HEADER PROTEIN BINDING/RNA 29-AUG-14 4WAL TITLE CRYSTAL STRUCTURE OF SELENOMETHIONINE MSL5 PROTEIN IN COMPLEX WITH RNA TITLE 2 AT 2.2 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: BRANCHPOINT-BRIDGING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MUD SYNTHETIC-LETHAL 5 PROTEIN,SPLICING FACTOR 1,ZINC FINGER COMPND 5 PROTEIN BBP; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RNA (5'-R(P*UP*AP*CP*UP*AP*AP*CP*A)-3'); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: MSL5, BBP, SF1, YLR116W, L2949; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: B834 (DE3); SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS MSL5, BBP, RNA BINDING, YEAST PRE-MRNA SPLICING, PROTEIN BINDING-RNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.JACEWICZ,P.SMITH,L.CHICO,B.SCHWER,S.SHUMAN REVDAT 7 27-DEC-23 4WAL 1 REMARK REVDAT 6 25-DEC-19 4WAL 1 REMARK REVDAT 5 20-SEP-17 4WAL 1 SOURCE REVDAT 4 06-SEP-17 4WAL 1 SOURCE JRNL REMARK REVDAT 3 04-MAR-15 4WAL 1 JRNL REVDAT 2 04-FEB-15 4WAL 1 JRNL REVDAT 1 17-DEC-14 4WAL 0 JRNL AUTH A.JACEWICZ,L.CHICO,P.SMITH,B.SCHWER,S.SHUMAN JRNL TITL STRUCTURAL BASIS FOR RECOGNITION OF INTRON BRANCHPOINT RNA JRNL TITL 2 BY YEAST MSL5 AND SELECTIVE EFFECTS OF INTERFACIAL MUTATIONS JRNL TITL 3 ON SPLICING OF YEAST PRE-MRNAS. JRNL REF RNA V. 21 401 2015 JRNL REFN ESSN 1469-9001 JRNL PMID 25587180 JRNL DOI 10.1261/RNA.048942.114 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.880 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 9378 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 452 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.6551 - 3.1726 1.00 3100 158 0.1614 0.1920 REMARK 3 2 3.1726 - 2.5184 1.00 2948 135 0.1922 0.2450 REMARK 3 3 2.5184 - 2.2001 1.00 2878 159 0.1789 0.2441 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1188 REMARK 3 ANGLE : 1.050 1637 REMARK 3 CHIRALITY : 0.038 184 REMARK 3 PLANARITY : 0.005 193 REMARK 3 DIHEDRAL : 14.927 491 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4593 27.5481 17.2392 REMARK 3 T TENSOR REMARK 3 T11: 0.1963 T22: 0.1430 REMARK 3 T33: 0.1817 T12: -0.0032 REMARK 3 T13: 0.0050 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 2.1302 L22: 1.5531 REMARK 3 L33: 2.1512 L12: -0.3576 REMARK 3 L13: 0.1276 L23: -1.0789 REMARK 3 S TENSOR REMARK 3 S11: 0.0408 S12: 0.0641 S13: -0.0834 REMARK 3 S21: -0.0872 S22: 0.0178 S23: 0.0078 REMARK 3 S31: -0.0576 S32: -0.2280 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 243 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8413 23.7743 18.6470 REMARK 3 T TENSOR REMARK 3 T11: 0.1231 T22: 0.1506 REMARK 3 T33: 0.1868 T12: 0.0046 REMARK 3 T13: 0.0005 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 2.5709 L22: 1.2544 REMARK 3 L33: 4.0985 L12: -0.3100 REMARK 3 L13: 0.1558 L23: -0.3285 REMARK 3 S TENSOR REMARK 3 S11: 0.0450 S12: 0.0124 S13: -0.0388 REMARK 3 S21: 0.0071 S22: 0.0577 S23: 0.1216 REMARK 3 S31: 0.0708 S32: -0.3634 S33: 0.0108 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 244 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0221 43.5549 9.1707 REMARK 3 T TENSOR REMARK 3 T11: 0.4729 T22: 0.2629 REMARK 3 T33: 0.3316 T12: -0.0303 REMARK 3 T13: 0.0092 T23: 0.0321 REMARK 3 L TENSOR REMARK 3 L11: 0.7530 L22: 1.8840 REMARK 3 L33: 0.7569 L12: 1.0027 REMARK 3 L13: -0.6154 L23: -0.1275 REMARK 3 S TENSOR REMARK 3 S11: -0.3004 S12: 0.0634 S13: 0.1318 REMARK 3 S21: -0.2629 S22: 0.1116 S23: -0.5474 REMARK 3 S31: -0.6874 S32: 0.3373 S33: 0.0075 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8981 37.9349 12.2566 REMARK 3 T TENSOR REMARK 3 T11: 0.2876 T22: 0.2124 REMARK 3 T33: 0.2230 T12: -0.0234 REMARK 3 T13: -0.0316 T23: 0.0372 REMARK 3 L TENSOR REMARK 3 L11: 0.3363 L22: 0.8520 REMARK 3 L33: 1.9669 L12: -0.1277 REMARK 3 L13: -0.3238 L23: -0.8702 REMARK 3 S TENSOR REMARK 3 S11: -0.1858 S12: -0.3275 S13: 0.3232 REMARK 3 S21: -0.7020 S22: -0.0169 S23: 0.2783 REMARK 3 S31: -0.3998 S32: -0.1585 S33: -0.0007 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WAL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203480. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97919 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9666 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 36.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 39.10 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1-2.2M AMMONIUM SULFATE, 0.01M MG REMARK 280 ACETATE, 0.05M MES, PH 5.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXADECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 35600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 52190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -248.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 81.95200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 81.95200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 81.95200 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 81.95200 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 81.95200 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 51.49500 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 81.95200 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 51.49500 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 51.49500 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 81.95200 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 81.95200 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 51.49500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 143 REMARK 465 ARG A 144 REMARK 465 U B 0 REMARK 465 A B 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 145 CB CG CD REMARK 470 THR A 146 OG1 CG2 REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 LYS A 196 CD CE NZ REMARK 470 GLU A 197 CG CD OE1 OE2 REMARK 470 ASN A 200 CB CG OD1 ND2 REMARK 470 SER A 202 CB OG REMARK 470 ASP A 203 CB CG OD1 OD2 REMARK 470 GLN A 248 CG CD OE1 NE2 REMARK 470 GLU A 268 CG CD OE1 OE2 REMARK 470 A B 1 P OP1 OP2 O5' C5' C4' O4' REMARK 470 A B 1 C3' C2' O2' C1' N9 C8 N7 REMARK 470 A B 1 C5 C6 N6 N1 C2 N3 C4 REMARK 470 A B 9 C5' C4' O4' C3' O3' C2' O2' REMARK 470 A B 9 C1' N9 C8 N7 C5 C6 N6 REMARK 470 A B 9 N1 C2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 401 O HOH A 405 1.98 REMARK 500 OD1 ASP A 150 O HOH A 401 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 401 O HOH A 401 7556 1.93 REMARK 500 O HOH A 401 O HOH A 423 7556 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 A B 1 O3' U B 2 P -0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 146 -13.25 71.03 REMARK 500 ASN A 200 84.36 -67.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WAN RELATED DB: PDB DBREF 4WAL A 144 271 UNP Q12186 BBP_YEAST 144 271 DBREF 4WAL B 0 10 PDB 4WAL 4WAL 0 10 SEQADV 4WAL SER A 143 UNP Q12186 EXPRESSION TAG SEQADV 4WAL MSE A 220 UNP Q12186 ILE 220 ENGINEERED MUTATION SEQADV 4WAL MSE A 227 UNP Q12186 ILE 227 ENGINEERED MUTATION SEQADV 4WAL MSE A 238 UNP Q12186 VAL 238 ENGINEERED MUTATION SEQRES 1 A 129 SER ARG PRO THR LYS PHE GLN ASP LYS TYR TYR ILE PRO SEQRES 2 A 129 VAL ASP GLN TYR PRO ASP VAL ASN PHE VAL GLY LEU LEU SEQRES 3 A 129 LEU GLY PRO ARG GLY ARG THR LEU ARG LYS LEU GLN GLU SEQRES 4 A 129 ASP SER ASN CYS LYS ILE ALA ILE ARG GLY ARG GLY SER SEQRES 5 A 129 VAL LYS GLU GLY LYS ASN ALA SER ASP LEU PRO PRO GLY SEQRES 6 A 129 ALA MSE ASN PHE GLU ASP PRO LEU HIS CYS LEU ILE MSE SEQRES 7 A 129 ALA ASP SER GLU ASP LYS MSE GLN LYS GLY ILE LYS VAL SEQRES 8 A 129 CYS GLN ASN ILE MSE ILE LYS ALA VAL THR SER PRO GLU SEQRES 9 A 129 GLY GLN ASN ASP LEU LYS ARG GLY GLN LEU ARG GLU LEU SEQRES 10 A 129 ALA GLU LEU ASN GLY THR LEU ARG GLU ASP ASN ARG SEQRES 1 B 11 U A U A C U A A C A A MODRES 4WAL MSE A 209 MET MODIFIED RESIDUE HET MSE A 209 8 HET MSE A 220 8 HET MSE A 227 8 HET MSE A 238 8 HET SO4 A 301 5 HET GOL A 302 6 HET CL A 303 1 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 SO4 O4 S 2- FORMUL 4 GOL C3 H8 O3 FORMUL 5 CL CL 1- FORMUL 6 HOH *87(H2 O) HELIX 1 AA1 ASN A 163 GLY A 170 1 8 HELIX 2 AA2 GLY A 173 ASN A 184 1 12 HELIX 3 AA3 ASN A 200 LEU A 204 5 5 HELIX 4 AA4 SER A 223 SER A 244 1 22 HELIX 5 AA5 ASN A 249 ASN A 263 1 15 SHEET 1 AA1 3 PHE A 148 TYR A 153 0 SHEET 2 AA1 3 HIS A 216 ALA A 221 -1 O CYS A 217 N TYR A 152 SHEET 3 AA1 3 LYS A 186 ARG A 190 -1 N ALA A 188 O LEU A 218 LINK C ALA A 208 N MSE A 209 1555 1555 1.33 LINK C MSE A 209 N ASN A 210 1555 1555 1.33 LINK C ILE A 219 N MSE A 220 1555 1555 1.33 LINK C MSE A 220 N ALA A 221 1555 1555 1.33 LINK C LYS A 226 N MSE A 227 1555 1555 1.33 LINK C MSE A 227 N GLN A 228 1555 1555 1.33 LINK C ILE A 237 N MSE A 238 1555 1555 1.33 LINK C MSE A 238 N ILE A 239 1555 1555 1.32 CISPEP 1 GLU A 197 GLY A 198 0 -6.75 SITE 1 AC1 6 ARG A 172 ARG A 174 ARG A 177 HOH A 422 SITE 2 AC1 6 HOH A 442 HOH A 460 SITE 1 AC2 5 ILE A 154 VAL A 156 ASP A 157 GLN A 158 SITE 2 AC2 5 HOH A 402 SITE 1 AC3 1 ARG A 271 CRYST1 81.952 81.952 51.495 90.00 90.00 90.00 P 4 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012202 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012202 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019420 0.00000