HEADER DNA-RNA HYBRID 02-SEP-14 4WB3 TITLE CRYSTAL STRUCTURE OF THE MIRROR-IMAGE L-RNA/L-DNA APTAMER NOX-D20 IN TITLE 2 COMPLEX WITH MOUSE C5A-DESARG COMPLEMENT ANAPHYLATOXIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT C5; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: HEMOLYTIC COMPLEMENT; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MIXED L-RNA/L-DNA APTAMER NOX-D20 (40-MER); COMPND 8 CHAIN: D, E; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: C5, HC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SHUFFLE T7 EXPRESS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS PROTEIN-RNA COMPLEX, MIRROR-IMAGE APTAMER, G-QUADRUPLEX, COMPLEMENT KEYWDS 2 ANAPHYLATOXIN, DNA-RNA HYBRID EXPDTA X-RAY DIFFRACTION AUTHOR L.YATIME,C.MAASCH,K.HOEHLIG,S.KLUSSMANN,A.VATER,G.R.ANDERSEN REVDAT 3 10-JAN-24 4WB3 1 LINK REVDAT 2 17-JAN-18 4WB3 1 REMARK REVDAT 1 06-MAY-15 4WB3 0 JRNL AUTH L.YATIME,C.MAASCH,K.HOEHLIG,S.KLUSSMANN,G.R.ANDERSEN,A.VATER JRNL TITL STRUCTURAL BASIS FOR THE TARGETING OF COMPLEMENT JRNL TITL 2 ANAPHYLATOXIN C5A USING A MIXED L-RNA/L-DNA APTAMER. JRNL REF NAT COMMUN V. 6 6481 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 25901944 JRNL DOI 10.1038/NCOMMS7481 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1702) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 40265 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2023 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.8563 - 4.8156 0.98 3014 162 0.1401 0.1849 REMARK 3 2 4.8156 - 3.8242 0.99 2803 160 0.1379 0.1469 REMARK 3 3 3.8242 - 3.3413 0.99 2854 144 0.1421 0.1750 REMARK 3 4 3.3413 - 3.0361 0.98 2741 155 0.1527 0.1907 REMARK 3 5 3.0361 - 2.8186 0.98 2758 148 0.1754 0.2340 REMARK 3 6 2.8186 - 2.6525 0.98 2756 145 0.1846 0.2229 REMARK 3 7 2.6525 - 2.5197 0.97 2710 138 0.1870 0.2278 REMARK 3 8 2.5197 - 2.4100 0.97 2637 153 0.1839 0.2142 REMARK 3 9 2.4100 - 2.3173 0.97 2734 128 0.1821 0.2230 REMARK 3 10 2.3173 - 2.2373 0.96 2685 133 0.1819 0.2386 REMARK 3 11 2.2373 - 2.1674 0.96 2628 142 0.1854 0.2308 REMARK 3 12 2.1674 - 2.1055 0.96 2673 136 0.1914 0.2581 REMARK 3 13 2.1055 - 2.0500 0.95 2650 130 0.2077 0.2479 REMARK 3 14 2.0500 - 2.0000 0.95 2599 149 0.2172 0.2427 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3638 REMARK 3 ANGLE : 1.469 5284 REMARK 3 CHIRALITY : 0.066 556 REMARK 3 PLANARITY : 0.006 379 REMARK 3 DIHEDRAL : 43.995 1615 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -19.2894 23.0218 -16.3148 REMARK 3 T TENSOR REMARK 3 T11: 0.2043 T22: 0.2115 REMARK 3 T33: 0.1491 T12: 0.0592 REMARK 3 T13: 0.0241 T23: 0.0417 REMARK 3 L TENSOR REMARK 3 L11: 3.8835 L22: 3.2281 REMARK 3 L33: 2.7060 L12: 1.1425 REMARK 3 L13: 0.3801 L23: -0.6281 REMARK 3 S TENSOR REMARK 3 S11: -0.0387 S12: 0.3989 S13: 0.1940 REMARK 3 S21: -0.4994 S22: 0.0566 S23: -0.0214 REMARK 3 S31: -0.0610 S32: 0.0092 S33: -0.0402 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -36.0221 7.0856 -10.7311 REMARK 3 T TENSOR REMARK 3 T11: 0.0983 T22: 0.2302 REMARK 3 T33: 0.2099 T12: 0.0339 REMARK 3 T13: -0.0002 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 2.9358 L22: 3.6054 REMARK 3 L33: 2.9816 L12: 0.5129 REMARK 3 L13: 0.6589 L23: -0.3285 REMARK 3 S TENSOR REMARK 3 S11: -0.1647 S12: 0.0710 S13: 0.3042 REMARK 3 S21: -0.0520 S22: 0.1849 S23: 0.2735 REMARK 3 S31: -0.3161 S32: -0.1675 S33: -0.0119 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -0.9744 57.2623 20.6915 REMARK 3 T TENSOR REMARK 3 T11: 0.6095 T22: 0.3485 REMARK 3 T33: 0.5702 T12: -0.1265 REMARK 3 T13: -0.0097 T23: -0.0423 REMARK 3 L TENSOR REMARK 3 L11: 2.4184 L22: 2.6422 REMARK 3 L33: 0.5881 L12: 1.7917 REMARK 3 L13: 1.0131 L23: 1.2130 REMARK 3 S TENSOR REMARK 3 S11: -0.0367 S12: 0.0565 S13: 0.3194 REMARK 3 S21: 0.2571 S22: 0.1502 S23: -0.8264 REMARK 3 S31: -0.7935 S32: 0.6214 S33: -0.1401 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D AND RESID 1:40 REMARK 3 ORIGIN FOR THE GROUP (A): -11.5370 21.2456 -1.6082 REMARK 3 T TENSOR REMARK 3 T11: 0.1381 T22: 0.1766 REMARK 3 T33: 0.1650 T12: 0.0261 REMARK 3 T13: -0.0006 T23: -0.0460 REMARK 3 L TENSOR REMARK 3 L11: 2.2405 L22: 3.2762 REMARK 3 L33: 1.8258 L12: -0.4897 REMARK 3 L13: 0.0933 L23: -0.1808 REMARK 3 S TENSOR REMARK 3 S11: 0.0251 S12: -0.1615 S13: 0.3031 REMARK 3 S21: 0.0572 S22: 0.0331 S23: -0.2660 REMARK 3 S31: -0.1262 S32: 0.1339 S33: -0.0622 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN E AND RESID 1:40 REMARK 3 ORIGIN FOR THE GROUP (A): -17.0659 53.8326 16.3845 REMARK 3 T TENSOR REMARK 3 T11: 0.5429 T22: 0.2239 REMARK 3 T33: 0.3253 T12: 0.0579 REMARK 3 T13: 0.0214 T23: -0.0521 REMARK 3 L TENSOR REMARK 3 L11: 2.9898 L22: 3.1304 REMARK 3 L33: 1.7745 L12: -0.6788 REMARK 3 L13: 0.4891 L23: 0.0621 REMARK 3 S TENSOR REMARK 3 S11: -0.0284 S12: 0.0609 S13: 0.2209 REMARK 3 S21: -0.2458 S22: -0.0283 S23: 0.2628 REMARK 3 S31: -0.6505 S32: -0.1852 S33: 0.0509 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WB3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203511. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41442 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09800 REMARK 200 FOR THE DATA SET : 12.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.59800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: 4WB2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M NA REMARK 280 ACETATE PH 4.0, 15% (W/V) PEG 4000, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 22.92000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 141.31500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.92000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 141.31500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 915 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 920 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 677 REMARK 465 ALA A 678 REMARK 465 PRO A 747 REMARK 465 HIS A 748 REMARK 465 LYS A 749 REMARK 465 PRO A 750 REMARK 465 VAL A 751 REMARK 465 GLN A 752 REMARK 465 LEU A 753 REMARK 465 GLY A 754 REMARK 465 GLY B 677 REMARK 465 ALA B 678 REMARK 465 ASN B 679 REMARK 465 LEU B 680 REMARK 465 LYS B 749 REMARK 465 PRO B 750 REMARK 465 VAL B 751 REMARK 465 GLN B 752 REMARK 465 LEU B 753 REMARK 465 GLY B 754 REMARK 465 GLY C 677 REMARK 465 PRO C 747 REMARK 465 HIS C 748 REMARK 465 LYS C 749 REMARK 465 PRO C 750 REMARK 465 VAL C 751 REMARK 465 GLN C 752 REMARK 465 LEU C 753 REMARK 465 GLY C 754 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 0G D 1 C4 0G D 1 C5 0.089 REMARK 500 0G D 1 C5 0G D 1 C6 0.064 REMARK 500 0G D 1 C6 0G D 1 N1 -0.050 REMARK 500 0G D 1 C5 0G D 1 N7 -0.040 REMARK 500 0G D 1 N7 0G D 1 C8 0.056 REMARK 500 0C D 2 C5 0C D 2 C6 0.055 REMARK 500 0G D 3 C4 0G D 3 C5 0.085 REMARK 500 0G D 3 C5 0G D 3 C6 0.064 REMARK 500 0G D 3 N7 0G D 3 C8 0.054 REMARK 500 0G D 3 N9 0G D 3 C4 -0.054 REMARK 500 0A D 4 C4 0A D 4 C5 0.088 REMARK 500 0A D 4 C5 0A D 4 C6 0.072 REMARK 500 0A D 4 C5 0A D 4 N7 -0.038 REMARK 500 0A D 4 N9 0A D 4 C4 -0.050 REMARK 500 0U D 5 C5 0U D 5 C6 0.059 REMARK 500 0G D 6 C4 0G D 6 C5 0.077 REMARK 500 0G D 6 C5 0G D 6 C6 0.062 REMARK 500 0G D 6 C6 0G D 6 N1 -0.051 REMARK 500 0G D 6 C5 0G D 6 N7 -0.037 REMARK 500 0G D 6 N7 0G D 6 C8 0.052 REMARK 500 0G D 6 N9 0G D 6 C4 -0.058 REMARK 500 0G D 8 C4 0G D 8 C5 0.082 REMARK 500 0G D 8 C6 0G D 8 N1 -0.048 REMARK 500 0G D 8 C5 0G D 8 N7 -0.043 REMARK 500 0G D 8 N7 0G D 8 C8 0.047 REMARK 500 0G D 8 N9 0G D 8 C4 -0.050 REMARK 500 0G D 9 C4 0G D 9 C5 0.087 REMARK 500 0G D 9 C6 0G D 9 N1 -0.054 REMARK 500 0G D 9 C5 0G D 9 N7 -0.042 REMARK 500 0G D 9 N7 0G D 9 C8 0.058 REMARK 500 0U D 10 C2 0U D 10 N3 -0.043 REMARK 500 0U D 10 C5 0U D 10 C6 0.059 REMARK 500 0G D 11 C4 0G D 11 C5 0.088 REMARK 500 0G D 11 C6 0G D 11 N1 -0.054 REMARK 500 0G D 11 C5 0G D 11 N7 -0.041 REMARK 500 0G D 11 N7 0G D 11 C8 0.054 REMARK 500 0G D 12 C4 0G D 12 C5 0.079 REMARK 500 0G D 12 C6 0G D 12 N1 -0.044 REMARK 500 0G D 12 N7 0G D 12 C8 0.051 REMARK 500 0G D 12 N9 0G D 12 C4 -0.054 REMARK 500 0U D 13 C5 0U D 13 C6 0.057 REMARK 500 0DG D 14 C4 0DG D 14 C5 0.092 REMARK 500 0DG D 14 C5 0DG D 14 C6 0.062 REMARK 500 0DG D 14 C6 0DG D 14 N1 -0.050 REMARK 500 0DG D 14 C5 0DG D 14 N7 -0.044 REMARK 500 0DG D 14 N7 0DG D 14 C8 0.053 REMARK 500 0A D 16 C4 0A D 16 C5 0.083 REMARK 500 0A D 16 C5 0A D 16 C6 0.069 REMARK 500 0A D 16 C5 0A D 16 N7 -0.044 REMARK 500 0A D 16 N7 0A D 16 C8 0.044 REMARK 500 REMARK 500 THIS ENTRY HAS 224 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 0G D 1 C2 - N3 - C4 ANGL. DEV. = 9.3 DEGREES REMARK 500 0G D 1 N3 - C4 - C5 ANGL. DEV. = -10.2 DEGREES REMARK 500 0G D 1 C5 - C6 - N1 ANGL. DEV. = 6.8 DEGREES REMARK 500 0G D 1 C4 - C5 - N7 ANGL. DEV. = -4.5 DEGREES REMARK 500 0G D 1 C5 - N7 - C8 ANGL. DEV. = 3.4 DEGREES REMARK 500 0G D 1 N3 - C4 - N9 ANGL. DEV. = 8.9 DEGREES REMARK 500 0G D 1 C6 - C5 - N7 ANGL. DEV. = 5.9 DEGREES REMARK 500 0G D 1 C5 - C6 - O6 ANGL. DEV. = -8.0 DEGREES REMARK 500 0G D 3 C2 - N3 - C4 ANGL. DEV. = 9.2 DEGREES REMARK 500 0G D 3 N3 - C4 - C5 ANGL. DEV. = -8.5 DEGREES REMARK 500 0G D 3 C5 - C6 - N1 ANGL. DEV. = 6.3 DEGREES REMARK 500 0G D 3 C4 - C5 - N7 ANGL. DEV. = -4.7 DEGREES REMARK 500 0G D 3 C5 - N7 - C8 ANGL. DEV. = 3.5 DEGREES REMARK 500 0G D 3 N7 - C8 - N9 ANGL. DEV. = -3.1 DEGREES REMARK 500 0G D 3 C8 - N9 - C4 ANGL. DEV. = 3.0 DEGREES REMARK 500 0G D 3 N3 - C4 - N9 ANGL. DEV. = 7.2 DEGREES REMARK 500 0G D 3 C6 - C5 - N7 ANGL. DEV. = 7.4 DEGREES REMARK 500 0G D 3 C5 - C6 - O6 ANGL. DEV. = -7.6 DEGREES REMARK 500 0A D 4 N1 - C2 - N3 ANGL. DEV. = -5.1 DEGREES REMARK 500 0A D 4 C2 - N3 - C4 ANGL. DEV. = 8.7 DEGREES REMARK 500 0A D 4 N3 - C4 - C5 ANGL. DEV. = -6.8 DEGREES REMARK 500 0A D 4 C4 - C5 - N7 ANGL. DEV. = -3.5 DEGREES REMARK 500 0A D 4 C5 - N7 - C8 ANGL. DEV. = 3.4 DEGREES REMARK 500 0A D 4 N7 - C8 - N9 ANGL. DEV. = -3.2 DEGREES REMARK 500 0A D 4 C8 - N9 - C4 ANGL. DEV. = 4.0 DEGREES REMARK 500 0A D 4 N3 - C4 - N9 ANGL. DEV. = 7.5 DEGREES REMARK 500 0A D 4 N1 - C6 - N6 ANGL. DEV. = 3.9 DEGREES REMARK 500 0U D 5 N1 - C2 - N3 ANGL. DEV. = 5.4 DEGREES REMARK 500 0U D 5 C2 - N3 - C4 ANGL. DEV. = -6.0 DEGREES REMARK 500 0U D 5 N3 - C4 - C5 ANGL. DEV. = 5.8 DEGREES REMARK 500 0U D 5 C5 - C4 - O4 ANGL. DEV. = -4.9 DEGREES REMARK 500 0G D 6 C2 - N3 - C4 ANGL. DEV. = 8.0 DEGREES REMARK 500 0G D 6 N3 - C4 - C5 ANGL. DEV. = -8.1 DEGREES REMARK 500 0G D 6 C5 - C6 - N1 ANGL. DEV. = 6.1 DEGREES REMARK 500 0G D 6 C4 - C5 - N7 ANGL. DEV. = -4.2 DEGREES REMARK 500 0G D 6 C5 - N7 - C8 ANGL. DEV. = 3.3 DEGREES REMARK 500 0G D 6 N7 - C8 - N9 ANGL. DEV. = -3.5 DEGREES REMARK 500 0G D 6 C8 - N9 - C4 ANGL. DEV. = 3.8 DEGREES REMARK 500 0G D 6 N3 - C4 - N9 ANGL. DEV. = 7.4 DEGREES REMARK 500 0G D 6 C6 - C5 - N7 ANGL. DEV. = 6.6 DEGREES REMARK 500 0G D 6 C5 - C6 - O6 ANGL. DEV. = -8.0 DEGREES REMARK 500 0G D 8 C2 - N3 - C4 ANGL. DEV. = 9.1 DEGREES REMARK 500 0G D 8 N3 - C4 - C5 ANGL. DEV. = -9.1 DEGREES REMARK 500 0G D 8 C5 - C6 - N1 ANGL. DEV. = 7.1 DEGREES REMARK 500 0G D 8 C4 - C5 - N7 ANGL. DEV. = -2.8 DEGREES REMARK 500 0G D 8 C8 - N9 - C4 ANGL. DEV. = 2.9 DEGREES REMARK 500 0G D 8 N3 - C4 - N9 ANGL. DEV. = 9.2 DEGREES REMARK 500 0G D 8 C6 - C5 - N7 ANGL. DEV. = 5.2 DEGREES REMARK 500 0G D 8 C5 - C6 - O6 ANGL. DEV. = -9.6 DEGREES REMARK 500 0G D 9 C2 - N3 - C4 ANGL. DEV. = 8.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 458 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 710 21.79 -150.40 REMARK 500 ASN A 710 37.26 -156.58 REMARK 500 PHE A 711 -145.93 -102.78 REMARK 500 PHE A 711 -145.93 -116.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 801 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 705 OD2 REMARK 620 2 0U D 5 OP1 71.1 REMARK 620 3 0G D 6 OP1 116.6 100.5 REMARK 620 4 0G D 32 OP2 107.6 69.8 128.7 REMARK 620 5 HOH D 253 O 152.0 136.0 71.3 82.0 REMARK 620 6 HOH D 254 O 77.4 143.7 109.6 104.1 74.7 REMARK 620 7 HOH D 258 O 90.9 116.3 35.2 161.4 82.3 81.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 801 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 705 OD2 REMARK 620 2 0U E 5 OP2 75.8 REMARK 620 3 0G E 6 OP1 134.0 73.2 REMARK 620 4 0G E 32 OP2 87.7 79.1 118.0 REMARK 620 5 HOH E 209 O 72.8 144.2 142.4 83.0 REMARK 620 6 HOH E 227 O 87.7 118.7 78.7 159.7 76.7 REMARK 620 7 HOH E 247 O 147.4 134.7 75.5 87.9 74.6 85.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 0U D 5 OP2 REMARK 620 2 0G D 32 OP1 71.8 REMARK 620 3 HOH D 252 O 173.0 104.2 REMARK 620 4 HOH D 255 O 89.6 71.2 83.7 REMARK 620 5 HOH D 259 O 92.0 117.4 94.9 171.3 REMARK 620 6 HOH D 266 O 98.6 157.2 83.0 88.5 82.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 0G D 17 O6 REMARK 620 2 0G D 18 O6 77.3 REMARK 620 3 0G D 19 O6 74.6 73.7 REMARK 620 4 0G D 22 O6 147.2 72.3 85.1 REMARK 620 5 0G D 25 O6 116.9 134.0 69.4 77.9 REMARK 620 6 0G D 26 O6 136.6 124.7 142.9 73.3 76.7 REMARK 620 7 0G D 27 O6 70.6 143.2 113.2 142.1 78.3 72.8 REMARK 620 8 0G D 32 O6 74.9 74.9 140.1 108.0 149.2 76.3 79.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 0C D 34 OP1 REMARK 620 2 HOH D 256 O 136.9 REMARK 620 3 HOH D 260 O 82.2 125.9 REMARK 620 4 HOH D 261 O 153.5 66.4 71.8 REMARK 620 5 HOH D 262 O 80.4 75.9 77.9 98.3 REMARK 620 6 HOH D 265 O 84.9 75.3 157.9 118.1 117.5 REMARK 620 7 HOH D 290 O 93.6 119.7 82.1 78.5 159.7 80.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 0U E 5 OP1 REMARK 620 2 0G E 32 OP1 91.7 REMARK 620 3 HOH E 206 O 88.9 106.6 REMARK 620 4 HOH E 207 O 175.4 87.4 87.1 REMARK 620 5 HOH E 208 O 90.4 83.7 169.8 94.0 REMARK 620 6 HOH E 213 O 93.1 164.8 88.0 89.0 81.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 0G E 17 O6 REMARK 620 2 0G E 18 O6 79.8 REMARK 620 3 0G E 19 O6 76.5 77.2 REMARK 620 4 0G E 22 O6 148.8 71.6 84.9 REMARK 620 5 0G E 25 O6 118.1 134.1 68.1 76.2 REMARK 620 6 0G E 26 O6 136.8 123.2 139.4 72.0 74.2 REMARK 620 7 0G E 27 O6 70.8 147.2 108.6 139.9 74.6 73.9 REMARK 620 8 0G E 32 O6 78.6 75.8 145.9 105.6 145.5 73.9 84.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 0C E 34 OP2 REMARK 620 2 HOH E 216 O 137.4 REMARK 620 3 HOH E 217 O 151.4 70.1 REMARK 620 4 HOH E 222 O 79.3 129.8 85.9 REMARK 620 5 HOH E 229 O 87.6 122.6 66.0 81.8 REMARK 620 6 HOH E 230 O 79.7 74.7 107.4 155.5 85.0 REMARK 620 7 HOH E 231 O 83.0 76.6 117.4 76.8 157.9 112.7 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WB2 RELATED DB: PDB REMARK 900 4WB2 CONTAINS THE SAME L-RNA/L-DNA APTAMER IN COMPLEX WITH MOUSE C5A DBREF 4WB3 A 679 754 UNP P06684 CO5_MOUSE 679 754 DBREF 4WB3 B 679 754 UNP P06684 CO5_MOUSE 679 754 DBREF 4WB3 C 679 754 UNP P06684 CO5_MOUSE 679 754 DBREF 4WB3 D 1 40 PDB 4WB3 4WB3 1 40 DBREF 4WB3 E 1 40 PDB 4WB3 4WB3 1 40 SEQADV 4WB3 GLY A 677 UNP P06684 EXPRESSION TAG SEQADV 4WB3 ALA A 678 UNP P06684 EXPRESSION TAG SEQADV 4WB3 GLY B 677 UNP P06684 EXPRESSION TAG SEQADV 4WB3 ALA B 678 UNP P06684 EXPRESSION TAG SEQADV 4WB3 GLY C 677 UNP P06684 EXPRESSION TAG SEQADV 4WB3 ALA C 678 UNP P06684 EXPRESSION TAG SEQRES 1 A 78 GLY ALA ASN LEU HIS LEU LEU ARG GLN LYS ILE GLU GLU SEQRES 2 A 78 GLN ALA ALA LYS TYR LYS HIS SER VAL PRO LYS LYS CYS SEQRES 3 A 78 CYS TYR ASP GLY ALA ARG VAL ASN PHE TYR GLU THR CYS SEQRES 4 A 78 GLU GLU ARG VAL ALA ARG VAL THR ILE GLY PRO LEU CYS SEQRES 5 A 78 ILE ARG ALA PHE ASN GLU CYS CYS THR ILE ALA ASN LYS SEQRES 6 A 78 ILE ARG LYS GLU SER PRO HIS LYS PRO VAL GLN LEU GLY SEQRES 1 B 78 GLY ALA ASN LEU HIS LEU LEU ARG GLN LYS ILE GLU GLU SEQRES 2 B 78 GLN ALA ALA LYS TYR LYS HIS SER VAL PRO LYS LYS CYS SEQRES 3 B 78 CYS TYR ASP GLY ALA ARG VAL ASN PHE TYR GLU THR CYS SEQRES 4 B 78 GLU GLU ARG VAL ALA ARG VAL THR ILE GLY PRO LEU CYS SEQRES 5 B 78 ILE ARG ALA PHE ASN GLU CYS CYS THR ILE ALA ASN LYS SEQRES 6 B 78 ILE ARG LYS GLU SER PRO HIS LYS PRO VAL GLN LEU GLY SEQRES 1 C 78 GLY ALA ASN LEU HIS LEU LEU ARG GLN LYS ILE GLU GLU SEQRES 2 C 78 GLN ALA ALA LYS TYR LYS HIS SER VAL PRO LYS LYS CYS SEQRES 3 C 78 CYS TYR ASP GLY ALA ARG VAL ASN PHE TYR GLU THR CYS SEQRES 4 C 78 GLU GLU ARG VAL ALA ARG VAL THR ILE GLY PRO LEU CYS SEQRES 5 C 78 ILE ARG ALA PHE ASN GLU CYS CYS THR ILE ALA ASN LYS SEQRES 6 C 78 ILE ARG LYS GLU SER PRO HIS LYS PRO VAL GLN LEU GLY SEQRES 1 D 40 0G 0C 0G 0A 0U 0G 3KA 0G 0G 0U 0G 0G 0U SEQRES 2 D 40 0DG 0DA 0A 0G 0G 0G 0U 0U 0G 0U 0U 0G 0G SEQRES 3 D 40 0G 3KA 0G 3KA 0C 0G 0A 0C 0G 0C 0A 0DC 0G SEQRES 4 D 40 0C SEQRES 1 E 40 0G 0C 0G 0A 0U 0G 3KA 0G 0G 0U 0G 0G 0U SEQRES 2 E 40 0DG 0DA 0A 0G 0G 0G 0U 0U 0G 0U 0U 0G 0G SEQRES 3 E 40 0G 3KA 0G 3KA 0C 0G 0A 0C 0G 0C 0A 0DC 0G SEQRES 4 E 40 0C HET 0G D 1 20 HET 0C D 2 20 HET 0G D 3 23 HET 0A D 4 22 HET 0U D 5 20 HET 0G D 6 23 HET 3KA D 7 19 HET 0G D 8 23 HET 0G D 9 23 HET 0U D 10 20 HET 0G D 11 23 HET 0G D 12 23 HET 0U D 13 20 HET 0DG D 14 22 HET 0DA D 15 21 HET 0A D 16 22 HET 0G D 17 23 HET 0G D 18 23 HET 0G D 19 23 HET 0U D 20 20 HET 0U D 21 20 HET 0G D 22 23 HET 0U D 23 20 HET 0U D 24 20 HET 0G D 25 23 HET 0G D 26 23 HET 0G D 27 23 HET 3KA D 28 19 HET 0G D 29 23 HET 3KA D 30 19 HET 0C D 31 20 HET 0G D 32 23 HET 0A D 33 22 HET 0C D 34 20 HET 0G D 35 23 HET 0C D 36 20 HET 0A D 37 22 HET 0DC D 38 19 HET 0G D 39 23 HET 0C D 40 20 HET 0G E 1 20 HET 0C E 2 20 HET 0G E 3 23 HET 0A E 4 22 HET 0U E 5 20 HET 0G E 6 23 HET 3KA E 7 19 HET 0G E 8 23 HET 0G E 9 23 HET 0U E 10 20 HET 0G E 11 23 HET 0G E 12 23 HET 0U E 13 20 HET 0DG E 14 22 HET 0DA E 15 21 HET 0A E 16 22 HET 0G E 17 23 HET 0G E 18 23 HET 0G E 19 23 HET 0U E 20 20 HET 0U E 21 20 HET 0G E 22 23 HET 0U E 23 20 HET 0U E 24 20 HET 0G E 25 23 HET 0G E 26 23 HET 0G E 27 23 HET 3KA E 28 19 HET 0G E 29 23 HET 3KA E 30 19 HET 0C E 31 20 HET 0G E 32 23 HET 0A E 33 22 HET 0C E 34 20 HET 0G E 35 23 HET 0C E 36 20 HET 0A E 37 22 HET 0DC E 38 19 HET 0G E 39 23 HET 0C E 40 20 HET CA A 801 1 HET ACT B 801 4 HET ACT B 802 4 HET CA C 801 1 HET CA D 101 1 HET CA D 102 1 HET MG D 103 1 HET ACT D 104 4 HET CA E 101 1 HET CA E 102 1 HET MG E 103 1 HETNAM 0G L-GUANOSINE-5'-MONOPHOSPHATE HETNAM 0C L-CYTIDINE-5'-MONOPHOSPHATE HETNAM 0A L-ADENOSINE-5'-MONOPHOSPHATE HETNAM 0U L-URIDINE-5'-MONOPHOSPHATE HETNAM 3KA 1-(2-DEOXY-5-O-PHOSPHONO-BETA-L-ERYTHRO- HETNAM 2 3KA PENTOFURANOSYL)PYRIMIDINE-2,4(1H,3H)-DIONE HETNAM 0DG 2'-DEOXY-L-RIBO-FURANOSYL GUANINE-5'-MONOPHOSPHATE HETNAM 0DA 2'-DEOXY-L-RIBO-FURANOSYL ADENOSINE-5'-MONOPHOSPHATE HETNAM 0DC 2'-DEOXY-L-RIBO-FURANOSYL CYTOSINE-5'-MONOPHOSPHATE HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETNAM MG MAGNESIUM ION HETSYN 3KA L-2'-DEOXYURIDINE-5'-MONOPHOSPHATE FORMUL 4 0G 36(C10 H14 N5 O8 P) FORMUL 4 0C 10(C9 H14 N3 O8 P) FORMUL 4 0A 8(C10 H14 N5 O7 P) FORMUL 4 0U 14(C9 H13 N2 O9 P) FORMUL 4 3KA 6(C9 H13 N2 O8 P) FORMUL 4 0DG 2(C10 H14 N5 O7 P) FORMUL 4 0DA 2(C10 H14 N5 O6 P) FORMUL 4 0DC 2(C9 H14 N3 O7 P) FORMUL 6 CA 6(CA 2+) FORMUL 7 ACT 3(C2 H3 O2 1-) FORMUL 12 MG 2(MG 2+) FORMUL 17 HOH *373(H2 O) HELIX 1 AA1 ASN A 679 ALA A 692 1 14 HELIX 2 AA2 HIS A 696 ARG A 708 1 13 HELIX 3 AA3 THR A 714 ALA A 720 1 7 HELIX 4 AA4 GLY A 725 SER A 746 1 22 HELIX 5 AA5 LEU B 682 ALA B 692 1 11 HELIX 6 AA6 HIS B 696 ARG B 708 1 13 HELIX 7 AA7 THR B 714 ALA B 720 1 7 HELIX 8 AA8 GLY B 725 GLU B 745 1 21 HELIX 9 AA9 ASN C 679 ALA C 692 1 14 HELIX 10 AB1 HIS C 696 ALA C 707 1 12 HELIX 11 AB2 THR C 714 ALA C 720 1 7 HELIX 12 AB3 GLY C 725 GLU C 745 1 21 SSBOND 1 CYS A 702 CYS A 728 1555 1555 2.02 SSBOND 2 CYS A 703 CYS A 735 1555 1555 2.03 SSBOND 3 CYS A 715 CYS A 736 1555 1555 2.03 SSBOND 4 CYS B 702 CYS B 728 1555 1555 2.03 SSBOND 5 CYS B 703 CYS B 735 1555 1555 2.00 SSBOND 6 CYS B 715 CYS B 736 1555 1555 2.01 SSBOND 7 CYS C 702 CYS C 728 1555 1555 2.02 SSBOND 8 CYS C 703 CYS C 735 1555 1555 2.03 SSBOND 9 CYS C 715 CYS C 736 1555 1555 2.03 LINK O3' 0G D 1 P 0C D 2 1555 1555 1.61 LINK O3' 0C D 2 P 0G D 3 1555 1555 1.61 LINK O3' 0U D 5 P 0G D 6 1555 1555 1.61 LINK O3' 0G D 6 P 3KA D 7 1555 1555 1.59 LINK O3' 3KA D 7 P 0G D 8 1555 1555 1.62 LINK O3' 0G D 8 P 0G D 9 1555 1555 1.61 LINK O3' 0G D 9 P 0U D 10 1555 1555 1.62 LINK O3' 0U D 10 P 0G D 11 1555 1555 1.62 LINK O3' 0G D 11 P 0G D 12 1555 1555 1.60 LINK O3' 0G D 12 P 0U D 13 1555 1555 1.59 LINK O3' 0U D 13 P 0DG D 14 1555 1555 1.61 LINK O3' 0DG D 14 P 0DA D 15 1555 1555 1.61 LINK O3' 0G D 17 P 0G D 18 1555 1555 1.61 LINK O3' 0G D 18 P 0G D 19 1555 1555 1.60 LINK O3' 0G D 19 P 0U D 20 1555 1555 1.60 LINK O3' 0U D 20 P 0U D 21 1555 1555 1.60 LINK O3' 0U D 21 P 0G D 22 1555 1555 1.61 LINK O3' 0G D 22 P 0U D 23 1555 1555 1.60 LINK O3' 0U D 23 P 0U D 24 1555 1555 1.61 LINK O3' 0U D 24 P 0G D 25 1555 1555 1.60 LINK O3' 0G D 25 P 0G D 26 1555 1555 1.61 LINK O3' 0G D 26 P 0G D 27 1555 1555 1.61 LINK O3' 0G D 27 P 3KA D 28 1555 1555 1.61 LINK O3' 3KA D 28 P 0G D 29 1555 1555 1.61 LINK O3' 0G D 29 P 3KA D 30 1555 1555 1.61 LINK O3' 3KA D 30 P 0C D 31 1555 1555 1.62 LINK O3' 0C D 31 P 0G D 32 1555 1555 1.61 LINK O3' 0C D 34 P 0G D 35 1555 1555 1.60 LINK O3' 0G D 35 P 0C D 36 1555 1555 1.61 LINK O3' 0DC D 38 P 0G D 39 1555 1555 1.61 LINK O3' 0G D 39 P 0C D 40 1555 1555 1.60 LINK O3' 0G E 1 P 0C E 2 1555 1555 1.61 LINK O3' 0C E 2 P 0G E 3 1555 1555 1.60 LINK O3' 0U E 5 P 0G E 6 1555 1555 1.60 LINK O3' 0G E 6 P 3KA E 7 1555 1555 1.60 LINK O3' 3KA E 7 P 0G E 8 1555 1555 1.61 LINK O3' 0G E 8 P 0G E 9 1555 1555 1.61 LINK O3' 0G E 9 P 0U E 10 1555 1555 1.62 LINK O3' 0U E 10 P 0G E 11 1555 1555 1.62 LINK O3' 0G E 11 P 0G E 12 1555 1555 1.61 LINK O3' 0G E 12 P 0U E 13 1555 1555 1.60 LINK O3' 0U E 13 P 0DG E 14 1555 1555 1.61 LINK O3' 0DG E 14 P 0DA E 15 1555 1555 1.60 LINK O3' 0G E 17 P 0G E 18 1555 1555 1.62 LINK O3' 0G E 18 P 0G E 19 1555 1555 1.61 LINK O3' 0G E 19 P 0U E 20 1555 1555 1.61 LINK O3' 0U E 20 P 0U E 21 1555 1555 1.60 LINK O3' 0U E 21 P 0G E 22 1555 1555 1.60 LINK O3' 0G E 22 P 0U E 23 1555 1555 1.61 LINK O3' 0U E 23 P 0U E 24 1555 1555 1.60 LINK O3' 0U E 24 P 0G E 25 1555 1555 1.61 LINK O3' 0G E 25 P 0G E 26 1555 1555 1.60 LINK O3' 0G E 26 P 0G E 27 1555 1555 1.61 LINK O3' 0G E 27 P 3KA E 28 1555 1555 1.60 LINK O3' 3KA E 28 P 0G E 29 1555 1555 1.62 LINK O3' 0G E 29 P 3KA E 30 1555 1555 1.60 LINK O3' 3KA E 30 P 0C E 31 1555 1555 1.60 LINK O3' 0C E 31 P 0G E 32 1555 1555 1.59 LINK O3' 0C E 34 P 0G E 35 1555 1555 1.60 LINK O3' 0G E 35 P 0C E 36 1555 1555 1.60 LINK O3' 0DC E 38 P 0G E 39 1555 1555 1.60 LINK O3' 0G E 39 P 0C E 40 1555 1555 1.60 LINK OD2 ASP A 705 CA CA A 801 1555 1555 2.50 LINK CA CA A 801 OP1 0U D 5 1555 1555 2.40 LINK CA CA A 801 OP1 0G D 6 1555 1555 3.95 LINK CA CA A 801 OP2 0G D 32 1555 1555 4.28 LINK CA CA A 801 O HOH D 253 1555 1555 2.51 LINK CA CA A 801 O HOH D 254 1555 1555 2.57 LINK CA CA A 801 O HOH D 258 1555 1555 2.42 LINK OD2 ASP C 705 CA CA C 801 1555 1555 2.47 LINK CA CA C 801 OP2 0U E 5 1555 1555 2.40 LINK CA CA C 801 OP1 0G E 6 1555 1555 2.55 LINK CA CA C 801 OP2 0G E 32 1555 1555 2.27 LINK CA CA C 801 O HOH E 209 1555 1555 2.61 LINK CA CA C 801 O HOH E 227 1555 1555 2.40 LINK CA CA C 801 O HOH E 247 1555 1555 2.40 LINK OP2 0U D 5 MG MG D 103 1555 1555 1.92 LINK O6 0G D 17 CA CA D 101 1555 1555 2.57 LINK O6 0G D 18 CA CA D 101 1555 1555 2.52 LINK O6 0G D 19 CA CA D 101 1555 1555 2.48 LINK O6 0G D 22 CA CA D 101 1555 1555 2.52 LINK O6 0G D 25 CA CA D 101 1555 1555 2.54 LINK O6 0G D 26 CA CA D 101 1555 1555 2.44 LINK O6 0G D 27 CA CA D 101 1555 1555 2.42 LINK O6 0G D 32 CA CA D 101 1555 1555 2.50 LINK OP1 0G D 32 MG MG D 103 1555 1555 3.90 LINK OP1 0C D 34 CA CA D 102 1555 1555 2.28 LINK CA CA D 102 O HOH D 256 1555 1555 2.41 LINK CA CA D 102 O HOH D 260 1555 1555 2.45 LINK CA CA D 102 O HOH D 261 1555 1555 2.48 LINK CA CA D 102 O HOH D 262 1555 1555 2.48 LINK CA CA D 102 O HOH D 265 1555 1555 2.47 LINK CA CA D 102 O HOH D 290 1555 1555 2.34 LINK MG MG D 103 O HOH D 252 1555 1555 2.16 LINK MG MG D 103 O HOH D 255 1555 1555 2.12 LINK MG MG D 103 O HOH D 259 1555 1555 2.08 LINK MG MG D 103 O HOH D 266 1555 1555 2.26 LINK OP1 0U E 5 MG MG E 103 1555 1555 1.93 LINK O6 0G E 17 CA CA E 101 1555 1555 2.46 LINK O6 0G E 18 CA CA E 101 1555 1555 2.51 LINK O6 0G E 19 CA CA E 101 1555 1555 2.40 LINK O6 0G E 22 CA CA E 101 1555 1555 2.42 LINK O6 0G E 25 CA CA E 101 1555 1555 2.59 LINK O6 0G E 26 CA CA E 101 1555 1555 2.49 LINK O6 0G E 27 CA CA E 101 1555 1555 2.45 LINK O6 0G E 32 CA CA E 101 1555 1555 2.46 LINK OP1 0G E 32 MG MG E 103 1555 1555 2.07 LINK OP2 0C E 34 CA CA E 102 1555 1555 2.44 LINK CA CA E 102 O HOH E 216 1555 1555 2.43 LINK CA CA E 102 O HOH E 217 1555 1555 2.50 LINK CA CA E 102 O HOH E 222 1555 1555 2.51 LINK CA CA E 102 O HOH E 229 1555 1555 2.50 LINK CA CA E 102 O HOH E 230 1555 1555 2.52 LINK CA CA E 102 O HOH E 231 1555 1555 2.34 LINK MG MG E 103 O HOH E 206 1555 1555 2.05 LINK MG MG E 103 O HOH E 207 1555 1555 2.08 LINK MG MG E 103 O HOH E 208 1555 1555 2.22 LINK MG MG E 103 O HOH E 213 1555 1555 2.22 CRYST1 45.840 282.630 45.760 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021815 0.000000 0.000000 0.00000 SCALE2 0.000000 0.003538 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021853 0.00000