HEADER VIRAL PROTEIN 28-AUG-14 4WA3 TITLE THE CRYSTAL STRUCTURE OF NEURAMINIDASE FROM A H3N8 INFLUENZA VIRUS TITLE 2 ISOLATED FROM NEW ENGLAND HARBOR SEALS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURAMINIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 81-468; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/HARBOR SOURCE 3 SEAL/MASSACHUSETTS/1/2011(H3N8)); SOURCE 4 ORGANISM_TAXID: 1136533; SOURCE 5 GENE: NA; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS NEURAMINIDASE, INFLUENZA VIRUS, SEAL, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.YANG,J.M.VILLANUEVA,L.V.GUBAREVA,J.STEVENS REVDAT 5 27-SEP-23 4WA3 1 HETSYN REVDAT 4 29-JUL-20 4WA3 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 22-NOV-17 4WA3 1 COMPND SOURCE JRNL REMARK REVDAT 2 18-FEB-15 4WA3 1 JRNL REVDAT 1 14-JAN-15 4WA3 0 JRNL AUTH H.YANG,H.T.NGUYEN,P.J.CARNEY,Z.GUO,J.C.CHANG,J.JONES, JRNL AUTH 2 C.T.DAVIS,J.M.VILLANUEVA,L.V.GUBAREVA,J.STEVENS JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF SURFACE PROTEINS FROM JRNL TITL 2 AN A(H3N8) INFLUENZA VIRUS ISOLATED FROM NEW ENGLAND HARBOR JRNL TITL 3 SEALS. JRNL REF J.VIROL. V. 89 2801 2015 JRNL REFN ESSN 1098-5514 JRNL PMID 25540377 JRNL DOI 10.1128/JVI.02723-14 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 39185 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1982 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.1991 - 4.3368 0.98 2813 130 0.1721 0.1723 REMARK 3 2 4.3368 - 3.4440 0.99 2805 160 0.1468 0.1440 REMARK 3 3 3.4440 - 3.0091 0.99 2751 170 0.1676 0.1879 REMARK 3 4 3.0091 - 2.7342 1.00 2788 151 0.1758 0.1955 REMARK 3 5 2.7342 - 2.5384 1.00 2832 125 0.1635 0.1609 REMARK 3 6 2.5384 - 2.3888 0.99 2777 121 0.1547 0.1629 REMARK 3 7 2.3888 - 2.2692 0.95 2675 136 0.1482 0.1533 REMARK 3 8 2.2692 - 2.1705 0.94 2625 127 0.1596 0.1980 REMARK 3 9 2.1705 - 2.0869 0.94 2693 118 0.1614 0.1914 REMARK 3 10 2.0869 - 2.0149 0.94 2569 163 0.1631 0.1803 REMARK 3 11 2.0149 - 1.9519 0.93 2617 131 0.1687 0.1936 REMARK 3 12 1.9519 - 1.8962 0.90 2498 150 0.1624 0.1928 REMARK 3 13 1.8962 - 1.8462 0.89 2457 152 0.1806 0.2138 REMARK 3 14 1.8462 - 1.8010 0.83 2303 148 0.1808 0.2046 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3117 REMARK 3 ANGLE : 1.124 4215 REMARK 3 CHIRALITY : 0.068 454 REMARK 3 PLANARITY : 0.005 546 REMARK 3 DIHEDRAL : 14.533 1126 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 81 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.4035 28.3173 121.2008 REMARK 3 T TENSOR REMARK 3 T11: 0.1645 T22: 0.1661 REMARK 3 T33: 0.1376 T12: -0.0004 REMARK 3 T13: -0.0043 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.1011 L22: 0.0725 REMARK 3 L33: 0.0229 L12: -0.0260 REMARK 3 L13: -0.0293 L23: -0.0333 REMARK 3 S TENSOR REMARK 3 S11: -0.0039 S12: 0.0350 S13: -0.0652 REMARK 3 S21: -0.0187 S22: -0.0084 S23: -0.0226 REMARK 3 S31: -0.0031 S32: 0.0563 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): -63.7949 38.5201 138.4462 REMARK 3 T TENSOR REMARK 3 T11: 0.2393 T22: 0.2032 REMARK 3 T33: 0.1596 T12: -0.0148 REMARK 3 T13: 0.0288 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.0036 L22: -0.0015 REMARK 3 L33: 0.0066 L12: 0.0016 REMARK 3 L13: 0.0024 L23: -0.0068 REMARK 3 S TENSOR REMARK 3 S11: 0.0043 S12: -0.0709 S13: -0.0573 REMARK 3 S21: 0.0723 S22: -0.0089 S23: 0.0444 REMARK 3 S31: 0.0230 S32: -0.0905 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 155 THROUGH 468 ) REMARK 3 ORIGIN FOR THE GROUP (A): -63.8680 21.5407 122.1125 REMARK 3 T TENSOR REMARK 3 T11: 0.1243 T22: 0.1305 REMARK 3 T33: 0.1455 T12: -0.0009 REMARK 3 T13: 0.0059 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.3628 L22: 0.4343 REMARK 3 L33: 0.2248 L12: 0.0528 REMARK 3 L13: 0.0004 L23: 0.0467 REMARK 3 S TENSOR REMARK 3 S11: -0.0041 S12: 0.0072 S13: -0.0815 REMARK 3 S21: 0.0016 S22: 0.0114 S23: 0.0600 REMARK 3 S31: 0.0071 S32: -0.0093 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WA3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203457. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE-CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39209 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2HT5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M NICKEL CHLORIDE, 0.1 M TRIS REMARK 280 -HCL, PH 8.5, 20% PEG2000 MME, MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.40800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.40800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.22450 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.40800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.40800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.22450 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 45.40800 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 45.40800 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 55.22450 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 45.40800 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 45.40800 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 55.22450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -120.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -90.81600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 90.81600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 90.81600 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -90.81600 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 697 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN A 144 H1 NAG A 501 1.22 REMARK 500 HZ1 LYS A 187 O HOH A 603 1.38 REMARK 500 HH11 ARG A 311 O HOH A 930 1.47 REMARK 500 OD1 ASP A 416 O HOH A 601 1.93 REMARK 500 O HOH A 898 O HOH A 923 2.04 REMARK 500 O HOH A 616 O HOH A 645 2.11 REMARK 500 O HOH A 923 O HOH A 925 2.11 REMARK 500 O HOH A 845 O HOH A 872 2.14 REMARK 500 NH1 ARG A 311 O HOH A 930 2.16 REMARK 500 O HOH A 613 O HOH A 619 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 247 O SER A 329 3465 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 98 -60.01 -97.02 REMARK 500 ARG A 109 -36.16 -132.30 REMARK 500 ALA A 176 132.67 -172.27 REMARK 500 LYS A 199 45.50 -162.27 REMARK 500 ASP A 220 80.85 -150.17 REMARK 500 ILE A 221 70.68 51.07 REMARK 500 THR A 224 -158.00 -138.63 REMARK 500 PHE A 269 63.69 -154.00 REMARK 500 CYS A 290 -166.06 -119.88 REMARK 500 TRP A 294 -76.86 -98.89 REMARK 500 TYR A 344 -166.61 65.04 REMARK 500 ASN A 378 19.07 59.79 REMARK 500 SER A 400 -136.41 -113.95 REMARK 500 TRP A 455 -169.49 -162.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 501 REMARK 610 FUC A 502 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 292 O REMARK 620 2 GLY A 296 O 96.4 REMARK 620 3 ASP A 322 OD2 88.4 94.5 REMARK 620 4 TYR A 344 O 89.1 161.6 103.2 REMARK 620 5 HOH A 704 O 166.7 95.9 95.7 77.6 REMARK 620 6 HOH A 715 O 84.1 82.9 171.7 80.2 92.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 504 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 631 O REMARK 620 2 HOH A 669 O 87.9 REMARK 620 3 HOH A 694 O 85.1 81.3 REMARK 620 4 HOH A 700 O 95.8 175.5 96.5 REMARK 620 5 HOH A 701 O 170.3 89.9 85.2 86.1 REMARK 620 6 HOH A 729 O 91.4 88.0 168.8 94.4 97.9 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WA1 RELATED DB: PDB REMARK 900 RELATED ID: 4WA2 RELATED DB: PDB REMARK 900 RELATED ID: 4WA4 RELATED DB: PDB REMARK 900 RELATED ID: 4WA5 RELATED DB: PDB DBREF 4WA3 A 81 468 UNP I6NW33 I6NW33_9INFA 81 468 SEQADV 4WA3 GLN A 84 UNP I6NW33 ASN 84 CONFLICT SEQADV 4WA3 GLY A 313 UNP I6NW33 ARG 313 CONFLICT SEQADV 4WA3 ASN A 396 UNP I6NW33 ASP 396 CONFLICT SEQRES 1 A 388 GLN PHE MET GLN ASN THR GLU ALA LEU CYS ASP VAL LYS SEQRES 2 A 388 GLY PHE ALA PRO PHE SER LYS ASP ASN GLY ILE ARG ILE SEQRES 3 A 388 GLY SER ARG GLY HIS VAL PHE VAL ILE ARG GLU PRO PHE SEQRES 4 A 388 VAL SER CYS SER PRO THR GLU CYS ARG THR PHE PHE LEU SEQRES 5 A 388 THR GLN GLY SER LEU LEU ASN ASP LYS HIS SER ASN GLY SEQRES 6 A 388 THR GLU LYS ASP ARG SER PRO TYR ARG THR LEU MET SER SEQRES 7 A 388 VAL GLU ILE GLY GLN SER PRO ASN VAL TYR GLN ALA ARG SEQRES 8 A 388 PHE GLU ALA VAL ALA TRP SER ALA THR ALA CYS HIS ASP SEQRES 9 A 388 GLY LYS LYS TRP MET THR ILE GLY VAL THR GLY PRO ASP SEQRES 10 A 388 ALA LYS ALA VAL ALA VAL VAL HIS TYR GLY GLY ILE PRO SEQRES 11 A 388 THR ASP VAL ILE ASN SER TRP ALA GLY ASP ILE LEU ARG SEQRES 12 A 388 THR GLN GLU SER SER CYS THR CYS ILE LEU GLY GLU CYS SEQRES 13 A 388 TYR TRP VAL MET THR ASP GLY PRO ALA ASN ARG GLN ALA SEQRES 14 A 388 GLN TYR ARG ALA PHE LYS ALA LYS GLN GLY LYS ILE ILE SEQRES 15 A 388 GLY GLN VAL GLU ILE SER PHE ASN GLY GLY HIS ILE GLU SEQRES 16 A 388 GLU CYS SER CYS TYR PRO ASN ASP GLY LYS VAL GLU CYS SEQRES 17 A 388 VAL CYS ARG ASP ASN TRP THR GLY THR ASN ARG PRO VAL SEQRES 18 A 388 LEU VAL ILE SER PRO ASP LEU SER TYR ARG VAL GLY TYR SEQRES 19 A 388 LEU CYS ALA GLY LEU SER SER ASP THR PRO ARG GLY GLU SEQRES 20 A 388 ASP SER GLN PHE THR GLY SER CYS THR SER PRO VAL GLY SEQRES 21 A 388 ASN GLN GLY TYR GLY VAL LYS GLY PHE GLY PHE ARG GLN SEQRES 22 A 388 GLY ASN ASP VAL TRP MET GLY ARG THR ILE SER ARG THR SEQRES 23 A 388 SER ARG SER GLY PHE GLU ILE LEU LYS VAL ARG ASN GLY SEQRES 24 A 388 TRP VAL GLN THR SER LYS GLU GLN ILE LYS ARG GLN VAL SEQRES 25 A 388 VAL VAL ASP ASN LEU ASN ARG SER GLY TYR SER GLY SER SEQRES 26 A 388 PHE THR LEU PRO VAL GLU LEU THR LYS ARG ASP CYS LEU SEQRES 27 A 388 VAL PRO CYS PHE TRP VAL GLU MET ILE ARG GLY LYS PRO SEQRES 28 A 388 ALA GLU LYS THR ILE TRP THR SER SER SER SER ILE VAL SEQRES 29 A 388 MET CYS GLY VAL ASP HIS GLU VAL ALA ASP TRP SER TRP SEQRES 30 A 388 HIS ASP GLY ALA ILE LEU PRO PHE ASP ILE ASP HET NAG A 501 28 HET FUC A 502 10 HET CA A 503 1 HET NI A 504 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM NI NICKEL (II) ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 2 NAG C8 H15 N O6 FORMUL 3 FUC C6 H12 O5 FORMUL 4 CA CA 2+ FORMUL 5 NI NI 2+ FORMUL 6 HOH *336(H2 O) HELIX 1 AA1 ASN A 102 GLY A 107 1 6 HELIX 2 AA2 ASP A 140 ASN A 144 5 5 HELIX 3 AA3 ASN A 166 ALA A 170 5 5 HELIX 4 AA4 PRO A 409 LYS A 414 1 6 SHEET 1 AA1 4 GLY A 94 LYS A 100 0 SHEET 2 AA1 4 THR A 438 VAL A 448 -1 O VAL A 444 N PHE A 98 SHEET 3 AA1 4 VAL A 419 GLY A 429 -1 N PRO A 420 O GLY A 447 SHEET 4 AA1 4 SER A 403 LEU A 408 -1 N PHE A 406 O CYS A 421 SHEET 1 AA2 4 PHE A 113 CYS A 122 0 SHEET 2 AA2 4 CYS A 127 LEU A 137 -1 O PHE A 130 N PHE A 119 SHEET 3 AA2 4 THR A 155 GLU A 160 -1 O THR A 155 N THR A 133 SHEET 4 AA2 4 ARG A 171 VAL A 175 -1 O ALA A 174 N LEU A 156 SHEET 1 AA3 4 SER A 178 HIS A 183 0 SHEET 2 AA3 4 TRP A 188 THR A 194 -1 O MET A 189 N CYS A 182 SHEET 3 AA3 4 VAL A 201 TYR A 206 -1 O HIS A 205 N THR A 190 SHEET 4 AA3 4 ILE A 209 ASN A 215 -1 O THR A 211 N VAL A 204 SHEET 1 AA4 4 THR A 230 ILE A 232 0 SHEET 2 AA4 4 GLU A 235 ASP A 242 -1 O TYR A 237 N THR A 230 SHEET 3 AA4 4 GLN A 250 LYS A 257 -1 O ARG A 252 N MET A 240 SHEET 4 AA4 4 LYS A 260 GLU A 266 -1 O ILE A 262 N LYS A 255 SHEET 1 AA5 4 GLU A 275 ASN A 282 0 SHEET 2 AA5 4 LYS A 285 ARG A 291 -1 O GLU A 287 N TYR A 280 SHEET 3 AA5 4 PRO A 300 ILE A 304 -1 O ILE A 304 N VAL A 286 SHEET 4 AA5 4 TYR A 310 TYR A 314 -1 O ARG A 311 N VAL A 303 SHEET 1 AA6 4 GLY A 350 GLN A 353 0 SHEET 2 AA6 4 ASP A 356 ARG A 361 -1 O TRP A 358 N PHE A 351 SHEET 3 AA6 4 SER A 369 VAL A 376 -1 O LEU A 374 N MET A 359 SHEET 4 AA6 4 GLN A 387 ARG A 399 -1 O ILE A 388 N LYS A 375 SSBOND 1 CYS A 90 CYS A 417 1555 1555 2.03 SSBOND 2 CYS A 122 CYS A 127 1555 1555 2.04 SSBOND 3 CYS A 182 CYS A 229 1555 1555 2.04 SSBOND 4 CYS A 231 CYS A 236 1555 1555 2.04 SSBOND 5 CYS A 277 CYS A 290 1555 1555 2.07 SSBOND 6 CYS A 279 CYS A 288 1555 1555 2.05 SSBOND 7 CYS A 316 CYS A 335 1555 1555 2.04 SSBOND 8 CYS A 421 CYS A 446 1555 1555 2.04 LINK O ASP A 292 CA CA A 503 1555 1555 2.29 LINK O GLY A 296 CA CA A 503 1555 1555 2.33 LINK OD2 ASP A 322 CA CA A 503 1555 1555 2.37 LINK O TYR A 344 CA CA A 503 1555 1555 2.32 LINK CA CA A 503 O HOH A 704 1555 1555 2.41 LINK CA CA A 503 O HOH A 715 1555 1555 2.50 LINK NI NI A 504 O HOH A 631 1555 4455 2.08 LINK NI NI A 504 O HOH A 669 1555 4455 2.19 LINK NI NI A 504 O HOH A 694 1555 1555 2.26 LINK NI NI A 504 O HOH A 700 1555 4455 2.16 LINK NI NI A 504 O HOH A 701 1555 1555 2.20 LINK NI NI A 504 O HOH A 729 1555 4455 2.08 CISPEP 1 THR A 323 PRO A 324 0 2.90 CISPEP 2 LYS A 430 PRO A 431 0 1.73 CISPEP 3 LEU A 463 PRO A 464 0 -4.48 CRYST1 90.816 90.816 110.449 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011011 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011011 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009054 0.00000