HEADER DNA-RNA HYBRID 02-SEP-14 4WB2 TITLE CRYSTAL STRUCTURE OF THE MIRROR-IMAGE L-RNA/L-DNA APTAMER NOX-D20 IN TITLE 2 COMPLEX WITH MOUSE C5A COMPLEMENT ANAPHYLATOXIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT C5; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: HEMOLYTIC COMPLEMENT; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MIXED L-RNA/L-DNA MIRROR-IMAGE APTAMER NOX-D20 (40-MER); COMPND 8 CHAIN: D, E; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: ALL DNA AND RNA NUCLEOTIDES OF THE ENTITY ARE IN THE COMPND 11 L-CONFORMATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: C5, HC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SHUFFLE T7 EXPRESS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS PROTEIN-RNA COMPLEX, MIRROR-IMAGE APTAMER, G-QUADRUPLEX, COMPLEMENT KEYWDS 2 ANAPHYLATOXIN, DNA-RNA HYBRID EXPDTA X-RAY DIFFRACTION AUTHOR L.YATIME,C.MAASCH,K.HOEHLIG,S.KLUSSMANN,A.VATER,G.R.ANDERSEN REVDAT 3 26-JUL-23 4WB2 1 SEQRES LINK REVDAT 2 17-JAN-18 4WB2 1 REMARK REVDAT 1 06-MAY-15 4WB2 0 JRNL AUTH L.YATIME,C.MAASCH,K.HOEHLIG,S.KLUSSMANN,G.R.ANDERSEN,A.VATER JRNL TITL STRUCTURAL BASIS FOR THE TARGETING OF COMPLEMENT JRNL TITL 2 ANAPHYLATOXIN C5A USING A MIXED L-RNA/L-DNA APTAMER. JRNL REF NAT COMMUN V. 6 6481 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 25901944 JRNL DOI 10.1038/NCOMMS7481 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1702) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 56027 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2853 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.8846 - 4.8821 0.99 2965 158 0.1527 0.1622 REMARK 3 2 4.8821 - 3.8765 1.00 2780 156 0.1378 0.1557 REMARK 3 3 3.8765 - 3.3869 1.00 2798 150 0.1384 0.1656 REMARK 3 4 3.3869 - 3.0775 0.99 2721 138 0.1541 0.1793 REMARK 3 5 3.0775 - 2.8570 0.98 2681 157 0.1644 0.1965 REMARK 3 6 2.8570 - 2.6886 0.98 2697 147 0.1826 0.1949 REMARK 3 7 2.6886 - 2.5540 0.98 2689 127 0.1813 0.2237 REMARK 3 8 2.5540 - 2.4428 0.98 2665 134 0.1846 0.2319 REMARK 3 9 2.4428 - 2.3488 0.98 2652 167 0.1789 0.2151 REMARK 3 10 2.3488 - 2.2678 0.98 2661 143 0.1774 0.2107 REMARK 3 11 2.2678 - 2.1969 0.97 2581 151 0.1768 0.2181 REMARK 3 12 2.1969 - 2.1341 0.97 2647 135 0.1793 0.2083 REMARK 3 13 2.1341 - 2.0779 0.97 2604 142 0.1853 0.1948 REMARK 3 14 2.0779 - 2.0272 0.97 2624 118 0.1954 0.2377 REMARK 3 15 2.0272 - 1.9811 0.96 2581 132 0.2002 0.2223 REMARK 3 16 1.9811 - 1.9390 0.97 2611 139 0.2056 0.2451 REMARK 3 17 1.9390 - 1.9002 0.95 2584 145 0.2123 0.2325 REMARK 3 18 1.9002 - 1.8643 0.96 2527 149 0.2108 0.2463 REMARK 3 19 1.8643 - 1.8311 0.95 2560 140 0.2295 0.2437 REMARK 3 20 1.8311 - 1.8000 0.95 2546 125 0.2512 0.2845 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3742 REMARK 3 ANGLE : 1.366 5434 REMARK 3 CHIRALITY : 0.062 568 REMARK 3 PLANARITY : 0.006 406 REMARK 3 DIHEDRAL : 43.303 1658 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -3.9830 22.7943 39.3982 REMARK 3 T TENSOR REMARK 3 T11: 0.2488 T22: 0.2226 REMARK 3 T33: 0.1579 T12: -0.0859 REMARK 3 T13: 0.0306 T23: -0.0458 REMARK 3 L TENSOR REMARK 3 L11: 4.1331 L22: 2.8668 REMARK 3 L33: 2.3071 L12: -1.0871 REMARK 3 L13: 0.1216 L23: 0.4973 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: -0.4368 S13: 0.1571 REMARK 3 S21: 0.4935 S22: 0.0121 S23: 0.0299 REMARK 3 S31: 0.0318 S32: 0.0631 S33: -0.0059 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 13.0384 6.8525 33.7525 REMARK 3 T TENSOR REMARK 3 T11: 0.1936 T22: 0.2510 REMARK 3 T33: 0.1992 T12: -0.0824 REMARK 3 T13: 0.0097 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 3.6422 L22: 5.0634 REMARK 3 L33: 2.4533 L12: 0.3006 REMARK 3 L13: 0.9231 L23: 0.8787 REMARK 3 S TENSOR REMARK 3 S11: -0.0523 S12: -0.1583 S13: 0.2320 REMARK 3 S21: 0.1460 S22: 0.1445 S23: -0.4817 REMARK 3 S31: -0.3233 S32: 0.3118 S33: -0.0807 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -22.9485 57.9292 1.5107 REMARK 3 T TENSOR REMARK 3 T11: 0.4345 T22: 0.3147 REMARK 3 T33: 0.3937 T12: 0.0905 REMARK 3 T13: 0.0121 T23: 0.0871 REMARK 3 L TENSOR REMARK 3 L11: 3.4681 L22: 4.6762 REMARK 3 L33: 1.7773 L12: -1.1809 REMARK 3 L13: 0.9415 L23: -1.6916 REMARK 3 S TENSOR REMARK 3 S11: 0.1202 S12: 0.0636 S13: 0.1372 REMARK 3 S21: -0.5326 S22: 0.2119 S23: 0.7107 REMARK 3 S31: -0.3892 S32: -0.5727 S33: -0.2977 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D AND RESID 1:40 REMARK 3 ORIGIN FOR THE GROUP (A): -11.7641 21.1244 24.7660 REMARK 3 T TENSOR REMARK 3 T11: 0.1255 T22: 0.1750 REMARK 3 T33: 0.1948 T12: -0.0259 REMARK 3 T13: -0.0033 T23: 0.0387 REMARK 3 L TENSOR REMARK 3 L11: 2.1263 L22: 2.7087 REMARK 3 L33: 1.8418 L12: 1.0162 REMARK 3 L13: 0.0372 L23: 0.4466 REMARK 3 S TENSOR REMARK 3 S11: 0.0250 S12: 0.1406 S13: 0.3081 REMARK 3 S21: -0.0581 S22: -0.0168 S23: 0.3368 REMARK 3 S31: -0.0695 S32: -0.1887 S33: -0.0003 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN E AND RESID 1:40 REMARK 3 ORIGIN FOR THE GROUP (A): -6.3825 53.8220 6.7539 REMARK 3 T TENSOR REMARK 3 T11: 0.3286 T22: 0.1932 REMARK 3 T33: 0.2595 T12: -0.0288 REMARK 3 T13: 0.0076 T23: 0.0608 REMARK 3 L TENSOR REMARK 3 L11: 2.6480 L22: 3.4548 REMARK 3 L33: 2.6872 L12: 0.6862 REMARK 3 L13: -0.1939 L23: -0.4350 REMARK 3 S TENSOR REMARK 3 S11: 0.0314 S12: -0.0930 S13: 0.0095 REMARK 3 S21: 0.1450 S22: -0.0294 S23: -0.3017 REMARK 3 S31: -0.4291 S32: 0.1089 S33: -0.0342 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WB2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-13; 16-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : MAX II; MAX II REMARK 200 BEAMLINE : I911-3; I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91; 1.1403 REMARK 200 MONOCHROMATOR : SI(111); SI(111) REMARK 200 OPTICS : NULL; DATASET FOR SAD PHASING REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD; MARMOSAIC REMARK 200 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57409 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 21.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NACL, 0.1 M NA CACODYLATE PH REMARK 280 6.0, 8% (W/V) PEG 8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 23.23500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 141.12700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.23500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 141.12700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 918 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 924 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 677 REMARK 465 PRO A 747 REMARK 465 HIS A 748 REMARK 465 LYS A 749 REMARK 465 PRO A 750 REMARK 465 VAL A 751 REMARK 465 GLN A 752 REMARK 465 LEU A 753 REMARK 465 GLY A 754 REMARK 465 ARG A 755 REMARK 465 GLY B 677 REMARK 465 ALA B 678 REMARK 465 ASN B 679 REMARK 465 LEU B 680 REMARK 465 HIS B 748 REMARK 465 LYS B 749 REMARK 465 PRO B 750 REMARK 465 VAL B 751 REMARK 465 GLN B 752 REMARK 465 LEU B 753 REMARK 465 GLY B 754 REMARK 465 ARG B 755 REMARK 465 VAL C 751 REMARK 465 GLN C 752 REMARK 465 LEU C 753 REMARK 465 GLY C 754 REMARK 465 ARG C 755 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 290 O HOH D 311 2.18 REMARK 500 OE2 GLU A 745 O HOH A 901 2.19 REMARK 500 O HOH E 314 O HOH E 329 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 0G D 1 C4 0G D 1 C5 0.091 REMARK 500 0G D 1 C5 0G D 1 C6 0.064 REMARK 500 0G D 1 C6 0G D 1 N1 -0.049 REMARK 500 0G D 1 C5 0G D 1 N7 -0.041 REMARK 500 0G D 1 N7 0G D 1 C8 0.053 REMARK 500 0C D 2 C5 0C D 2 C6 0.053 REMARK 500 0G D 3 C4 0G D 3 C5 0.083 REMARK 500 0G D 3 C6 0G D 3 N1 -0.045 REMARK 500 0G D 3 C5 0G D 3 N7 -0.042 REMARK 500 0G D 3 N7 0G D 3 C8 0.054 REMARK 500 0G D 3 N9 0G D 3 C4 -0.050 REMARK 500 0A D 4 C4 0A D 4 C5 0.084 REMARK 500 0A D 4 C5 0A D 4 C6 0.068 REMARK 500 0A D 4 C5 0A D 4 N7 -0.037 REMARK 500 0A D 4 N7 0A D 4 C8 0.048 REMARK 500 0A D 4 N9 0A D 4 C4 -0.050 REMARK 500 0G D 6 C4 0G D 6 C5 0.079 REMARK 500 0G D 6 C5 0G D 6 C6 0.063 REMARK 500 0G D 6 C6 0G D 6 N1 -0.049 REMARK 500 0G D 6 C5 0G D 6 N7 -0.041 REMARK 500 0G D 6 N7 0G D 6 C8 0.056 REMARK 500 0G D 6 N9 0G D 6 C4 -0.056 REMARK 500 0G D 8 C4 0G D 8 C5 0.085 REMARK 500 0G D 8 C6 0G D 8 N1 -0.051 REMARK 500 0G D 8 C5 0G D 8 N7 -0.042 REMARK 500 0G D 8 N7 0G D 8 C8 0.055 REMARK 500 0G D 9 C4 0G D 9 C5 0.087 REMARK 500 0G D 9 C6 0G D 9 N1 -0.052 REMARK 500 0G D 9 C5 0G D 9 N7 -0.043 REMARK 500 0G D 9 N7 0G D 9 C8 0.054 REMARK 500 0U D 10 C5 0U D 10 C6 0.055 REMARK 500 0G D 11 C4 0G D 11 C5 0.094 REMARK 500 0G D 11 C5 0G D 11 C6 0.063 REMARK 500 0G D 11 C6 0G D 11 N1 -0.049 REMARK 500 0G D 11 C5 0G D 11 N7 -0.039 REMARK 500 0G D 11 N7 0G D 11 C8 0.053 REMARK 500 0G D 12 C4 0G D 12 C5 0.082 REMARK 500 0G D 12 C6 0G D 12 N1 -0.047 REMARK 500 0G D 12 C5 0G D 12 N7 -0.038 REMARK 500 0G D 12 N7 0G D 12 C8 0.052 REMARK 500 0G D 12 N9 0G D 12 C4 -0.052 REMARK 500 0DG D 14 C4 0DG D 14 C5 0.090 REMARK 500 0DG D 14 C6 0DG D 14 N1 -0.047 REMARK 500 0DG D 14 C5 0DG D 14 N7 -0.038 REMARK 500 0DG D 14 N7 0DG D 14 C8 0.052 REMARK 500 0A D 16 C4 0A D 16 C5 0.083 REMARK 500 0A D 16 C5 0A D 16 C6 0.072 REMARK 500 0A D 16 C5 0A D 16 N7 -0.041 REMARK 500 0A D 16 N7 0A D 16 C8 0.047 REMARK 500 0A D 16 N9 0A D 16 C4 -0.051 REMARK 500 REMARK 500 THIS ENTRY HAS 234 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 0G D 1 C2 - N3 - C4 ANGL. DEV. = 9.0 DEGREES REMARK 500 0G D 1 N3 - C4 - C5 ANGL. DEV. = -9.9 DEGREES REMARK 500 0G D 1 C5 - C6 - N1 ANGL. DEV. = 6.4 DEGREES REMARK 500 0G D 1 C4 - C5 - N7 ANGL. DEV. = -4.4 DEGREES REMARK 500 0G D 1 C5 - N7 - C8 ANGL. DEV. = 3.4 DEGREES REMARK 500 0G D 1 N3 - C4 - N9 ANGL. DEV. = 8.8 DEGREES REMARK 500 0G D 1 C6 - C5 - N7 ANGL. DEV. = 5.9 DEGREES REMARK 500 0G D 1 C5 - C6 - O6 ANGL. DEV. = -7.8 DEGREES REMARK 500 0G D 3 C2 - N3 - C4 ANGL. DEV. = 8.7 DEGREES REMARK 500 0G D 3 N3 - C4 - C5 ANGL. DEV. = -8.7 DEGREES REMARK 500 0G D 3 C5 - C6 - N1 ANGL. DEV. = 6.7 DEGREES REMARK 500 0G D 3 C4 - C5 - N7 ANGL. DEV. = -4.0 DEGREES REMARK 500 0G D 3 C5 - N7 - C8 ANGL. DEV. = 3.0 DEGREES REMARK 500 0G D 3 C8 - N9 - C4 ANGL. DEV. = 3.0 DEGREES REMARK 500 0G D 3 N3 - C4 - N9 ANGL. DEV. = 8.1 DEGREES REMARK 500 0G D 3 C6 - C5 - N7 ANGL. DEV. = 6.3 DEGREES REMARK 500 0G D 3 C5 - C6 - O6 ANGL. DEV. = -8.8 DEGREES REMARK 500 0A D 4 N1 - C2 - N3 ANGL. DEV. = -5.4 DEGREES REMARK 500 0A D 4 C2 - N3 - C4 ANGL. DEV. = 8.9 DEGREES REMARK 500 0A D 4 N3 - C4 - C5 ANGL. DEV. = -6.8 DEGREES REMARK 500 0A D 4 C4 - C5 - N7 ANGL. DEV. = -3.5 DEGREES REMARK 500 0A D 4 C5 - N7 - C8 ANGL. DEV. = 3.1 DEGREES REMARK 500 0A D 4 N7 - C8 - N9 ANGL. DEV. = -3.3 DEGREES REMARK 500 0A D 4 C8 - N9 - C4 ANGL. DEV. = 3.9 DEGREES REMARK 500 0A D 4 N3 - C4 - N9 ANGL. DEV. = 6.9 DEGREES REMARK 500 0U D 5 N1 - C2 - N3 ANGL. DEV. = 5.4 DEGREES REMARK 500 0U D 5 C2 - N3 - C4 ANGL. DEV. = -6.4 DEGREES REMARK 500 0U D 5 N3 - C4 - C5 ANGL. DEV. = 5.9 DEGREES REMARK 500 0U D 5 C5 - C4 - O4 ANGL. DEV. = -6.0 DEGREES REMARK 500 0G D 6 C2 - N3 - C4 ANGL. DEV. = 8.2 DEGREES REMARK 500 0G D 6 N3 - C4 - C5 ANGL. DEV. = -8.0 DEGREES REMARK 500 0G D 6 C5 - C6 - N1 ANGL. DEV. = 6.2 DEGREES REMARK 500 0G D 6 C4 - C5 - N7 ANGL. DEV. = -4.3 DEGREES REMARK 500 0G D 6 C5 - N7 - C8 ANGL. DEV. = 3.3 DEGREES REMARK 500 0G D 6 N7 - C8 - N9 ANGL. DEV. = -3.2 DEGREES REMARK 500 0G D 6 C8 - N9 - C4 ANGL. DEV. = 3.1 DEGREES REMARK 500 0G D 6 N3 - C4 - N9 ANGL. DEV. = 6.9 DEGREES REMARK 500 0G D 6 C6 - C5 - N7 ANGL. DEV. = 6.7 DEGREES REMARK 500 0G D 6 C5 - C6 - O6 ANGL. DEV. = -8.2 DEGREES REMARK 500 0G D 8 C2 - N3 - C4 ANGL. DEV. = 9.5 DEGREES REMARK 500 0G D 8 N3 - C4 - C5 ANGL. DEV. = -10.2 DEGREES REMARK 500 0G D 8 C5 - C6 - N1 ANGL. DEV. = 7.3 DEGREES REMARK 500 0G D 8 C4 - C5 - N7 ANGL. DEV. = -3.4 DEGREES REMARK 500 0G D 8 N3 - C4 - N9 ANGL. DEV. = 9.7 DEGREES REMARK 500 0G D 8 C6 - C5 - N7 ANGL. DEV. = 5.2 DEGREES REMARK 500 0G D 8 C5 - C6 - O6 ANGL. DEV. = -9.4 DEGREES REMARK 500 0G D 9 C2 - N3 - C4 ANGL. DEV. = 8.8 DEGREES REMARK 500 0G D 9 N3 - C4 - C5 ANGL. DEV. = -9.6 DEGREES REMARK 500 0G D 9 C5 - C6 - N1 ANGL. DEV. = 6.9 DEGREES REMARK 500 0G D 9 C4 - C5 - N7 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 449 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 710 37.77 -157.43 REMARK 500 ASN A 710 25.85 -153.28 REMARK 500 PHE A 711 -144.04 -122.71 REMARK 500 PHE A 711 -144.04 -106.28 REMARK 500 ILE C 724 -159.36 -85.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 953 DISTANCE = 6.44 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 802 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 705 OD2 REMARK 620 2 0U D 5 OP2 74.1 REMARK 620 3 0G D 6 OP1 132.3 73.3 REMARK 620 4 0G D 32 OP2 89.7 84.3 120.3 REMARK 620 5 HOH D 247 O 77.7 147.0 139.6 78.8 REMARK 620 6 HOH D 248 O 149.1 136.2 73.7 88.2 71.7 REMARK 620 7 HOH D 256 O 86.1 118.0 79.6 154.9 76.1 82.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 802 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 705 OD2 REMARK 620 2 0U E 5 OP1 76.1 REMARK 620 3 0G E 6 OP1 116.2 99.8 REMARK 620 4 0G E 32 OP2 109.0 69.3 129.1 REMARK 620 5 HOH E 226 O 74.4 146.1 107.9 105.4 REMARK 620 6 HOH E 229 O 146.5 134.9 76.2 78.8 72.1 REMARK 620 7 HOH E 241 O 86.9 116.5 37.4 164.0 78.1 87.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 0U D 5 OP1 REMARK 620 2 0G D 32 OP1 91.3 REMARK 620 3 HOH D 249 O 173.6 88.2 REMARK 620 4 HOH D 250 O 91.1 84.5 95.2 REMARK 620 5 HOH D 259 O 95.5 165.3 86.5 82.3 REMARK 620 6 HOH D 315 O 87.3 104.8 86.6 170.6 88.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 0G D 17 O6 REMARK 620 2 0G D 18 O6 78.4 REMARK 620 3 0G D 19 O6 75.0 75.2 REMARK 620 4 0G D 22 O6 147.9 72.7 84.3 REMARK 620 5 0G D 25 O6 115.8 135.6 69.4 77.9 REMARK 620 6 0G D 26 O6 137.1 123.1 142.0 72.6 76.5 REMARK 620 7 0G D 27 O6 70.8 143.8 113.2 141.1 76.7 73.1 REMARK 620 8 0G D 32 O6 75.8 74.9 141.6 108.9 147.4 75.6 79.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 0C D 34 OP2 REMARK 620 2 HOH D 261 O 76.5 REMARK 620 3 HOH D 262 O 137.5 79.6 REMARK 620 4 HOH D 267 O 155.5 102.9 64.5 REMARK 620 5 HOH D 270 O 84.2 115.8 75.3 116.7 REMARK 620 6 HOH D 272 O 85.9 81.1 124.3 70.0 157.6 REMARK 620 7 HOH D 297 O 88.9 158.6 121.2 83.9 77.5 82.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 0U E 5 OP2 REMARK 620 2 0G E 32 OP1 71.3 REMARK 620 3 HOH E 224 O 92.5 118.3 REMARK 620 4 HOH E 225 O 89.7 73.9 167.6 REMARK 620 5 HOH E 227 O 168.9 103.0 98.6 79.5 REMARK 620 6 HOH E 230 O 95.4 156.3 80.8 86.8 86.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 0G E 17 O6 REMARK 620 2 0G E 18 O6 77.7 REMARK 620 3 0G E 19 O6 76.8 74.3 REMARK 620 4 0G E 22 O6 148.4 73.5 83.0 REMARK 620 5 0G E 25 O6 117.8 135.8 70.5 76.5 REMARK 620 6 0G E 26 O6 136.2 124.5 141.3 73.0 74.6 REMARK 620 7 0G E 27 O6 69.9 145.0 109.9 140.8 73.8 74.9 REMARK 620 8 0G E 32 O6 77.8 75.7 144.0 107.1 145.1 73.5 84.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 0C E 34 OP1 REMARK 620 2 HOH E 236 O 150.1 REMARK 620 3 HOH E 243 O 83.7 68.9 REMARK 620 4 HOH E 246 O 142.1 67.0 123.7 REMARK 620 5 HOH E 258 O 80.7 81.5 76.4 127.6 REMARK 620 6 HOH E 261 O 79.9 107.8 84.3 77.9 153.9 REMARK 620 7 HOH E 265 O 84.7 115.2 154.4 78.1 79.3 116.0 REMARK 620 N 1 2 3 4 5 6 DBREF 4WB2 A 679 755 UNP P06684 CO5_MOUSE 679 755 DBREF 4WB2 B 679 755 UNP P06684 CO5_MOUSE 679 755 DBREF 4WB2 C 679 755 UNP P06684 CO5_MOUSE 679 755 DBREF 4WB2 D 1 40 PDB 4WB2 4WB2 1 40 DBREF 4WB2 E 1 40 PDB 4WB2 4WB2 1 40 SEQADV 4WB2 GLY A 677 UNP P06684 EXPRESSION TAG SEQADV 4WB2 ALA A 678 UNP P06684 EXPRESSION TAG SEQADV 4WB2 GLY B 677 UNP P06684 EXPRESSION TAG SEQADV 4WB2 ALA B 678 UNP P06684 EXPRESSION TAG SEQADV 4WB2 GLY C 677 UNP P06684 EXPRESSION TAG SEQADV 4WB2 ALA C 678 UNP P06684 EXPRESSION TAG SEQRES 1 A 79 GLY ALA ASN LEU HIS LEU LEU ARG GLN LYS ILE GLU GLU SEQRES 2 A 79 GLN ALA ALA LYS TYR LYS HIS SER VAL PRO LYS LYS CYS SEQRES 3 A 79 CYS TYR ASP GLY ALA ARG VAL ASN PHE TYR GLU THR CYS SEQRES 4 A 79 GLU GLU ARG VAL ALA ARG VAL THR ILE GLY PRO LEU CYS SEQRES 5 A 79 ILE ARG ALA PHE ASN GLU CYS CYS THR ILE ALA ASN LYS SEQRES 6 A 79 ILE ARG LYS GLU SER PRO HIS LYS PRO VAL GLN LEU GLY SEQRES 7 A 79 ARG SEQRES 1 B 79 GLY ALA ASN LEU HIS LEU LEU ARG GLN LYS ILE GLU GLU SEQRES 2 B 79 GLN ALA ALA LYS TYR LYS HIS SER VAL PRO LYS LYS CYS SEQRES 3 B 79 CYS TYR ASP GLY ALA ARG VAL ASN PHE TYR GLU THR CYS SEQRES 4 B 79 GLU GLU ARG VAL ALA ARG VAL THR ILE GLY PRO LEU CYS SEQRES 5 B 79 ILE ARG ALA PHE ASN GLU CYS CYS THR ILE ALA ASN LYS SEQRES 6 B 79 ILE ARG LYS GLU SER PRO HIS LYS PRO VAL GLN LEU GLY SEQRES 7 B 79 ARG SEQRES 1 C 79 GLY ALA ASN LEU HIS LEU LEU ARG GLN LYS ILE GLU GLU SEQRES 2 C 79 GLN ALA ALA LYS TYR LYS HIS SER VAL PRO LYS LYS CYS SEQRES 3 C 79 CYS TYR ASP GLY ALA ARG VAL ASN PHE TYR GLU THR CYS SEQRES 4 C 79 GLU GLU ARG VAL ALA ARG VAL THR ILE GLY PRO LEU CYS SEQRES 5 C 79 ILE ARG ALA PHE ASN GLU CYS CYS THR ILE ALA ASN LYS SEQRES 6 C 79 ILE ARG LYS GLU SER PRO HIS LYS PRO VAL GLN LEU GLY SEQRES 7 C 79 ARG SEQRES 1 D 40 0G 0C 0G 0A 0U 0G 3KA 0G 0G 0U 0G 0G 0U SEQRES 2 D 40 0DG 0DA 0A 0G 0G 0G 0U 0U 0G 0U 0U 0G 0G SEQRES 3 D 40 0G 3KA 0G 3KA 0C 0G 0A 0C 0G 0C 0A 0DC 0G SEQRES 4 D 40 0C SEQRES 1 E 40 0G 0C 0G 0A 0U 0G 3KA 0G 0G 0U 0G 0G 0U SEQRES 2 E 40 0DG 0DA 0A 0G 0G 0G 0U 0U 0G 0U 0U 0G 0G SEQRES 3 E 40 0G 3KA 0G 3KA 0C 0G 0A 0C 0G 0C 0A 0DC 0G SEQRES 4 E 40 0C HET 0G D 1 20 HET 0C D 2 20 HET 0G D 3 23 HET 0A D 4 22 HET 0U D 5 20 HET 0G D 6 23 HET 3KA D 7 19 HET 0G D 8 23 HET 0G D 9 23 HET 0U D 10 20 HET 0G D 11 23 HET 0G D 12 23 HET 0U D 13 20 HET 0DG D 14 22 HET 0DA D 15 21 HET 0A D 16 22 HET 0G D 17 23 HET 0G D 18 23 HET 0G D 19 23 HET 0U D 20 20 HET 0U D 21 20 HET 0G D 22 23 HET 0U D 23 20 HET 0U D 24 20 HET 0G D 25 23 HET 0G D 26 23 HET 0G D 27 23 HET 3KA D 28 19 HET 0G D 29 23 HET 3KA D 30 19 HET 0C D 31 20 HET 0G D 32 23 HET 0A D 33 22 HET 0C D 34 20 HET 0G D 35 23 HET 0C D 36 20 HET 0A D 37 22 HET 0DC D 38 19 HET 0G D 39 23 HET 0C D 40 20 HET 0G E 1 20 HET 0C E 2 20 HET 0G E 3 23 HET 0A E 4 22 HET 0U E 5 20 HET 0G E 6 23 HET 3KA E 7 19 HET 0G E 8 23 HET 0G E 9 23 HET 0U E 10 20 HET 0G E 11 23 HET 0G E 12 23 HET 0U E 13 20 HET 0DG E 14 22 HET 0DA E 15 21 HET 0A E 16 22 HET 0G E 17 23 HET 0G E 18 23 HET 0G E 19 23 HET 0U E 20 20 HET 0U E 21 20 HET 0G E 22 23 HET 0U E 23 20 HET 0U E 24 20 HET 0G E 25 23 HET 0G E 26 23 HET 0G E 27 23 HET 3KA E 28 19 HET 0G E 29 23 HET 3KA E 30 19 HET 0C E 31 20 HET 0G E 32 23 HET 0A E 33 22 HET 0C E 34 20 HET 0G E 35 23 HET 0C E 36 20 HET 0A E 37 22 HET 0DC E 38 19 HET 0G E 39 23 HET 0C E 40 20 HET ACT A 801 4 HET CA A 802 1 HET ACT B 801 4 HET ACT B 802 4 HET ACT C 801 4 HET CA C 802 1 HET CA D 101 1 HET CA D 102 1 HET MG D 103 1 HET ACT D 104 4 HET CA E 101 1 HET CA E 102 1 HET MG E 103 1 HET ACT E 104 4 HETNAM 0G L-GUANOSINE-5'-MONOPHOSPHATE HETNAM 0C L-CYTIDINE-5'-MONOPHOSPHATE HETNAM 0A L-ADENOSINE-5'-MONOPHOSPHATE HETNAM 0U L-URIDINE-5'-MONOPHOSPHATE HETNAM 3KA 1-(2-DEOXY-5-O-PHOSPHONO-BETA-L-ERYTHRO- HETNAM 2 3KA PENTOFURANOSYL)PYRIMIDINE-2,4(1H,3H)-DIONE HETNAM 0DG 2'-DEOXY-L-RIBO-FURANOSYL GUANINE-5'-MONOPHOSPHATE HETNAM 0DA 2'-DEOXY-L-RIBO-FURANOSYL ADENOSINE-5'-MONOPHOSPHATE HETNAM 0DC 2'-DEOXY-L-RIBO-FURANOSYL CYTOSINE-5'-MONOPHOSPHATE HETNAM ACT ACETATE ION HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETSYN 3KA L-2'-DEOXYURIDINE-5'-MONOPHOSPHATE FORMUL 4 0G 36(C10 H14 N5 O8 P) FORMUL 4 0C 10(C9 H14 N3 O8 P) FORMUL 4 0A 8(C10 H14 N5 O7 P) FORMUL 4 0U 14(C9 H13 N2 O9 P) FORMUL 4 3KA 6(C9 H13 N2 O8 P) FORMUL 4 0DG 2(C10 H14 N5 O7 P) FORMUL 4 0DA 2(C10 H14 N5 O6 P) FORMUL 4 0DC 2(C9 H14 N3 O7 P) FORMUL 6 ACT 6(C2 H3 O2 1-) FORMUL 7 CA 6(CA 2+) FORMUL 14 MG 2(MG 2+) FORMUL 20 HOH *508(H2 O) HELIX 1 AA1 ASN A 679 ALA A 692 1 14 HELIX 2 AA2 HIS A 696 ARG A 708 1 13 HELIX 3 AA3 THR A 714 ALA A 720 1 7 HELIX 4 AA4 GLY A 725 GLU A 745 1 21 HELIX 5 AA5 LEU B 682 ALA B 692 1 11 HELIX 6 AA6 HIS B 696 ARG B 708 1 13 HELIX 7 AA7 THR B 714 ALA B 720 1 7 HELIX 8 AA8 GLY B 725 GLU B 745 1 21 HELIX 9 AA9 ASN C 679 ALA C 692 1 14 HELIX 10 AB1 HIS C 696 ALA C 707 1 12 HELIX 11 AB2 THR C 714 ALA C 720 1 7 HELIX 12 AB3 GLY C 725 GLU C 745 1 21 SSBOND 1 CYS A 702 CYS A 728 1555 1555 2.04 SSBOND 2 CYS A 703 CYS A 735 1555 1555 2.03 SSBOND 3 CYS A 715 CYS A 736 1555 1555 2.04 SSBOND 4 CYS B 702 CYS B 728 1555 1555 2.04 SSBOND 5 CYS B 703 CYS B 735 1555 1555 2.02 SSBOND 6 CYS B 715 CYS B 736 1555 1555 2.03 SSBOND 7 CYS C 702 CYS C 728 1555 1555 2.03 SSBOND 8 CYS C 703 CYS C 735 1555 1555 2.03 SSBOND 9 CYS C 715 CYS C 736 1555 1555 2.04 LINK O3' 0G D 1 P 0C D 2 1555 1555 1.60 LINK O3' 0C D 2 P 0G D 3 1555 1555 1.61 LINK O3' 0G D 3 P 0A D 4 1555 1555 1.61 LINK O3' 0A D 4 P 0U D 5 1555 1555 1.60 LINK O3' 0U D 5 P 0G D 6 1555 1555 1.61 LINK O3' 0G D 6 P 3KA D 7 1555 1555 1.60 LINK O3' 3KA D 7 P 0G D 8 1555 1555 1.62 LINK O3' 0G D 8 P 0G D 9 1555 1555 1.60 LINK O3' 0G D 9 P 0U D 10 1555 1555 1.61 LINK O3' 0U D 10 P 0G D 11 1555 1555 1.60 LINK O3' 0G D 11 P 0G D 12 1555 1555 1.60 LINK O3' 0G D 12 P 0U D 13 1555 1555 1.60 LINK O3' 0U D 13 P 0DG D 14 1555 1555 1.60 LINK O3' 0DG D 14 P 0DA D 15 1555 1555 1.62 LINK O3' 0DA D 15 P 0A D 16 1555 1555 1.61 LINK O3' 0A D 16 P 0G D 17 1555 1555 1.61 LINK O3' 0G D 17 P 0G D 18 1555 1555 1.62 LINK O3' 0G D 18 P 0G D 19 1555 1555 1.60 LINK O3' 0G D 19 P 0U D 20 1555 1555 1.60 LINK O3' 0U D 20 P 0U D 21 1555 1555 1.61 LINK O3' 0U D 21 P 0G D 22 1555 1555 1.61 LINK O3' 0G D 22 P 0U D 23 1555 1555 1.60 LINK O3' 0U D 23 P 0U D 24 1555 1555 1.61 LINK O3' 0U D 24 P 0G D 25 1555 1555 1.60 LINK O3' 0G D 25 P 0G D 26 1555 1555 1.61 LINK O3' 0G D 26 P 0G D 27 1555 1555 1.61 LINK O3' 0G D 27 P 3KA D 28 1555 1555 1.61 LINK O3' 3KA D 28 P 0G D 29 1555 1555 1.61 LINK O3' 0G D 29 P 3KA D 30 1555 1555 1.61 LINK O3' 3KA D 30 P 0C D 31 1555 1555 1.61 LINK O3' 0C D 31 P 0G D 32 1555 1555 1.61 LINK O3' 0G D 32 P 0A D 33 1555 1555 1.60 LINK O3' 0A D 33 P 0C D 34 1555 1555 1.61 LINK O3' 0C D 34 P 0G D 35 1555 1555 1.61 LINK O3' 0G D 35 P 0C D 36 1555 1555 1.60 LINK O3' 0C D 36 P 0A D 37 1555 1555 1.60 LINK O3' 0A D 37 P 0DC D 38 1555 1555 1.61 LINK O3' 0DC D 38 P 0G D 39 1555 1555 1.61 LINK O3' 0G D 39 P 0C D 40 1555 1555 1.60 LINK O3' 0G E 1 P 0C E 2 1555 1555 1.61 LINK O3' 0C E 2 P 0G E 3 1555 1555 1.61 LINK O3' 0G E 3 P 0A E 4 1555 1555 1.61 LINK O3' 0A E 4 P 0U E 5 1555 1555 1.60 LINK O3' 0U E 5 P 0G E 6 1555 1555 1.61 LINK O3' 0G E 6 P 3KA E 7 1555 1555 1.61 LINK O3' 3KA E 7 P 0G E 8 1555 1555 1.61 LINK O3' 0G E 8 P 0G E 9 1555 1555 1.61 LINK O3' 0G E 9 P 0U E 10 1555 1555 1.62 LINK O3' 0U E 10 P 0G E 11 1555 1555 1.61 LINK O3' 0G E 11 P 0G E 12 1555 1555 1.60 LINK O3' 0G E 12 P 0U E 13 1555 1555 1.60 LINK O3' 0U E 13 P 0DG E 14 1555 1555 1.61 LINK O3' 0DG E 14 P 0DA E 15 1555 1555 1.61 LINK O3' 0DA E 15 P 0A E 16 1555 1555 1.61 LINK O3' 0A E 16 P 0G E 17 1555 1555 1.61 LINK O3' 0G E 17 P 0G E 18 1555 1555 1.61 LINK O3' 0G E 18 P 0G E 19 1555 1555 1.62 LINK O3' 0G E 19 P 0U E 20 1555 1555 1.60 LINK O3' 0U E 20 P 0U E 21 1555 1555 1.60 LINK O3' 0U E 21 P 0G E 22 1555 1555 1.61 LINK O3' 0G E 22 P 0U E 23 1555 1555 1.60 LINK O3' 0U E 23 P 0U E 24 1555 1555 1.60 LINK O3' 0U E 24 P 0G E 25 1555 1555 1.61 LINK O3' 0G E 25 P 0G E 26 1555 1555 1.61 LINK O3' 0G E 26 P 0G E 27 1555 1555 1.61 LINK O3' 0G E 27 P 3KA E 28 1555 1555 1.61 LINK O3' 3KA E 28 P 0G E 29 1555 1555 1.60 LINK O3' 0G E 29 P 3KA E 30 1555 1555 1.61 LINK O3' 3KA E 30 P 0C E 31 1555 1555 1.60 LINK O3' 0C E 31 P 0G E 32 1555 1555 1.61 LINK O3' 0G E 32 P 0A E 33 1555 1555 1.61 LINK O3' 0A E 33 P 0C E 34 1555 1555 1.61 LINK O3' 0C E 34 P 0G E 35 1555 1555 1.61 LINK O3' 0G E 35 P 0C E 36 1555 1555 1.60 LINK O3' 0C E 36 P 0A E 37 1555 1555 1.61 LINK O3' 0A E 37 P 0DC E 38 1555 1555 1.61 LINK O3' 0DC E 38 P 0G E 39 1555 1555 1.60 LINK O3' 0G E 39 P 0C E 40 1555 1555 1.61 LINK OD2 ASP A 705 CA CA A 802 1555 1555 2.50 LINK CA CA A 802 OP2 0U D 5 1555 1555 2.34 LINK CA CA A 802 OP1 0G D 6 1555 1555 2.49 LINK CA CA A 802 OP2 0G D 32 1555 1555 2.26 LINK CA CA A 802 O HOH D 247 1555 1555 2.52 LINK CA CA A 802 O HOH D 248 1555 1555 2.61 LINK CA CA A 802 O HOH D 256 1555 1555 2.46 LINK OD2 ASP C 705 CA CA C 802 1555 1555 2.45 LINK CA CA C 802 OP1 0U E 5 1555 1555 2.39 LINK CA CA C 802 OP1 0G E 6 1555 1555 3.95 LINK CA CA C 802 OP2 0G E 32 1555 1555 4.31 LINK CA CA C 802 O HOH E 226 1555 1555 2.54 LINK CA CA C 802 O HOH E 229 1555 1555 2.46 LINK CA CA C 802 O HOH E 241 1555 1555 2.35 LINK OP1 0U D 5 MG MG D 103 1555 1555 2.01 LINK O6 0G D 17 CA CA D 101 1555 1555 2.59 LINK O6 0G D 18 CA CA D 101 1555 1555 2.52 LINK O6 0G D 19 CA CA D 101 1555 1555 2.46 LINK O6 0G D 22 CA CA D 101 1555 1555 2.50 LINK O6 0G D 25 CA CA D 101 1555 1555 2.60 LINK O6 0G D 26 CA CA D 101 1555 1555 2.52 LINK O6 0G D 27 CA CA D 101 1555 1555 2.46 LINK O6 0G D 32 CA CA D 101 1555 1555 2.53 LINK OP1 0G D 32 MG MG D 103 1555 1555 2.08 LINK OP2 0C D 34 CA CA D 102 1555 1555 2.28 LINK CA CA D 102 O HOH D 261 1555 1555 2.48 LINK CA CA D 102 O HOH D 262 1555 1555 2.60 LINK CA CA D 102 O HOH D 267 1555 1555 2.55 LINK CA CA D 102 O HOH D 270 1555 1555 2.40 LINK CA CA D 102 O HOH D 272 1555 1555 2.57 LINK CA CA D 102 O HOH D 297 1555 1555 2.40 LINK MG MG D 103 O HOH D 249 1555 1555 2.12 LINK MG MG D 103 O HOH D 250 1555 1555 2.12 LINK MG MG D 103 O HOH D 259 1555 1555 2.21 LINK MG MG D 103 O HOH D 315 1555 1555 2.05 LINK OP2 0U E 5 MG MG E 103 1555 1555 1.98 LINK O6 0G E 17 CA CA E 101 1555 1555 2.51 LINK O6 0G E 18 CA CA E 101 1555 1555 2.49 LINK O6 0G E 19 CA CA E 101 1555 1555 2.42 LINK O6 0G E 22 CA CA E 101 1555 1555 2.52 LINK O6 0G E 25 CA CA E 101 1555 1555 2.56 LINK O6 0G E 26 CA CA E 101 1555 1555 2.50 LINK O6 0G E 27 CA CA E 101 1555 1555 2.47 LINK O6 0G E 32 CA CA E 101 1555 1555 2.50 LINK OP1 0G E 32 MG MG E 103 1555 1555 3.92 LINK OP1 0C E 34 CA CA E 102 1555 1555 2.40 LINK CA CA E 102 O HOH E 236 1555 1555 2.64 LINK CA CA E 102 O HOH E 243 1555 1555 2.41 LINK CA CA E 102 O HOH E 246 1555 1555 2.62 LINK CA CA E 102 O HOH E 258 1555 1555 2.48 LINK CA CA E 102 O HOH E 261 1555 1555 2.40 LINK CA CA E 102 O HOH E 265 1555 1555 2.36 LINK MG MG E 103 O HOH E 224 1555 1555 2.09 LINK MG MG E 103 O HOH E 225 1555 1555 2.04 LINK MG MG E 103 O HOH E 227 1555 1555 2.09 LINK MG MG E 103 O HOH E 230 1555 1555 2.16 CRYST1 46.470 282.254 45.899 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021519 0.000000 0.000000 0.00000 SCALE2 0.000000 0.003543 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021787 0.00000