASN GLY HIS SEQRES 3 B 229 CYS PHE PHE VAL ARG GLY GLU GLY GLU GLY ASP ALA THR SEQRES 4 B 229 ILE GLY LYS LEU SER LEU LYS PHE ILE ALA THR THR GLY SEQRES 5 B 229 LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR LEU SEQRES 6 B 229 CRO VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS SEQRES 7 B 229 ARG HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR SEQRES 8 B 229 VAL GLN GLU ARG THR ILE TYR PHE LYS ASP ASP GLY THR SEQRES 9 B 229 TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR SEQRES 10 B 229 LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS SEQRES 11 B 229 GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN SEQRES 12 B 229 PHE ASN SER HIS LYS VAL TYR ILE THR ALA ASP LYS GLN SEQRES 13 B 229 ASN ASN GLY ILE LYS ALA ASN PHE THR ILE ARG HIS ASN SEQRES 14 B 229 VAL GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN SEQRES 15 B 229 GLN ASN THR PRO ILE GLY ASP GLY PRO VAL ASP LEU PRO SEQRES 16 B 229 ASP ASP HIS TYR LEU SER THR GLN THR ILE LEU SER LYS SEQRES 17 B 229 ASP LEU ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU SEQRES 18 B 229 TYR VAL THR ALA ALA GLY ILE THR HET CRO A 66 22 HET CRO B 66 22 HET IMD B 301 5 HET NI B 302 1 HET IMD B 303 5 HET IMD B 304 5 HET IMD B 305 5 HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4- HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CRO YL}ACETIC ACID HETNAM IMD IMIDAZOLE HETNAM NI NICKEL (II) ION HETSYN CRO PEPTIDE DERIVED CHROMOPHORE FORMUL 1 CRO 2(C15 H17 N3 O5) FORMUL 3 IMD 4(C3 H5 N2 1+) FORMUL 4 NI NI 2+ HELIX 1 AA1 GLY A 4 THR A 9 5 6 HELIX 2 AA2 PRO A 56 VAL A 61 1 6 HELIX 3 AA3 VAL A 68 SER A 72 5 5 HELIX 4 AA4 PRO A 75 HIS A 81 5 7 HELIX 5 AA5 ASP A 82 ALA A 87 1 6 HELIX 6 AA6 LYS A 156 ASN A 159 5 4 HELIX 7 AA7 GLY B 4 THR B 9 5 6 HELIX 8 AA8 PRO B 56 VAL B 61 5 6 HELIX 9 AA9 VAL B 68 SER B 72 5 5 HELIX 10 AB1 PRO B 75 HIS B 81 5 7 HELIX 11 AB2 ASP B 82 ALA B 87 1 6 HELIX 12 AB3 LYS B 156 ASN B 159 5 4 SHEET 1 AA112 VAL A 12 VAL A 22 0 SHEET 2 AA112 HIS A 25 ASP A 36 -1 O GLY A 33 N ILE A 14 SHEET 3 AA112 LYS A 41 ALA A 48 -1 O ILE A 47 N ARG A 30 SHEET 4 AA112 HIS A 217 ALA A 227 -1 O MET A 218 N PHE A 46 SHEET 5 AA112 HIS A 199 SER A 208 -1 N SER A 202 O THR A 225 SHEET 6 AA112 HIS A 148 ASP A 155 -1 N ILE A 152 O HIS A 199 SHEET 7 AA112 GLY A 160 ASN A 170 -1 O GLY A 160 N ASP A 155 SHEET 8 AA112 VAL A 176 PRO A 187 -1 O GLN A 177 N HIS A 169 SHEET 9 AA112 TYR A 92 PHE A 100 -1 N GLU A 95 O GLN A 184 SHEET 10 AA112 THR A 105 GLU A 115 -1 O TYR A 106 N ILE A 98 SHEET 11 AA112 THR A 118 ILE A 128 -1 O VAL A 120 N LYS A 113 SHEET 12 AA112 VAL A 12 VAL A 22 1 N HIS A 21 O GLY A 127 SHEET 1 AA212 VAL B 12 VAL B 22 0 SHEET 2 AA212 HIS B 25 ASP B 36 -1 O VAL B 29 N LEU B 18 SHEET 3 AA212 LYS B 41 THR B 49 -1 O ILE B 47 N ARG B 30 SHEET 4 AA212 HIS B 217 ALA B 227 -1 O MET B 218 N PHE B 46 SHEET 5 AA212 HIS B 199 SER B 208 -1 N SER B 202 O THR B 225 SHEET 6 AA212 LYS B 149 ASP B 155 -1 N ILE B 152 O HIS B 199 SHEET 7 AA212 GLY B 160 ASN B 170 -1 O GLY B 160 N ASP B 155 SHEET 8 AA212 VAL B 176 THR B 186 -1 O GLN B 183 N ALA B 163 SHEET 9 AA212 TYR B 92 PHE B 100 -1 N VAL B 93 O THR B 186 SHEET 10 AA212 THR B 105 GLU B 115 -1 O TYR B 106 N ILE B 98 SHEET 11 AA212 THR B 118 ILE B 128 -1 O GLU B 124 N ARG B 109 SHEET 12 AA212 VAL B 12 VAL B 22 1 N GLU B 17 O ILE B 123 SSBOND 1 CYS A 26 CYS B 26 1555 1555 2.04 LINK C LEU A 64 N1 CRO A 66 1555 1555 1.43 LINK C3 CRO A 66 N VAL A 68 1555 1555 1.23 LINK C LEU B 64 N1 CRO B 66 1555 1555 1.34 LINK C3 CRO B 66 N VAL B 68 1555 1555 1.31 LINK NE2 HIS B 21 NI NI B 302 1555 1555 2.53 LINK N1 IMD B 301 NI NI B 302 1555 1555 2.59 LINK NI NI B 302 N1 IMD B 303 1555 1555 2.46 LINK NI NI B 302 N1 IMD B 305 1555 1555 2.10 CISPEP 1 MET A 88 PRO A 89 0 4.85 CISPEP 2 MET B 88 PRO B 89 0 2.92 SITE 1 AC1 6 ASP A 19 GLY A 20 HIS B 21 NI B 302 SITE 2 AC1 6 IMD B 303 IMD B 305 SITE 1 AC2 5 HIS B 21 IMD B 301 IMD B 303 IMD B 304 SITE 2 AC2 5 IMD B 305 SITE 1 AC3 5 ASP B 19 HIS B 21 IMD B 301 NI B 302 SITE 2 AC3 5 IMD B 304 SITE 1 AC4 6 HIS B 21 LEU B 125 LYS B 126 NI B 302 SITE 2 AC4 6 IMD B 303 IMD B 305 SITE 1 AC5 7 ASP A 19 GLU A 124 HIS B 21 LYS B 126 SITE 2 AC5 7 IMD B 301 NI B 302 IMD B 304 SITE 1 AC6 17 ILE B 16 LEU B 44 PHE B 46 LEU B 60 SITE 2 AC6 17 VAL B 61 THR B 62 THR B 63 VAL B 68 SITE 3 AC6 17 GLN B 69 GLN B 94 ARG B 96 ASN B 121 SITE 4 AC6 17 PHE B 145 HIS B 148 THR B 203 LEU B 220 SITE 5 AC6 17 GLU B 222 SITE 1 AC7 15 LEU B 44 VAL B 61 THR B 62 LEU B 64 SITE 2 AC7 15 GLN B 69 CYS B 70 PHE B 71 GLN B 94 SITE 3 AC7 15 ARG B 96 ASN B 121 PHE B 145 HIS B 148 SITE 4 AC7 15 THR B 203 LEU B 220 GLU B 222 CRYST1 121.980 121.980 140.090 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008198 0.004733 0.000000 0.00000 SCALE2 0.000000 0.009466 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007138 0.00000