HEADER CELL ADHESION 21-AUG-14 4W6Y TITLE CO-COMPLEX STRUCTURE OF THE LECTIN DOMAIN OF F18 FIMBRIAL ADHESIN FEDF TITLE 2 WITH INHIBITORY NANOBODY NBFEDF9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: F18 FIMBRIAL ADHESIN AC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 35-185; COMPND 5 SYNONYM: FEDF, LECTIN DOMAIN OF F18 FIMBRIAL ADHESIN FEDF; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NANOBODY NBFEDF9; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI DH5[ALPHA]; SOURCE 3 ORGANISM_TAXID: 668369; SOURCE 4 GENE: FEDF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C43; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PDEST14; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 11 ORGANISM_COMMON: LLAMA; SOURCE 12 ORGANISM_TAXID: 9844; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: WK6; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PDESTR4-R3 KEYWDS ADHESIN, FIMBRIAE, CELL ADHESION, INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR K.MOONENS,M.DE KERPEL,A.CODDENS,E.COX,E.PARDON,H.REMAUT,H.DE GREVE REVDAT 4 10-JAN-24 4W6Y 1 REMARK REVDAT 3 07-MAR-18 4W6Y 1 SOURCE REVDAT 2 24-DEC-14 4W6Y 1 JRNL REVDAT 1 17-DEC-14 4W6Y 0 JRNL AUTH K.MOONENS,M.DE KERPEL,A.CODDENS,E.COX,E.PARDON,H.REMAUT, JRNL AUTH 2 H.DE GREVE JRNL TITL NANOBODY MEDIATED INHIBITION OF ATTACHMENT OF F18 FIMBRIAE JRNL TITL 2 EXPRESSING ESCHERICHIA COLI. JRNL REF PLOS ONE V. 9 14691 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 25502211 JRNL DOI 10.1371/JOURNAL.PONE.0114691 REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 40616 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2157 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.57 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2792 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.5060 REMARK 3 BIN FREE R VALUE SET COUNT : 148 REMARK 3 BIN FREE R VALUE : 0.5590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2089 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 228 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.42000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : 0.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.455 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2295 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2028 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3147 ; 1.968 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4683 ; 0.910 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 308 ; 7.056 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;35.268 ;24.242 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 362 ;13.899 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;12.435 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 340 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2762 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 565 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1181 ; 1.192 ; 1.256 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1180 ; 1.187 ; 1.255 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1503 ; 1.798 ; 1.872 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1504 ; 1.798 ; 1.873 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1114 ; 2.113 ; 1.522 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1098 ; 2.007 ; 1.476 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1620 ; 3.035 ; 2.134 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2613 ; 6.394 ;11.755 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2511 ; 6.107 ;11.004 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 161 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9888 -3.8480 12.9546 REMARK 3 T TENSOR REMARK 3 T11: 0.0271 T22: 0.0164 REMARK 3 T33: 0.0325 T12: -0.0044 REMARK 3 T13: 0.0186 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.4478 L22: 2.4412 REMARK 3 L33: 0.9626 L12: 0.0920 REMARK 3 L13: -0.0084 L23: 0.0627 REMARK 3 S TENSOR REMARK 3 S11: 0.0285 S12: -0.1461 S13: -0.1134 REMARK 3 S21: 0.2033 S22: -0.0523 S23: 0.2308 REMARK 3 S31: 0.0810 S32: 0.0021 S33: 0.0238 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 128 REMARK 3 ORIGIN FOR THE GROUP (A): -19.9504 13.9700 11.3171 REMARK 3 T TENSOR REMARK 3 T11: 0.0629 T22: 0.0042 REMARK 3 T33: 0.0243 T12: 0.0030 REMARK 3 T13: -0.0004 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 4.5718 L22: 0.6449 REMARK 3 L33: 2.1942 L12: 0.0153 REMARK 3 L13: -1.8187 L23: 0.0863 REMARK 3 S TENSOR REMARK 3 S11: 0.1701 S12: -0.0946 S13: 0.2954 REMARK 3 S21: 0.0729 S22: -0.0090 S23: -0.0434 REMARK 3 S31: -0.1004 S32: -0.0072 S33: -0.1611 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4W6Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000203298. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42810 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 46.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 1.83700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4B4P AND 2X1O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M (NH4)2 SO4, 5% PEG-400 AND 100 MM REMARK 280 MES PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.26400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.26400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.28100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.48050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.28100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.48050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.26400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.28100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.48050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.26400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.28100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.48050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -114.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 358 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 335 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 338 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 15 REMARK 465 ALA A 162 REMARK 465 ILE A 163 REMARK 465 ALA A 164 REMARK 465 LYS A 165 REMARK 465 SER B 129 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 465 HIS B 132 REMARK 465 HIS B 133 REMARK 465 HIS B 134 REMARK 465 HIS B 135 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 SO4 A 201 O HOH A 409 1.97 REMARK 500 OH TYR B 59 O2 SO4 B 202 2.08 REMARK 500 CD ARG A 84 O HOH A 422 2.14 REMARK 500 OE1 GLN A 64 O HOH A 301 2.14 REMARK 500 O HOH B 341 O HOH B 376 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 83 CG - SD - CE ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG B 100 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 138 97.02 2.08 REMARK 500 ASN A 149 -153.74 -137.22 REMARK 500 TYR B 27 140.42 -170.29 REMARK 500 SER B 31 65.09 -157.08 REMARK 500 ALA B 92 168.98 179.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4B4P RELATED DB: PDB REMARK 900 4B4P CONTAINS THE APO FORM OF THE LECTIN DOMAIN OF F18 FIMBRIAL REMARK 900 ADHESIN FEDF REMARK 900 RELATED ID: 4W6W RELATED DB: PDB REMARK 900 RELATED ID: 4W6X RELATED DB: PDB DBREF 4W6Y A 15 165 UNP Q47212 Q47212_ECOLX 35 185 DBREF 4W6Y B 1 135 PDB 4W6Y 4W6Y 1 135 SEQRES 1 A 151 ASN SER SER ALA SER SER ALA GLN VAL THR GLY THR LEU SEQRES 2 A 151 LEU GLY THR GLY LYS THR ASN THR THR GLN MET PRO ALA SEQRES 3 A 151 LEU TYR THR TRP GLN HIS GLN ILE TYR ASN VAL ASN PHE SEQRES 4 A 151 ILE PRO SER SER SER GLY THR LEU THR CYS GLN ALA GLY SEQRES 5 A 151 THR ILE LEU VAL TRP LYS ASN GLY ARG GLU THR GLN TYR SEQRES 6 A 151 ALA LEU GLU CYS ARG VAL SER ILE HIS HIS SER SER GLY SEQRES 7 A 151 SER ILE ASN GLU SER GLN TRP GLY GLN GLN SER GLN VAL SEQRES 8 A 151 GLY PHE GLY THR ALA CYS GLY ASN LYS LYS CYS ARG PHE SEQRES 9 A 151 THR GLY PHE GLU ILE SER LEU ARG ILE PRO PRO ASN ALA SEQRES 10 A 151 GLN THR TYR PRO LEU SER SER GLY ASP LEU LYS GLY SER SEQRES 11 A 151 PHE SER LEU THR ASN LYS GLU VAL ASN TRP SER ALA SER SEQRES 12 A 151 ILE TYR VAL PRO ALA ILE ALA LYS SEQRES 1 B 135 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY SER VAL GLN SEQRES 2 B 135 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 135 TYR THR TYR SER SER ASN CYS MET ALA TRP PHE ARG GLN SEQRES 4 B 135 VAL PRO GLY LYS GLU ARG GLU GLY VAL ALA SER ILE ASN SEQRES 5 B 135 THR ARG GLY GLY ILE THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 B 135 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 B 135 VAL SER LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 B 135 ALA THR TYR TYR CYS ALA ALA VAL ARG GLU ALA THR TYR SEQRES 9 B 135 SER ASP ASN ARG CYS SER VAL ARG SER TYR THR TYR ASP SEQRES 10 B 135 TYR TRP GLY GLN GLY THR GLN VAL THR VAL SER SER HIS SEQRES 11 B 135 HIS HIS HIS HIS HIS HET SO4 A 201 5 HET SO4 A 202 5 HET SO4 B 201 5 HET SO4 B 202 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *228(H2 O) HELIX 1 AA1 SER A 17 ALA A 21 5 5 HELIX 2 AA2 GLY A 25 GLY A 29 5 5 HELIX 3 AA3 PRO A 128 GLN A 132 5 5 HELIX 4 AA4 LYS B 87 THR B 91 5 5 HELIX 5 AA5 ARG B 112 TYR B 116 5 5 SHEET 1 AA1 5 GLN A 22 THR A 24 0 SHEET 2 AA1 5 ASN A 153 VAL A 160 -1 O TYR A 159 N GLN A 22 SHEET 3 AA1 5 LEU A 141 THR A 148 -1 N LEU A 141 O VAL A 160 SHEET 4 AA1 5 GLY A 59 ALA A 65 -1 N THR A 62 O SER A 146 SHEET 5 AA1 5 GLN A 102 PHE A 107 -1 O PHE A 107 N GLY A 59 SHEET 1 AA2 5 GLY A 31 ALA A 40 0 SHEET 2 AA2 5 THR A 43 PHE A 53 -1 O GLN A 45 N GLN A 37 SHEET 3 AA2 5 PHE A 118 ARG A 126 -1 O ILE A 123 N HIS A 46 SHEET 4 AA2 5 GLU A 82 HIS A 89 -1 N HIS A 88 O GLY A 120 SHEET 5 AA2 5 ILE A 94 GLU A 96 -1 O ASN A 95 N ILE A 87 SHEET 1 AA3 3 ARG A 75 ALA A 80 0 SHEET 2 AA3 3 THR A 67 LYS A 72 -1 N VAL A 70 O THR A 77 SHEET 3 AA3 3 LEU A 136 SER A 137 -1 O SER A 137 N LEU A 69 SHEET 1 AA4 2 ALA A 110 CYS A 111 0 SHEET 2 AA4 2 LYS A 114 LYS A 115 -1 O LYS A 114 N CYS A 111 SHEET 1 AA5 4 GLN B 3 SER B 7 0 SHEET 2 AA5 4 LEU B 18 SER B 25 -1 O ALA B 23 N GLN B 5 SHEET 3 AA5 4 THR B 78 MET B 83 -1 O MET B 83 N LEU B 18 SHEET 4 AA5 4 PHE B 68 ASP B 73 -1 N THR B 69 O GLN B 82 SHEET 1 AA6 6 GLY B 10 GLN B 13 0 SHEET 2 AA6 6 THR B 123 SER B 128 1 O THR B 126 N VAL B 12 SHEET 3 AA6 6 ALA B 92 ALA B 98 -1 N TYR B 94 O THR B 123 SHEET 4 AA6 6 CYS B 33 GLN B 39 -1 N PHE B 37 O TYR B 95 SHEET 5 AA6 6 GLU B 46 ASN B 52 -1 O VAL B 48 N TRP B 36 SHEET 6 AA6 6 ILE B 57 TYR B 60 -1 O TYR B 59 N SER B 50 SHEET 1 AA7 4 GLY B 10 GLN B 13 0 SHEET 2 AA7 4 THR B 123 SER B 128 1 O THR B 126 N VAL B 12 SHEET 3 AA7 4 ALA B 92 ALA B 98 -1 N TYR B 94 O THR B 123 SHEET 4 AA7 4 TYR B 118 TRP B 119 -1 O TYR B 118 N ALA B 98 SSBOND 1 CYS A 63 CYS A 83 1555 1555 2.11 SSBOND 2 CYS A 111 CYS A 116 1555 1555 2.10 SSBOND 3 CYS B 22 CYS B 96 1555 1555 1.96 SSBOND 4 CYS B 33 CYS B 109 1555 1555 1.98 SITE 1 AC1 7 TYR A 79 ALA A 80 HOH A 347 HOH A 390 SITE 2 AC1 7 HOH A 409 HOH A 416 ARG B 54 SITE 1 AC2 6 SER A 58 THR A 62 SER A 146 HOH A 309 SITE 2 AC2 6 HOH A 339 HOH A 378 SITE 1 AC3 4 ARG B 72 ASP B 73 ASN B 74 ALA B 75 SITE 1 AC4 7 GLN A 45 TYR B 59 ARG B 108 VAL B 111 SITE 2 AC4 7 ARG B 112 HOH B 339 HOH B 363 CRYST1 52.562 102.961 114.528 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019025 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009712 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008731 0.00000