HEADER HYDROLASE 22-AUG-14 4W8B TITLE CRYSTAL STRUCTURE OF XEG5B, A GH5 XYLOGLUCAN-SPECIFIC BETA-1,4- TITLE 2 GLUCANASE FROM RUMINAL METAGENOMIC LIBRARY, IN COMPLEX WITH XXLG COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXO-XYLOGLUCANASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCULTURED BACTERIUM; SOURCE 3 ORGANISM_TAXID: 77133; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSIDE HYDROLASE, CELL WALL DEGRADING ENZYME, GH5 FAMILY, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.R.SANTOS,R.L.CORDEIRO,D.W.S.WONG,M.T.MURAKAMI REVDAT 7 27-DEC-23 4W8B 1 HETSYN LINK REVDAT 6 29-JUL-20 4W8B 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 01-JAN-20 4W8B 1 REMARK REVDAT 4 17-APR-19 4W8B 1 REMARK REVDAT 3 22-NOV-17 4W8B 1 COMPND SOURCE KEYWDS JRNL REVDAT 3 2 1 REMARK LINK SITE ATOM REVDAT 2 25-MAR-15 4W8B 1 JRNL REVDAT 1 11-MAR-15 4W8B 0 JRNL AUTH C.R.DOS SANTOS,R.L.CORDEIRO,D.W.WONG,M.T.MURAKAMI JRNL TITL STRUCTURAL BASIS FOR XYLOGLUCAN SPECIFICITY AND JRNL TITL 2 ALPHA-D-XYLP(1 6)-D-GLCP RECOGNITION AT THE -1 SUBSITE JRNL TITL 3 WITHIN THE GH5 FAMILY. JRNL REF BIOCHEMISTRY V. 54 1930 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25714929 JRNL DOI 10.1021/ACS.BIOCHEM.5B00011 REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 157480 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.104 REMARK 3 R VALUE (WORKING SET) : 0.103 REMARK 3 FREE R VALUE : 0.122 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8301 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9206 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.1590 REMARK 3 BIN FREE R VALUE SET COUNT : 496 REMARK 3 BIN FREE R VALUE : 0.1810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3012 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 162 REMARK 3 SOLVENT ATOMS : 678 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.28000 REMARK 3 B22 (A**2) : -1.28000 REMARK 3 B33 (A**2) : 2.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.005 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.005 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.011 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.502 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.984 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.981 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3292 ; 0.025 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2913 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4501 ; 2.192 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6707 ; 1.541 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 385 ; 6.535 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 161 ;37.677 ;25.217 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 480 ;11.349 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;18.619 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 523 ; 0.166 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3667 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 776 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1543 ; 1.277 ; 0.649 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1542 ; 1.274 ; 0.649 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1927 ; 1.600 ; 0.982 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6177 ; 7.752 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 102 ;45.427 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6669 ;13.746 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4W8B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000203323. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 165780 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.23000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 10.14 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM CITRATE, REMARK 280 GLYCEROL, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.66800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.33600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.50200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.17000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 9.83400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 209 O HOH A 701 1.76 REMARK 500 O HOH A 772 O HOH A 784 1.94 REMARK 500 O HOH A 1316 O HOH A 1323 1.96 REMARK 500 O HOH A 818 O HOH A 904 1.98 REMARK 500 O2 XYS C 4 O HOH A 1374 1.99 REMARK 500 O HOH A 1015 O HOH A 1164 2.08 REMARK 500 O HOH A 926 O HOH A 948 2.16 REMARK 500 ND2 ASN A 205 O HOH A 702 2.18 REMARK 500 O HOH A 1205 O HOH A 1350 2.18 REMARK 500 CG LYS A 506 O HOH A 1219 2.18 REMARK 500 O HOH A 709 O HOH A 1369 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 258 CB GLU A 258 CG -0.171 REMARK 500 LYS A 280 CD LYS A 280 CE 0.152 REMARK 500 GLU A 284 CG GLU A 284 CD -0.113 REMARK 500 TYR A 298 CE1 TYR A 298 CZ -0.102 REMARK 500 GLU A 307 CD GLU A 307 OE2 0.110 REMARK 500 GLY A 328 N GLY A 328 CA 0.094 REMARK 500 ARG A 333 CA ARG A 333 CB 0.174 REMARK 500 GLU A 358 CD GLU A 358 OE1 0.088 REMARK 500 SER A 382 CB SER A 382 OG -0.079 REMARK 500 ALA A 392 N ALA A 392 CA 0.140 REMARK 500 GLU A 406 CB GLU A 406 CG -0.187 REMARK 500 SER A 440 CB SER A 440 OG -0.104 REMARK 500 SER A 481 CB SER A 481 OG 0.110 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 166 CB - CG - OD1 ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG A 193 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 209 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 209 CB - CG - OD2 ANGL. DEV. = -8.2 DEGREES REMARK 500 GLU A 258 CG - CD - OE2 ANGL. DEV. = -12.3 DEGREES REMARK 500 LYS A 280 CD - CE - NZ ANGL. DEV. = 15.1 DEGREES REMARK 500 ASP A 281 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 TYR A 298 CD1 - CE1 - CZ ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 362 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 TYR A 388 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 157 -91.81 -120.61 REMARK 500 TRP A 198 -45.81 -130.56 REMARK 500 HIS A 235 -157.94 -89.29 REMARK 500 ASN A 292 -88.43 -119.78 REMARK 500 MET A 351 62.77 -119.70 REMARK 500 SER A 396 -151.71 -137.86 REMARK 500 GLU A 405 -158.02 -88.49 REMARK 500 TYR A 420 -62.82 -129.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1171 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A1230 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A1241 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A1258 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A1288 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1324 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A1366 DISTANCE = 5.82 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4W84 RELATED DB: PDB REMARK 900 RELATED ID: 4W85 RELATED DB: PDB REMARK 900 RELATED ID: 4W86 RELATED DB: PDB REMARK 900 RELATED ID: 4W87 RELATED DB: PDB REMARK 900 RELATED ID: 4W88 RELATED DB: PDB REMARK 900 RELATED ID: 4W89 RELATED DB: PDB REMARK 900 RELATED ID: 4W8A RELATED DB: PDB DBREF 4W8B A 139 516 UNP D2XML9 D2XML9_9BACT 139 516 SEQADV 4W8B LEU A 517 UNP D2XML9 EXPRESSION TAG SEQADV 4W8B GLU A 518 UNP D2XML9 EXPRESSION TAG SEQADV 4W8B HIS A 519 UNP D2XML9 EXPRESSION TAG SEQADV 4W8B HIS A 520 UNP D2XML9 EXPRESSION TAG SEQADV 4W8B HIS A 521 UNP D2XML9 EXPRESSION TAG SEQADV 4W8B HIS A 522 UNP D2XML9 EXPRESSION TAG SEQADV 4W8B HIS A 523 UNP D2XML9 EXPRESSION TAG SEQADV 4W8B HIS A 524 UNP D2XML9 EXPRESSION TAG SEQRES 1 A 386 LYS ASP ALA GLN ALA ILE ALA LYS ASP MET TYR PRO GLY SEQRES 2 A 386 TRP ASN LEU GLY ASN THR LEU GLU ALA THR GLY SER GLY SEQRES 3 A 386 LEU ASP ALA GLU THR SER TRP GLN PRO THR LEU THR THR SEQRES 4 A 386 GLN GLN ILE ILE ASP ALA VAL LYS ALA ALA GLY PHE LYS SEQRES 5 A 386 SER VAL ARG ILE PRO CYS SER TRP ASP ILE HIS SER ASP SEQRES 6 A 386 SER ASN GLY GLU ILE ASP ALA GLN TRP MET ALA ARG VAL SEQRES 7 A 386 LYS GLN VAL VAL ASN TYR CYS ILE ASN ASP GLY ILE TYR SEQRES 8 A 386 VAL VAL LEU ASN ASP HIS TRP ASP ASN GLY TRP ILE GLU SEQRES 9 A 386 VAL LEU GLY PHE SER LYS SER SER SER SER TYR GLN ALA SEQRES 10 A 386 VAL ASP GLU ALA THR ILE THR SER LYS ILE THR ARG LEU SEQRES 11 A 386 LYS ASP LEU TRP THR GLN ILE ALA ASN GLU PHE LYS ASP SEQRES 12 A 386 TYR ASP GLU HIS LEU LEU PHE ALA GLY LEU ASN GLU PRO SEQRES 13 A 386 PHE GLN GLU TYR SER LEU PHE SER GLY HIS HIS GLU GLU SEQRES 14 A 386 LEU THR PRO ILE LEU CYS ARG TYR ASN GLN ALA PHE VAL SEQRES 15 A 386 GLU ALA VAL ARG ALA THR GLY GLY ASN ASN ALA GLN ARG SEQRES 16 A 386 THR LEU VAL VAL GLN GLY PRO SER THR ASN ILE ASN SER SEQRES 17 A 386 SER VAL ASN TYR MET THR ALA ASP LYS LEU PRO GLU THR SEQRES 18 A 386 ALA GLY ARG LEU MET VAL GLU VAL HIS TYR TYR ASP PRO SEQRES 19 A 386 GLY GLN PHE CYS GLY THR PHE ASP ALA SER GLY ASP ASN SEQRES 20 A 386 ALA PHE TYR PHE TRP GLY ALA ALA ASN HIS SER THR ASP SEQRES 21 A 386 HIS ASN ALA THR TYR GLY GLU GLU ALA TYR MET LEU SER SEQRES 22 A 386 GLN PHE GLY LEU LEU LYS THR ALA TYR THR SER LEU GLY SEQRES 23 A 386 TYR PRO VAL ILE ILE GLY GLU TYR ALA ALA LEU GLN ARG SEQRES 24 A 386 THR ILE SER GLY ASP GLN ASN LYS HIS ASN ALA SER VAL SEQRES 25 A 386 LYS TYR PHE TYR GLN CYS VAL ASN GLU TYR ALA THR ASN SEQRES 26 A 386 ASN GLY ILE ILE ALA PHE ALA TRP ASP THR ASN ASP THR SEQRES 27 A 386 ASN GLY LEU ASN SER GLU GLY GLY SER SER THR ILE ILE SEQRES 28 A 386 ASP ARG ALA ASN SER ALA VAL VAL GLY ASN ASN ALA MET SEQRES 29 A 386 GLU GLY VAL LYS ALA GLY VAL ALA ALA GLY LYS TRP PRO SEQRES 30 A 386 PHE LEU GLU HIS HIS HIS HIS HIS HIS HET GLC B 1 14 HET BGC B 2 11 HET BGC B 3 11 HET BGC B 4 11 HET XYS B 5 9 HET XYS B 6 9 HET XYS B 7 9 HET GAL B 8 11 HET BGC C 1 12 HET BGC C 2 11 HET BGC C 3 11 HET XYS C 4 9 HET XYS C 5 9 HET SO4 A 609 5 HET SO4 A 610 5 HET SO4 A 611 5 HET GOL A 612 6 HET GOL A 613 6 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM XYS ALPHA-D-XYLOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN XYS ALPHA-D-XYLOSE; D-XYLOSE; XYLOSE; XYLOPYRANOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GLC C6 H12 O6 FORMUL 2 BGC 6(C6 H12 O6) FORMUL 2 XYS 5(C5 H10 O5) FORMUL 2 GAL C6 H12 O6 FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 HOH *678(H2 O) HELIX 1 AA1 ASP A 140 LYS A 146 1 7 HELIX 2 AA2 GLY A 164 SER A 170 5 7 HELIX 3 AA3 THR A 177 GLY A 188 1 12 HELIX 4 AA4 TRP A 198 SER A 202 5 5 HELIX 5 AA5 ASP A 209 ASP A 226 1 18 HELIX 6 AA6 TRP A 236 TRP A 240 5 5 HELIX 7 AA7 ASP A 257 PHE A 279 1 23 HELIX 8 AA8 GLU A 297 SER A 302 1 6 HELIX 9 AA9 HIS A 304 THR A 326 1 23 HELIX 10 AB1 GLY A 328 ARG A 333 1 6 HELIX 11 AB2 PRO A 340 THR A 342 5 3 HELIX 12 AB3 ASN A 343 MET A 351 1 9 HELIX 13 AB4 THR A 352 LEU A 356 5 5 HELIX 14 AB5 PRO A 372 GLY A 377 1 6 HELIX 15 AB6 SER A 382 ALA A 386 5 5 HELIX 16 AB7 GLY A 391 HIS A 395 5 5 HELIX 17 AB8 GLU A 405 TYR A 420 1 16 HELIX 18 AB9 THR A 421 GLY A 424 5 4 HELIX 19 AC1 ASP A 442 ASN A 464 1 23 HELIX 20 AC2 THR A 476 SER A 481 5 6 HELIX 21 AC3 GLY A 498 GLY A 512 1 15 SHEET 1 AA1 9 GLY A 151 ASN A 153 0 SHEET 2 AA1 9 SER A 191 ILE A 194 1 O ARG A 193 N TRP A 152 SHEET 3 AA1 9 TYR A 229 ASN A 233 1 O VAL A 231 N ILE A 194 SHEET 4 AA1 9 LEU A 286 ALA A 289 1 O LEU A 287 N VAL A 230 SHEET 5 AA1 9 LEU A 335 GLN A 338 1 O VAL A 336 N PHE A 288 SHEET 6 AA1 9 LEU A 363 TYR A 369 1 O GLU A 366 N VAL A 337 SHEET 7 AA1 9 VAL A 427 TYR A 432 1 O GLU A 431 N TYR A 369 SHEET 8 AA1 9 ILE A 466 ALA A 470 1 O PHE A 469 N ILE A 429 SHEET 9 AA1 9 GLY A 151 ASN A 153 1 N GLY A 151 O ALA A 468 SHEET 1 AA2 2 ILE A 489 ASP A 490 0 SHEET 2 AA2 2 ALA A 495 VAL A 496 -1 O ALA A 495 N ASP A 490 LINK O4 GLC B 1 C1 BGC B 2 1555 1555 1.34 LINK O4 BGC B 2 C1 BGC B 3 1555 1555 1.39 LINK O6 BGC B 2 C1 XYS B 7 1555 1555 1.37 LINK O4 BGC B 3 C1 BGC B 4 1555 1555 1.38 LINK O6 BGC B 3 C1 XYS B 6 1555 1555 1.43 LINK O6 BGC B 4 C1 XYS B 5 1555 1555 1.40 LINK O2 XYS B 7 C1 GAL B 8 1555 1555 1.49 LINK O4 BGC C 1 C1 BGC C 2 1555 1555 1.39 LINK O4 BGC C 2 C1 BGC C 3 1555 1555 1.38 LINK O6 BGC C 2 C1 XYS C 5 1555 1555 1.42 LINK O6 BGC C 3 C1 XYS C 4 1555 1555 1.36 CISPEP 1 TYR A 149 PRO A 150 0 -4.59 CISPEP 2 ASP A 371 PRO A 372 0 -5.91 CRYST1 120.632 120.632 59.004 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008290 0.004786 0.000000 0.00000 SCALE2 0.000000 0.009572 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016948 0.00000