HEADER HYDROLASE 25-AUG-14 4W8L TITLE STRUCTURE OF GH10 FROM PAENIBACILLUS BARCINONENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-1,4-BETA-XYLANASE C; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 367-718; COMPND 5 SYNONYM: XYLANASE C,1,4-BETA-D-XYLAN XYLANOHYDROLASE C; COMPND 6 EC: 3.2.1.8; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAENIBACILLUS BARCINONENSIS; SOURCE 3 ORGANISM_TAXID: 198119; SOURCE 4 GENE: XYNC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BLR; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GLYCOSIDE HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SAINZ-POLO,J.SANZ-APARICIO REVDAT 3 10-JAN-24 4W8L 1 LINK REVDAT 2 22-JUL-15 4W8L 1 JRNL REVDAT 1 03-JUN-15 4W8L 0 JRNL AUTH M.A.SAINZ-POLO,B.GONZALEZ,M.MENENDEZ,F.I.PASTOR, JRNL AUTH 2 J.SANZ-APARICIO JRNL TITL EXPLORING MULTIMODULARITY IN PLANT CELL WALL DECONSTRUCTION: JRNL TITL 2 STRUCTURAL AND FUNCTIONAL ANALYSIS OF XYN10C CONTAINING THE JRNL TITL 3 CBM22-1-CBM22-2 TANDEM. JRNL REF J.BIOL.CHEM. V. 290 17116 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26001782 JRNL DOI 10.1074/JBC.M115.659300 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 97488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5129 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7223 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 399 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8355 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 523 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.53000 REMARK 3 B22 (A**2) : -0.53000 REMARK 3 B33 (A**2) : 1.71000 REMARK 3 B12 (A**2) : -0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.148 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.251 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8565 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11601 ; 1.147 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1053 ; 5.697 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 411 ;34.643 ;24.672 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1464 ;12.652 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;12.897 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1245 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6570 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4221 ; 0.706 ; 1.621 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5271 ; 1.207 ; 2.430 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4344 ; 0.795 ; 1.667 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 13809 ; 2.916 ;13.697 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 340 A 691 5 REMARK 3 1 B 340 B 691 5 REMARK 3 1 C 340 C 691 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1408 ; 0.10 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 1408 ; 0.15 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 1408 ; 0.13 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 1377 ; 0.31 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 1377 ; 0.36 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 C (A): 1377 ; 0.34 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1408 ; 2.10 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1408 ; 1.63 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 1408 ; 2.74 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1377 ; 2.04 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 1377 ; 1.66 ; 10.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 1377 ; 2.69 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4W8L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000201316. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801 REMARK 200 MONOCHROMATOR : SILICON (1 1 1) CHANNEL-CUT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 102672 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 36.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.49400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2Q8X REMARK 200 REMARK 200 REMARK: THE CRYSTAL QUALITY IMPROVED AFTER CUTTING HISTIDINE TAIL REMARK 200 WITH THROMBIN. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG 3350, 0.1 M POTASSIUM REMARK 280 THIOCYANATE, 0.1 M SODIUM ACETATE, PH 5.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.46667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.23333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 439 -7.82 -56.95 REMARK 500 GLU A 593 42.97 -144.53 REMARK 500 LEU A 665 -167.98 -116.76 REMARK 500 ARG A 690 -94.82 -119.59 REMARK 500 LYS B 464 125.93 -39.08 REMARK 500 GLU B 593 41.93 -145.22 REMARK 500 LEU B 665 -167.73 -115.80 REMARK 500 ARG B 690 -93.23 -120.97 REMARK 500 ASN C 384 -31.10 -138.66 REMARK 500 ASP C 438 91.94 -164.91 REMARK 500 GLU C 593 42.16 -143.54 REMARK 500 ALA C 663 66.92 -150.49 REMARK 500 LEU C 665 -167.32 -116.39 REMARK 500 ASP C 682 82.81 -152.67 REMARK 500 ARG C 690 -92.76 -120.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 498 OD1 REMARK 620 2 ASP A 500 OD1 76.8 REMARK 620 3 ASP A 502 OD1 87.3 76.4 REMARK 620 4 ASP A 504 O 77.1 148.2 84.4 REMARK 620 5 ASP A 507 OD1 98.5 128.2 155.4 73.8 REMARK 620 6 ASP A 507 OD2 100.9 78.4 150.9 124.6 51.4 REMARK 620 7 HOH A1394 O 167.4 101.4 80.2 100.1 92.3 90.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 498 OD1 REMARK 620 2 ASP B 500 OD1 76.4 REMARK 620 3 ASP B 502 OD1 91.2 79.6 REMARK 620 4 ASP B 504 O 86.1 156.3 85.0 REMARK 620 5 ASP B 507 OD1 101.1 125.8 153.6 72.8 REMARK 620 6 ASP B 507 OD2 102.2 76.1 148.4 123.9 51.2 REMARK 620 7 HOH B1346 O 169.4 95.8 80.3 99.2 89.3 82.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C1101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 498 OD1 REMARK 620 2 ASP C 500 OD1 77.6 REMARK 620 3 ASP C 502 OD1 89.1 77.7 REMARK 620 4 ASP C 504 O 81.1 150.1 81.2 REMARK 620 5 ASP C 507 OD1 97.2 130.4 151.9 72.9 REMARK 620 6 ASP C 507 OD2 94.2 79.5 155.7 123.0 51.3 REMARK 620 7 HOH C1341 O 165.4 111.4 82.0 86.1 85.5 98.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA C 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 1102 DBREF 4W8L A 340 691 UNP O69230 XYNC_PAEBA 367 718 DBREF 4W8L B 340 691 UNP O69230 XYNC_PAEBA 367 718 DBREF 4W8L C 340 691 UNP O69230 XYNC_PAEBA 367 718 SEQRES 1 A 352 ASN ILE PRO ASP LEU ALA LYS LYS LEU GLY SER SER TYR SEQRES 2 A 352 ALA LEU GLY ALA ALA ILE ASP GLN THR ALA LEU ASP PRO SEQRES 3 A 352 LYS ASP PRO HIS SER GLU LEU LEU THR LYS HIS PHE ASN SEQRES 4 A 352 SER ILE THR ALA GLY ASN PHE MET LYS MET ASP ALA MET SEQRES 5 A 352 GLN PRO THR GLU GLY LYS PHE VAL TRP SER GLU ALA ASP SEQRES 6 A 352 LYS LEU VAL ASN PHE ALA ALA ALA ASN ASN MET GLN VAL SEQRES 7 A 352 ARG GLY HIS THR LEU LEU TRP HIS SER GLN VAL PRO ASP SEQRES 8 A 352 TRP PHE PHE THR ASP PRO ASN ASP PRO SER LYS PRO ALA SEQRES 9 A 352 THR ARG GLU GLN LEU MET GLN ARG MET LYS THR HIS ILE SEQRES 10 A 352 GLN THR ILE VAL SER ARG TYR LYS GLY LYS VAL HIS THR SEQRES 11 A 352 TRP ASP VAL VAL ASN GLU VAL ILE SER ASP GLY GLY GLY SEQRES 12 A 352 LEU ARG ASN GLN ALA SER GLY SER LYS TRP ARG ASP ILE SEQRES 13 A 352 ILE GLY ASP VAL ASP GLY ASP GLY ASP ASP SER ASP TYR SEQRES 14 A 352 ILE GLU LEU ALA PHE ARG TYR ALA ARG GLU ALA ASP PRO SEQRES 15 A 352 ASP ALA VAL LEU VAL ILE ASN ASP TYR GLY ILE GLU GLY SEQRES 16 A 352 SER VAL SER LYS MET ASN ASP MET VAL LYS LEU VAL GLU SEQRES 17 A 352 LYS LEU LEU ALA LYS GLY THR PRO ILE ASP ALA ILE GLY SEQRES 18 A 352 PHE GLN MET HIS VAL SER MET TYR GLY PRO ASP ILE LYS SEQRES 19 A 352 GLN ILE ARG GLU ALA PHE ASN ARG ALA ALA ALA LEU GLY SEQRES 20 A 352 VAL HIS ILE GLN VAL THR GLU LEU ASP MET SER ILE TYR SEQRES 21 A 352 SER GLY ASN SER GLU GLN GLU LYS PRO VAL THR ASP GLU SEQRES 22 A 352 MET MET LEU GLU GLN ALA TYR ARG TYR ARG ALA LEU PHE SEQRES 23 A 352 ASP LEU PHE LYS GLU PHE ASP ASP ARG GLY VAL MET ASP SEQRES 24 A 352 SER VAL THR LEU TRP GLY LEU ALA ASP ASP GLY THR TRP SEQRES 25 A 352 LEU ASP ASP PHE PRO VAL LYS GLY ARG LYS ASP ALA PRO SEQRES 26 A 352 LEU LEU PHE ASP ARG LYS LEU LYS ALA LYS PRO ALA TYR SEQRES 27 A 352 TRP ALA LEU VAL ASP PRO SER THR LEU PRO VAL TYR ARG SEQRES 28 A 352 ASN SEQRES 1 B 352 ASN ILE PRO ASP LEU ALA LYS LYS LEU GLY SER SER TYR SEQRES 2 B 352 ALA LEU GLY ALA ALA ILE ASP GLN THR ALA LEU ASP PRO SEQRES 3 B 352 LYS ASP PRO HIS SER GLU LEU LEU THR LYS HIS PHE ASN SEQRES 4 B 352 SER ILE THR ALA GLY ASN PHE MET LYS MET ASP ALA MET SEQRES 5 B 352 GLN PRO THR GLU GLY LYS PHE VAL TRP SER GLU ALA ASP SEQRES 6 B 352 LYS LEU VAL ASN PHE ALA ALA ALA ASN ASN MET GLN VAL SEQRES 7 B 352 ARG GLY HIS THR LEU LEU TRP HIS SER GLN VAL PRO ASP SEQRES 8 B 352 TRP PHE PHE THR ASP PRO ASN ASP PRO SER LYS PRO ALA SEQRES 9 B 352 THR ARG GLU GLN LEU MET GLN ARG MET LYS THR HIS ILE SEQRES 10 B 352 GLN THR ILE VAL SER ARG TYR LYS GLY LYS VAL HIS THR SEQRES 11 B 352 TRP ASP VAL VAL ASN GLU VAL ILE SER ASP GLY GLY GLY SEQRES 12 B 352 LEU ARG ASN GLN ALA SER GLY SER LYS TRP ARG ASP ILE SEQRES 13 B 352 ILE GLY ASP VAL ASP GLY ASP GLY ASP ASP SER ASP TYR SEQRES 14 B 352 ILE GLU LEU ALA PHE ARG TYR ALA ARG GLU ALA ASP PRO SEQRES 15 B 352 ASP ALA VAL LEU VAL ILE ASN ASP TYR GLY ILE GLU GLY SEQRES 16 B 352 SER VAL SER LYS MET ASN ASP MET VAL LYS LEU VAL GLU SEQRES 17 B 352 LYS LEU LEU ALA LYS GLY THR PRO ILE ASP ALA ILE GLY SEQRES 18 B 352 PHE GLN MET HIS VAL SER MET TYR GLY PRO ASP ILE LYS SEQRES 19 B 352 GLN ILE ARG GLU ALA PHE ASN ARG ALA ALA ALA LEU GLY SEQRES 20 B 352 VAL HIS ILE GLN VAL THR GLU LEU ASP MET SER ILE TYR SEQRES 21 B 352 SER GLY ASN SER GLU GLN GLU LYS PRO VAL THR ASP GLU SEQRES 22 B 352 MET MET LEU GLU GLN ALA TYR ARG TYR ARG ALA LEU PHE SEQRES 23 B 352 ASP LEU PHE LYS GLU PHE ASP ASP ARG GLY VAL MET ASP SEQRES 24 B 352 SER VAL THR LEU TRP GLY LEU ALA ASP ASP GLY THR TRP SEQRES 25 B 352 LEU ASP ASP PHE PRO VAL LYS GLY ARG LYS ASP ALA PRO SEQRES 26 B 352 LEU LEU PHE ASP ARG LYS LEU LYS ALA LYS PRO ALA TYR SEQRES 27 B 352 TRP ALA LEU VAL ASP PRO SER THR LEU PRO VAL TYR ARG SEQRES 28 B 352 ASN SEQRES 1 C 352 ASN ILE PRO ASP LEU ALA LYS LYS LEU GLY SER SER TYR SEQRES 2 C 352 ALA LEU GLY ALA ALA ILE ASP GLN THR ALA LEU ASP PRO SEQRES 3 C 352 LYS ASP PRO HIS SER GLU LEU LEU THR LYS HIS PHE ASN SEQRES 4 C 352 SER ILE THR ALA GLY ASN PHE MET LYS MET ASP ALA MET SEQRES 5 C 352 GLN PRO THR GLU GLY LYS PHE VAL TRP SER GLU ALA ASP SEQRES 6 C 352 LYS LEU VAL ASN PHE ALA ALA ALA ASN ASN MET GLN VAL SEQRES 7 C 352 ARG GLY HIS THR LEU LEU TRP HIS SER GLN VAL PRO ASP SEQRES 8 C 352 TRP PHE PHE THR ASP PRO ASN ASP PRO SER LYS PRO ALA SEQRES 9 C 352 THR ARG GLU GLN LEU MET GLN ARG MET LYS THR HIS ILE SEQRES 10 C 352 GLN THR ILE VAL SER ARG TYR LYS GLY LYS VAL HIS THR SEQRES 11 C 352 TRP ASP VAL VAL ASN GLU VAL ILE SER ASP GLY GLY GLY SEQRES 12 C 352 LEU ARG ASN GLN ALA SER GLY SER LYS TRP ARG ASP ILE SEQRES 13 C 352 ILE GLY ASP VAL ASP GLY ASP GLY ASP ASP SER ASP TYR SEQRES 14 C 352 ILE GLU LEU ALA PHE ARG TYR ALA ARG GLU ALA ASP PRO SEQRES 15 C 352 ASP ALA VAL LEU VAL ILE ASN ASP TYR GLY ILE GLU GLY SEQRES 16 C 352 SER VAL SER LYS MET ASN ASP MET VAL LYS LEU VAL GLU SEQRES 17 C 352 LYS LEU LEU ALA LYS GLY THR PRO ILE ASP ALA ILE GLY SEQRES 18 C 352 PHE GLN MET HIS VAL SER MET TYR GLY PRO ASP ILE LYS SEQRES 19 C 352 GLN ILE ARG GLU ALA PHE ASN ARG ALA ALA ALA LEU GLY SEQRES 20 C 352 VAL HIS ILE GLN VAL THR GLU LEU ASP MET SER ILE TYR SEQRES 21 C 352 SER GLY ASN SER GLU GLN GLU LYS PRO VAL THR ASP GLU SEQRES 22 C 352 MET MET LEU GLU GLN ALA TYR ARG TYR ARG ALA LEU PHE SEQRES 23 C 352 ASP LEU PHE LYS GLU PHE ASP ASP ARG GLY VAL MET ASP SEQRES 24 C 352 SER VAL THR LEU TRP GLY LEU ALA ASP ASP GLY THR TRP SEQRES 25 C 352 LEU ASP ASP PHE PRO VAL LYS GLY ARG LYS ASP ALA PRO SEQRES 26 C 352 LEU LEU PHE ASP ARG LYS LEU LYS ALA LYS PRO ALA TYR SEQRES 27 C 352 TRP ALA LEU VAL ASP PRO SER THR LEU PRO VAL TYR ARG SEQRES 28 C 352 ASN HET CA A1101 1 HET GOL A1102 6 HET CA B1101 1 HET GOL B1102 6 HET CA C1101 1 HET GOL C1102 6 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 CA 3(CA 2+) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 10 HOH *523(H2 O) HELIX 1 AA1 ASP A 343 GLY A 349 1 7 HELIX 2 AA2 ASP A 359 ASP A 364 5 6 HELIX 3 AA3 ASP A 367 PHE A 377 1 11 HELIX 4 AA4 LYS A 387 GLN A 392 1 6 HELIX 5 AA5 TRP A 400 ASN A 413 1 14 HELIX 6 AA6 PRO A 429 THR A 434 5 6 HELIX 7 AA7 THR A 444 LYS A 464 1 21 HELIX 8 AA8 ASN A 485 GLY A 489 5 5 HELIX 9 AA9 LYS A 491 GLY A 497 1 7 HELIX 10 AB1 SER A 506 ASP A 520 1 15 HELIX 11 AB2 SER A 535 LYS A 552 1 18 HELIX 12 AB3 ASP A 571 ALA A 584 1 14 HELIX 13 AB4 THR A 610 ASP A 633 1 24 HELIX 14 AB5 ALA A 646 ASP A 654 5 9 HELIX 15 AB6 LYS A 674 ASP A 682 1 9 HELIX 16 AB7 PRO A 683 LEU A 686 5 4 HELIX 17 AB8 ASP B 343 GLY B 349 1 7 HELIX 18 AB9 ASP B 359 ASP B 364 5 6 HELIX 19 AC1 ASP B 367 PHE B 377 1 11 HELIX 20 AC2 LYS B 387 GLN B 392 1 6 HELIX 21 AC3 TRP B 400 ASN B 413 1 14 HELIX 22 AC4 PRO B 429 PHE B 432 5 4 HELIX 23 AC5 THR B 444 TYR B 463 1 20 HELIX 24 AC6 ASN B 485 GLY B 489 5 5 HELIX 25 AC7 LYS B 491 GLY B 497 1 7 HELIX 26 AC8 SER B 506 ASP B 520 1 15 HELIX 27 AC9 SER B 535 LYS B 552 1 18 HELIX 28 AD1 ASP B 571 LEU B 585 1 15 HELIX 29 AD2 THR B 610 ARG B 634 1 25 HELIX 30 AD3 ALA B 646 ASP B 654 5 9 HELIX 31 AD4 LYS B 674 ASP B 682 1 9 HELIX 32 AD5 PRO B 683 LEU B 686 5 4 HELIX 33 AD6 ASP C 343 GLY C 349 1 7 HELIX 34 AD7 ASP C 359 ASP C 364 5 6 HELIX 35 AD8 ASP C 367 PHE C 377 1 11 HELIX 36 AD9 LYS C 387 GLN C 392 1 6 HELIX 37 AE1 TRP C 400 ASN C 413 1 14 HELIX 38 AE2 PRO C 429 PHE C 432 5 4 HELIX 39 AE3 THR C 444 LYS C 464 1 21 HELIX 40 AE4 ASN C 485 GLY C 489 5 5 HELIX 41 AE5 LYS C 491 GLY C 497 1 7 HELIX 42 AE6 SER C 506 ASP C 520 1 15 HELIX 43 AE7 SER C 535 LYS C 552 1 18 HELIX 44 AE8 ASP C 571 ALA C 584 1 14 HELIX 45 AE9 THR C 610 ASP C 633 1 24 HELIX 46 AF1 THR C 650 ASP C 654 5 5 HELIX 47 AF2 LYS C 674 ASP C 682 1 9 HELIX 48 AF3 PRO C 683 LEU C 686 5 4 SHEET 1 AA110 HIS A 564 SER A 566 0 SHEET 2 AA110 HIS A 588 SER A 597 1 O SER A 597 N VAL A 565 SHEET 3 AA110 MET A 637 LEU A 642 1 O ASP A 638 N ILE A 589 SHEET 4 AA110 ALA A 353 ILE A 358 1 N GLY A 355 O LEU A 642 SHEET 5 AA110 SER A 379 ALA A 382 1 O THR A 381 N ILE A 358 SHEET 6 AA110 GLN A 416 HIS A 420 1 O ARG A 418 N ILE A 380 SHEET 7 AA110 THR A 469 ASN A 474 1 O THR A 469 N GLY A 419 SHEET 8 AA110 VAL A 524 ASP A 529 1 O VAL A 526 N TRP A 470 SHEET 9 AA110 ALA A 558 PHE A 561 1 O GLY A 560 N ILE A 527 SHEET 10 AA110 HIS A 588 SER A 597 1 O GLN A 590 N PHE A 561 SHEET 1 AA210 HIS B 564 SER B 566 0 SHEET 2 AA210 HIS B 588 SER B 597 1 O SER B 597 N VAL B 565 SHEET 3 AA210 MET B 637 LEU B 642 1 O THR B 641 N VAL B 591 SHEET 4 AA210 ALA B 353 ILE B 358 1 N GLY B 355 O VAL B 640 SHEET 5 AA210 SER B 379 ALA B 382 1 O THR B 381 N ILE B 358 SHEET 6 AA210 GLN B 416 HIS B 420 1 O ARG B 418 N ILE B 380 SHEET 7 AA210 THR B 469 ASN B 474 1 O THR B 469 N GLY B 419 SHEET 8 AA210 VAL B 524 ASP B 529 1 O VAL B 526 N TRP B 470 SHEET 9 AA210 ALA B 558 PHE B 561 1 O GLY B 560 N ILE B 527 SHEET 10 AA210 HIS B 588 SER B 597 1 O GLN B 590 N PHE B 561 SHEET 1 AA3 2 THR B 434 ASP B 435 0 SHEET 2 AA3 2 ASP B 438 PRO B 442 -1 O LYS B 441 N ASP B 435 SHEET 1 AA410 HIS C 564 SER C 566 0 SHEET 2 AA410 HIS C 588 SER C 597 1 O SER C 597 N VAL C 565 SHEET 3 AA410 MET C 637 LEU C 642 1 O THR C 641 N VAL C 591 SHEET 4 AA410 ALA C 353 ILE C 358 1 N GLY C 355 O LEU C 642 SHEET 5 AA410 SER C 379 ALA C 382 1 O THR C 381 N ILE C 358 SHEET 6 AA410 GLN C 416 GLY C 419 1 O ARG C 418 N ILE C 380 SHEET 7 AA410 THR C 469 ASN C 474 1 O THR C 469 N GLY C 419 SHEET 8 AA410 VAL C 524 ASP C 529 1 O VAL C 526 N TRP C 470 SHEET 9 AA410 ALA C 558 PHE C 561 1 O GLY C 560 N ILE C 527 SHEET 10 AA410 HIS C 588 SER C 597 1 O GLN C 590 N PHE C 561 SHEET 1 AA5 2 THR C 434 ASP C 435 0 SHEET 2 AA5 2 ASP C 438 PRO C 442 -1 O LYS C 441 N ASP C 435 LINK OD1 ASP A 498 CA CA A1101 1555 1555 2.35 LINK OD1 ASP A 500 CA CA A1101 1555 1555 2.39 LINK OD1 ASP A 502 CA CA A1101 1555 1555 2.36 LINK O ASP A 504 CA CA A1101 1555 1555 2.23 LINK OD1 ASP A 507 CA CA A1101 1555 1555 2.43 LINK OD2 ASP A 507 CA CA A1101 1555 1555 2.62 LINK CA CA A1101 O HOH A1394 1555 1555 2.22 LINK OD1 ASP B 498 CA CA B1101 1555 1555 2.46 LINK OD1 ASP B 500 CA CA B1101 1555 1555 2.35 LINK OD1 ASP B 502 CA CA B1101 1555 1555 2.39 LINK O ASP B 504 CA CA B1101 1555 1555 2.21 LINK OD1 ASP B 507 CA CA B1101 1555 1555 2.45 LINK OD2 ASP B 507 CA CA B1101 1555 1555 2.63 LINK CA CA B1101 O HOH B1346 1555 1555 2.20 LINK OD1 ASP C 498 CA CA C1101 1555 1555 2.36 LINK OD1 ASP C 500 CA CA C1101 1555 1555 2.38 LINK OD1 ASP C 502 CA CA C1101 1555 1555 2.33 LINK O ASP C 504 CA CA C1101 1555 1555 2.42 LINK OD1 ASP C 507 CA CA C1101 1555 1555 2.40 LINK OD2 ASP C 507 CA CA C1101 1555 1555 2.65 LINK CA CA C1101 O HOH C1341 1555 1555 2.24 CISPEP 1 HIS A 420 THR A 421 0 -5.85 CISPEP 2 GLY A 569 PRO A 570 0 -0.71 CISPEP 3 PHE A 655 PRO A 656 0 0.02 CISPEP 4 HIS B 420 THR B 421 0 -2.96 CISPEP 5 GLY B 569 PRO B 570 0 -4.08 CISPEP 6 PHE B 655 PRO B 656 0 -1.16 CISPEP 7 HIS C 420 THR C 421 0 -2.28 CISPEP 8 GLY C 569 PRO C 570 0 -4.19 CISPEP 9 PHE C 655 PRO C 656 0 1.60 SITE 1 AC1 6 ASP A 498 ASP A 500 ASP A 502 ASP A 504 SITE 2 AC1 6 ASP A 507 HOH A1394 SITE 1 AC2 6 ALA A 357 GLY A 383 TRP A 643 GLY A 649 SITE 2 AC2 6 THR A 650 TRP A 651 SITE 1 AC3 6 ASP B 498 ASP B 500 ASP B 502 ASP B 504 SITE 2 AC3 6 ASP B 507 HOH B1346 SITE 1 AC4 8 ALA B 357 GLY B 383 ASN B 384 TRP B 643 SITE 2 AC4 8 GLY B 649 THR B 650 TRP B 651 HOH B1218 SITE 1 AC5 6 ASP C 498 ASP C 500 ASP C 502 ASP C 504 SITE 2 AC5 6 ASP C 507 HOH C1341 SITE 1 AC6 7 GLY C 383 ASN C 384 TRP C 643 GLY C 649 SITE 2 AC6 7 THR C 650 TRP C 651 HOH C1218 CRYST1 126.689 126.689 57.700 90.00 90.00 120.00 P 32 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007893 0.004557 0.000000 0.00000 SCALE2 0.000000 0.009114 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017331 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.511251 0.859408 0.006366 64.05239 1 MTRIX2 2 -0.859376 -0.511119 -0.015148 35.34011 1 MTRIX3 2 -0.009765 -0.013215 0.999865 17.63706 1 MTRIX1 3 -0.482585 -0.875843 -0.003273 62.65968 1 MTRIX2 3 0.875840 -0.482593 0.002804 -37.88972 1 MTRIX3 3 -0.004035 -0.001513 0.999991 -17.38316 1