HEADER HYDROLASE 21-AUG-14 4W79 TITLE CRYSTAL STRUCTURE OF HUMAN PROTEIN N-TERMINAL GLUTAMINE AMIDOHYDROLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN N-TERMINAL GLUTAMINE AMIDOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN NH2-TERMINAL GLUTAMINE DEAMIDASE,NT(Q)-AMIDASE,WDYHV COMPND 5 MOTIF-CONTAINING PROTEIN 1; COMPND 6 EC: 3.5.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WDYHV1, C8ORF32, NTAQ1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834 P(RARE2); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVP16 KEYWDS PROTEIN STRUCTURE INITIATIVE, PSI-2, CENTER FOR EUKARYOTIC STRUCTURAL KEYWDS 2 GENOMICS, CESG, STRUCTURAL GENOMICS, GLUTAMINE AMINOHYDROLASE, KEYWDS 3 HNTAQ1, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.BITTO,C.A.BINGMAN,J.G.MCCOY,G.E.WESENBERG,G.N.PHILLIPS JR.,CENTER AUTHOR 2 FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 6 27-DEC-23 4W79 1 REMARK REVDAT 5 25-DEC-19 4W79 1 REMARK REVDAT 4 22-NOV-17 4W79 1 REMARK REVDAT 3 06-SEP-17 4W79 1 SOURCE KEYWDS REMARK REVDAT 2 10-DEC-14 4W79 1 JRNL REVDAT 1 17-SEP-14 4W79 0 JRNL AUTH M.S.PARK,E.BITTO,K.R.KIM,C.A.BINGMAN,M.D.MILLER,H.J.KIM, JRNL AUTH 2 B.W.HAN,G.N.PHILLIPS JRNL TITL CRYSTAL STRUCTURE OF HUMAN PROTEIN N-TERMINAL GLUTAMINE JRNL TITL 2 AMIDOHYDROLASE, AN INITIAL COMPONENT OF THE N-END RULE JRNL TITL 3 PATHWAY. JRNL REF PLOS ONE V. 9 11142 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 25356641 JRNL DOI 10.1371/JOURNAL.PONE.0111142 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 38673 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2045 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2562 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 139 REMARK 3 BIN FREE R VALUE : 0.2220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1632 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 75 REMARK 3 SOLVENT ATOMS : 332 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : -0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.057 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.060 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.103 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1786 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1577 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2421 ; 1.913 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3660 ; 0.847 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 210 ; 8.007 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 86 ;30.089 ;23.953 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 253 ;13.293 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;15.171 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 244 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1983 ; 0.016 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 412 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 826 ; 2.594 ; 1.388 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 825 ; 2.559 ; 1.385 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1036 ; 3.667 ; 2.071 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4W79 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000203326. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97942 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40943 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.54300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION (10 MG/ML SE-MET REMARK 280 PROTEIN, 0.050 M SODIUM CHLORIDE, 0.003 M SODIUM AZIDE, 0.0003 M REMARK 280 TCEP, BIS-TRIS PH 7.0) MIXED IN A 1:1 RATIO WITH THE WELL REMARK 280 SOLUTION (1% ETHYLENE GLYCOL, 1.8 M AMMONIUM SULFATE, 0.10 M MES REMARK 280 PH 6.0). CRYOPROTECTED IN FOUR STAGES WITH WELL SOLUTION USING 0 REMARK 280 TO 25 % ETHYLENE GLYCOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.16100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.83000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.01950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.83000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.16100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.01950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 610 O HOH A 641 1.90 REMARK 500 O HOH A 729 O HOH A 730 1.92 REMARK 500 O HOH A 428 O HOH A 494 1.93 REMARK 500 O HOH A 656 O HOH A 668 1.95 REMARK 500 O HOH A 668 O HOH A 707 2.00 REMARK 500 O HOH A 492 O HOH A 497 2.03 REMARK 500 O HOH A 410 O HOH A 505 2.09 REMARK 500 O HOH A 674 O HOH A 679 2.17 REMARK 500 O HOH A 478 O HOH A 531 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 441 O HOH A 519 3655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 136 CB - CG - OD1 ANGL. DEV. = 8.2 DEGREES REMARK 500 ARG A 199 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 10 33.17 -99.39 REMARK 500 ASP A 73 53.08 -140.50 REMARK 500 GLN A 92 132.52 -174.21 REMARK 500 LYS A 117 170.40 67.43 REMARK 500 MSE A 173 114.00 -161.79 REMARK 500 ASN A 174 24.44 -142.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 7 ALA A 8 -140.92 REMARK 500 ALA A 8 VAL A 9 -146.04 REMARK 500 GLY A 91 GLN A 92 -145.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 70 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 713 DISTANCE = 6.74 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO3 A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO3 A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO3 A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 315 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3C9Q RELATED DB: PDB REMARK 900 STRUCTURE REDEFINED FOLLOWING A SUGGESTION FROM A REVIEWER DURING REMARK 900 MANUSCRIPT PEER REVIEW. REMARK 900 RELATED ID: CESG-GO.39772 RELATED DB: TARGETTRACK DBREF 4W79 A 2 202 UNP Q96HA8 NTAQ1_HUMAN 2 202 SEQADV 4W79 SER A 1 UNP Q96HA8 EXPRESSION TAG SEQADV 4W79 VAL A 32 UNP Q96HA8 ILE 32 VARIANT SEQADV 4W79 SER A 93 UNP Q96HA8 ASN 93 VARIANT SEQADV 4W79 ILE A 116 UNP Q96HA8 PHE 116 VARIANT SEQADV 4W79 CYS A 134 UNP Q96HA8 ARG 134 VARIANT SEQRES 1 A 202 SER GLU GLY ASN GLY PRO ALA ALA VAL HIS TYR GLN PRO SEQRES 2 A 202 ALA SER PRO PRO ARG ASP ALA CYS VAL TYR SER SER CYS SEQRES 3 A 202 TYR CYS GLU GLU ASN VAL TRP LYS LEU CYS GLU TYR ILE SEQRES 4 A 202 LYS ASN HIS ASP GLN TYR PRO LEU GLU GLU CYS TYR ALA SEQRES 5 A 202 VAL PHE ILE SER ASN GLU ARG LYS MSE ILE PRO ILE TRP SEQRES 6 A 202 LYS GLN GLN ALA ARG PRO GLY ASP GLY PRO VAL ILE TRP SEQRES 7 A 202 ASP TYR HIS VAL VAL LEU LEU HIS VAL SER SER GLY GLY SEQRES 8 A 202 GLN SER PHE ILE TYR ASP LEU ASP THR VAL LEU PRO PHE SEQRES 9 A 202 PRO CYS LEU PHE ASP THR TYR VAL GLU ASP ALA ILE LYS SEQRES 10 A 202 SER ASP ASP ASP ILE HIS PRO GLN PHE ARG ARG LYS PHE SEQRES 11 A 202 ARG VAL ILE CYS ALA ASP SER TYR LEU LYS ASN PHE ALA SEQRES 12 A 202 SER ASP ARG SER HIS MSE LYS ASP SER SER GLY ASN TRP SEQRES 13 A 202 ARG GLU PRO PRO PRO PRO TYR PRO CYS ILE GLU THR GLY SEQRES 14 A 202 ASP SER LYS MSE ASN LEU ASN ASP PHE ILE SER MSE ASP SEQRES 15 A 202 PRO LYS VAL GLY TRP GLY ALA VAL TYR THR LEU SER GLU SEQRES 16 A 202 PHE THR HIS ARG PHE GLY SER MODRES 4W79 MSE A 61 MET MODIFIED RESIDUE MODRES 4W79 MSE A 149 MET MODIFIED RESIDUE MODRES 4W79 MSE A 173 MET MODIFIED RESIDUE MODRES 4W79 MSE A 181 MET MODIFIED RESIDUE HET MSE A 61 16 HET MSE A 149 8 HET MSE A 173 8 HET MSE A 181 8 HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET SO4 A 306 5 HET SO4 A 307 5 HET SO4 A 308 5 HET SO4 A 309 5 HET SO4 A 310 5 HET SO4 A 311 5 HET CO3 A 312 4 HET CO3 A 313 4 HET CO3 A 314 4 HET PG4 A 315 13 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM CO3 CARBONATE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 EDO 5(C2 H6 O2) FORMUL 7 SO4 6(O4 S 2-) FORMUL 13 CO3 3(C O3 2-) FORMUL 16 PG4 C8 H18 O5 FORMUL 17 HOH *332(H2 O) HELIX 1 AA1 PRO A 17 CYS A 21 5 5 HELIX 2 AA2 TYR A 27 HIS A 42 1 16 HELIX 3 AA3 PRO A 46 GLU A 48 5 3 HELIX 4 AA4 PHE A 108 ALA A 115 1 8 HELIX 5 AA5 HIS A 123 ARG A 127 5 5 HELIX 6 AA6 ALA A 135 PHE A 142 1 8 HELIX 7 AA7 ARG A 146 LYS A 150 5 5 HELIX 8 AA8 LEU A 175 SER A 180 1 6 HELIX 9 AA9 LEU A 193 GLY A 201 1 9 SHEET 1 AA1 6 CYS A 106 LEU A 107 0 SHEET 2 AA1 6 GLN A 92 TYR A 96 -1 N ILE A 95 O CYS A 106 SHEET 3 AA1 6 HIS A 81 SER A 88 -1 N LEU A 84 O TYR A 96 SHEET 4 AA1 6 CYS A 50 SER A 56 -1 N ILE A 55 O HIS A 81 SHEET 5 AA1 6 LYS A 129 CYS A 134 -1 O ARG A 131 N PHE A 54 SHEET 6 AA1 6 ALA A 189 THR A 192 -1 O TYR A 191 N PHE A 130 SHEET 1 AA2 2 ILE A 62 ILE A 64 0 SHEET 2 AA2 2 VAL A 76 TRP A 78 -1 O TRP A 78 N ILE A 62 LINK C LYS A 60 N AMSE A 61 1555 1555 1.34 LINK C LYS A 60 N BMSE A 61 1555 1555 1.34 LINK C AMSE A 61 N ILE A 62 1555 1555 1.33 LINK C BMSE A 61 N ILE A 62 1555 1555 1.33 LINK C HIS A 148 N MSE A 149 1555 1555 1.32 LINK C MSE A 149 N LYS A 150 1555 1555 1.34 LINK C LYS A 172 N MSE A 173 1555 1555 1.33 LINK C MSE A 173 N ASN A 174 1555 1555 1.33 LINK C SER A 180 N MSE A 181 1555 1555 1.34 LINK C MSE A 181 N ASP A 182 1555 1555 1.33 CISPEP 1 GLY A 5 PRO A 6 0 10.52 CISPEP 2 GLY A 74 PRO A 75 0 3.55 CISPEP 3 PHE A 104 PRO A 105 0 1.79 SITE 1 AC1 4 LYS A 60 ASP A 79 ASN A 176 HOH A 676 SITE 1 AC2 8 PRO A 16 CYS A 21 VAL A 22 LYS A 34 SITE 2 AC2 8 TYR A 38 HOH A 440 HOH A 457 HOH A 554 SITE 1 AC3 6 TRP A 33 LYS A 34 PRO A 164 HOH A 406 SITE 2 AC3 6 HOH A 415 HOH A 425 SITE 1 AC4 7 LYS A 40 ASN A 41 ARG A 146 TRP A 156 SITE 2 AC4 7 PRO A 160 CYS A 165 SO4 A 307 SITE 1 AC5 5 HIS A 10 TRP A 65 GLY A 74 LYS A 117 SITE 2 AC5 5 HOH A 412 SITE 1 AC6 8 ARG A 18 PRO A 103 PHE A 104 HOH A 421 SITE 2 AC6 8 HOH A 443 HOH A 565 HOH A 623 HOH A 668 SITE 1 AC7 10 LYS A 40 ARG A 146 TYR A 163 PRO A 164 SITE 2 AC7 10 CYS A 165 EDO A 304 HOH A 403 HOH A 416 SITE 3 AC7 10 HOH A 423 HOH A 455 SITE 1 AC8 10 TRP A 65 LYS A 66 GLY A 72 ASP A 73 SITE 2 AC8 10 GLY A 74 HOH A 413 HOH A 452 HOH A 574 SITE 3 AC8 10 HOH A 597 HOH A 607 SITE 1 AC9 8 LYS A 117 SER A 118 HOH A 412 HOH A 417 SITE 2 AC9 8 HOH A 438 HOH A 499 HOH A 582 HOH A 662 SITE 1 AD1 5 ARG A 127 HOH A 402 HOH A 620 HOH A 630 SITE 2 AD1 5 HOH A 648 SITE 1 AD2 4 ALA A 7 ALA A 8 VAL A 9 HIS A 10 SITE 1 AD3 5 TYR A 51 VAL A 132 ALA A 189 ARG A 199 SITE 2 AD3 5 HOH A 429 SITE 1 AD4 3 HIS A 42 ASP A 43 GLN A 44 SITE 1 AD5 6 TYR A 51 ARG A 199 HOH A 433 HOH A 470 SITE 2 AD5 6 HOH A 614 HOH A 669 SITE 1 AD6 12 CYS A 134 ASP A 136 SER A 137 GLU A 158 SITE 2 AD6 12 GLY A 186 TRP A 187 GLY A 188 HOH A 420 SITE 3 AD6 12 HOH A 498 HOH A 517 HOH A 575 HOH A 706 CRYST1 34.322 64.039 113.660 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029136 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015615 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008798 0.00000