HEADER TRANSFERASE/TRANSFERASE INHIBITOR 02-SEP-14 4WB8 TITLE CRYSTAL STRUCTURE OF HUMAN CAMP-DEPENDENT PROTEIN KINASE A (CATALYTIC TITLE 2 ALPHA SUBUNIT), EXON 1 DELETION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 16-351; COMPND 5 SYNONYM: PKA C-ALPHA; COMPND 6 EC: 2.7.11.11; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PKI (5-24); COMPND 11 CHAIN: I; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRKACA, PKACA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLATE11; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS CATALYSIS, PROTEIN KINASE, ADENOSINE TRIPHOSPHATE, PHOSPHORYLATION, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.CHEUNG,C.GINTER,M.CASSIDY,M.C.FRANKLIN,M.J.RUDOLPH,W.A.HENDRICKSON REVDAT 6 16-OCT-24 4WB8 1 REMARK REVDAT 5 27-SEP-23 4WB8 1 REMARK LINK REVDAT 4 22-NOV-17 4WB8 1 SOURCE KEYWDS JRNL REMARK REVDAT 3 11-FEB-15 4WB8 1 JRNL REVDAT 2 04-FEB-15 4WB8 1 JRNL REVDAT 1 21-JAN-15 4WB8 0 JRNL AUTH J.CHEUNG,C.GINTER,M.CASSIDY,M.C.FRANKLIN,M.J.RUDOLPH, JRNL AUTH 2 N.ROBINE,R.B.DARNELL,W.A.HENDRICKSON JRNL TITL STRUCTURAL INSIGHTS INTO MIS-REGULATION OF PROTEIN KINASE A JRNL TITL 2 IN HUMAN TUMORS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 1374 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 25605907 JRNL DOI 10.1073/PNAS.1424206112 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 64973 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 3320 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.2830 - 4.4637 0.98 2766 137 0.1480 0.1823 REMARK 3 2 4.4637 - 3.5441 1.00 2677 142 0.1362 0.1482 REMARK 3 3 3.5441 - 3.0964 1.00 2607 165 0.1581 0.1580 REMARK 3 4 3.0964 - 2.8134 1.00 2621 144 0.1607 0.1734 REMARK 3 5 2.8134 - 2.6118 1.00 2618 143 0.1572 0.1887 REMARK 3 6 2.6118 - 2.4579 1.00 2603 136 0.1562 0.1688 REMARK 3 7 2.4579 - 2.3348 1.00 2612 134 0.1534 0.1726 REMARK 3 8 2.3348 - 2.2332 1.00 2589 133 0.1851 0.1954 REMARK 3 9 2.2332 - 2.1472 1.00 2587 141 0.1691 0.2337 REMARK 3 10 2.1472 - 2.0731 1.00 2591 120 0.1631 0.2058 REMARK 3 11 2.0731 - 2.0083 1.00 2583 146 0.1650 0.1843 REMARK 3 12 2.0083 - 1.9509 1.00 2559 169 0.1723 0.1775 REMARK 3 13 1.9509 - 1.8996 1.00 2554 171 0.1989 0.2054 REMARK 3 14 1.8996 - 1.8532 1.00 2585 123 0.2067 0.2729 REMARK 3 15 1.8532 - 1.8111 1.00 2549 129 0.1873 0.2511 REMARK 3 16 1.8111 - 1.7726 1.00 2609 128 0.1879 0.2022 REMARK 3 17 1.7726 - 1.7371 1.00 2551 155 0.1954 0.2213 REMARK 3 18 1.7371 - 1.7043 1.00 2589 119 0.1851 0.2214 REMARK 3 19 1.7043 - 1.6739 1.00 2542 151 0.1776 0.2099 REMARK 3 20 1.6739 - 1.6455 1.00 2546 137 0.1935 0.1957 REMARK 3 21 1.6455 - 1.6190 0.99 2508 138 0.1956 0.2120 REMARK 3 22 1.6190 - 1.5941 0.96 2510 125 0.1948 0.2630 REMARK 3 23 1.5941 - 1.5706 0.93 2395 137 0.2049 0.2477 REMARK 3 24 1.5706 - 1.5500 0.90 2302 97 0.2146 0.2159 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3115 REMARK 3 ANGLE : 1.335 4222 REMARK 3 CHIRALITY : 0.067 438 REMARK 3 PLANARITY : 0.007 534 REMARK 3 DIHEDRAL : 14.411 1171 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.4112 10.9649 -9.1906 REMARK 3 T TENSOR REMARK 3 T11: 0.1490 T22: 0.2412 REMARK 3 T33: 0.2111 T12: 0.0147 REMARK 3 T13: 0.0121 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.8999 L22: 1.5787 REMARK 3 L33: 3.2298 L12: -0.7299 REMARK 3 L13: 0.7677 L23: 0.2788 REMARK 3 S TENSOR REMARK 3 S11: 0.1107 S12: 0.0047 S13: -0.0365 REMARK 3 S21: -0.0600 S22: -0.1140 S23: 0.2888 REMARK 3 S31: 0.0148 S32: -0.5250 S33: 0.0740 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.1238 19.6303 -0.3700 REMARK 3 T TENSOR REMARK 3 T11: 0.2064 T22: 0.1632 REMARK 3 T33: 0.1753 T12: 0.0540 REMARK 3 T13: -0.0254 T23: -0.0393 REMARK 3 L TENSOR REMARK 3 L11: 3.9279 L22: 1.5338 REMARK 3 L33: 3.4848 L12: -0.4720 REMARK 3 L13: -2.6588 L23: 0.3627 REMARK 3 S TENSOR REMARK 3 S11: 0.0470 S12: -0.1213 S13: 0.4282 REMARK 3 S21: 0.1238 S22: 0.0519 S23: 0.1210 REMARK 3 S31: -0.3846 S32: -0.2096 S33: -0.0744 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.3049 4.4101 -2.2133 REMARK 3 T TENSOR REMARK 3 T11: 0.1421 T22: 0.1886 REMARK 3 T33: 0.1655 T12: 0.0171 REMARK 3 T13: 0.0043 T23: -0.0335 REMARK 3 L TENSOR REMARK 3 L11: 0.8428 L22: 0.9718 REMARK 3 L33: 1.3511 L12: -0.1138 REMARK 3 L13: 0.0321 L23: -0.4096 REMARK 3 S TENSOR REMARK 3 S11: -0.0179 S12: -0.0556 S13: -0.0172 REMARK 3 S21: 0.0530 S22: 0.0248 S23: 0.1480 REMARK 3 S31: -0.0316 S32: -0.2283 S33: -0.0170 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.3404 1.3924 -6.4217 REMARK 3 T TENSOR REMARK 3 T11: 0.1104 T22: 0.1424 REMARK 3 T33: 0.1249 T12: 0.0179 REMARK 3 T13: -0.0113 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 1.8532 L22: 1.6662 REMARK 3 L33: 2.6446 L12: 0.1489 REMARK 3 L13: 0.0933 L23: -0.7279 REMARK 3 S TENSOR REMARK 3 S11: 0.0117 S12: 0.0887 S13: -0.0997 REMARK 3 S21: -0.0519 S22: -0.0497 S23: 0.0675 REMARK 3 S31: 0.0765 S32: -0.1013 S33: 0.0443 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 199 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.5475 -9.8360 0.0583 REMARK 3 T TENSOR REMARK 3 T11: 0.1800 T22: 0.1720 REMARK 3 T33: 0.1646 T12: 0.0573 REMARK 3 T13: 0.0081 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 1.9820 L22: 2.1126 REMARK 3 L33: 3.3159 L12: 0.4246 REMARK 3 L13: -0.1330 L23: -1.3635 REMARK 3 S TENSOR REMARK 3 S11: 0.0402 S12: -0.0456 S13: -0.1933 REMARK 3 S21: -0.0308 S22: -0.1378 S23: -0.1606 REMARK 3 S31: 0.3312 S32: 0.3435 S33: 0.0931 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 273 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.2765 -13.8016 -3.2280 REMARK 3 T TENSOR REMARK 3 T11: 0.2642 T22: 0.1959 REMARK 3 T33: 0.2194 T12: -0.0677 REMARK 3 T13: -0.0313 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 4.4661 L22: 2.6684 REMARK 3 L33: 2.3376 L12: -0.1449 REMARK 3 L13: -0.3114 L23: -0.1918 REMARK 3 S TENSOR REMARK 3 S11: 0.0320 S12: 0.1379 S13: -0.5435 REMARK 3 S21: -0.1288 S22: -0.0588 S23: 0.3553 REMARK 3 S31: 0.4789 S32: -0.3487 S33: 0.0489 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 317 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.1022 19.8791 1.5586 REMARK 3 T TENSOR REMARK 3 T11: 0.2296 T22: 0.1807 REMARK 3 T33: 0.2376 T12: 0.0802 REMARK 3 T13: -0.0332 T23: -0.0482 REMARK 3 L TENSOR REMARK 3 L11: 0.7882 L22: 3.6781 REMARK 3 L33: 6.1858 L12: -0.0956 REMARK 3 L13: -0.3030 L23: -2.6779 REMARK 3 S TENSOR REMARK 3 S11: 0.0145 S12: -0.0973 S13: 0.2424 REMARK 3 S21: 0.4556 S22: 0.0614 S23: -0.0515 REMARK 3 S31: -0.7329 S32: -0.1253 S33: -0.0947 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'I' AND (RESID 5 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.9320 -8.0812 15.9897 REMARK 3 T TENSOR REMARK 3 T11: 0.1932 T22: 0.2458 REMARK 3 T33: 0.1707 T12: 0.0303 REMARK 3 T13: 0.0010 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 3.0059 L22: 4.3407 REMARK 3 L33: 9.3913 L12: -1.4829 REMARK 3 L13: 3.0086 L23: -6.2611 REMARK 3 S TENSOR REMARK 3 S11: 0.0862 S12: -0.0972 S13: -0.1251 REMARK 3 S21: 0.0350 S22: -0.0714 S23: 0.4346 REMARK 3 S31: 0.0644 S32: 0.1039 S33: 0.0445 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'I' AND (RESID 12 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.8238 4.0180 4.0606 REMARK 3 T TENSOR REMARK 3 T11: 0.1070 T22: 0.1925 REMARK 3 T33: 0.1207 T12: 0.0068 REMARK 3 T13: -0.0057 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 3.9398 L22: 6.4944 REMARK 3 L33: 3.5257 L12: -1.0783 REMARK 3 L13: 1.5760 L23: 1.4275 REMARK 3 S TENSOR REMARK 3 S11: -0.1306 S12: 0.2687 S13: 0.2137 REMARK 3 S21: -0.1767 S22: -0.1271 S23: -0.3094 REMARK 3 S31: -0.2903 S32: 0.2972 S33: 0.1845 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WB8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203253. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65054 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.66700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2GFC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 0.1M HEPES PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.40400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.32200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.93200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.32200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.40400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.93200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 166 50.21 -148.69 REMARK 500 ASP A 184 77.75 62.67 REMARK 500 ASN A 216 -159.52 -140.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 801 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 815 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A 892 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 940 DISTANCE = 6.55 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 171 OD1 REMARK 620 2 ASP A 184 OD2 93.8 REMARK 620 3 ATP A 401 O2G 119.2 87.2 REMARK 620 4 ATP A 401 O3B 177.1 83.9 59.1 REMARK 620 5 ATP A 401 O2A 100.9 90.1 139.9 80.8 REMARK 620 6 HOH A 974 O 93.3 172.9 89.8 89.1 88.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 184 OD1 REMARK 620 2 ASP A 184 OD2 59.7 REMARK 620 3 ATP A 401 O1G 152.4 92.8 REMARK 620 4 ATP A 401 O1B 87.5 89.6 90.4 REMARK 620 5 HOH A 899 O 97.8 157.4 109.7 88.7 REMARK 620 6 HOH A 975 O 90.5 89.5 91.4 178.0 91.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WB5 RELATED DB: PDB REMARK 900 RELATED ID: 4WB6 RELATED DB: PDB REMARK 900 RELATED ID: 4WB7 RELATED DB: PDB DBREF 4WB8 A 15 350 UNP P17612 KAPCA_HUMAN 16 351 DBREF 4WB8 I 5 24 PDB 4WB8 4WB8 5 24 SEQADV 4WB8 GLY A 14 UNP P17612 EXPRESSION TAG SEQRES 1 A 337 GLY VAL LYS GLU PHE LEU ALA LYS ALA LYS GLU ASP PHE SEQRES 2 A 337 LEU LYS LYS TRP GLU SER PRO ALA GLN ASN THR ALA HIS SEQRES 3 A 337 LEU ASP GLN PHE GLU ARG ILE LYS THR LEU GLY THR GLY SEQRES 4 A 337 SER PHE GLY ARG VAL MET LEU VAL LYS HIS LYS GLU THR SEQRES 5 A 337 GLY ASN HIS TYR ALA MET LYS ILE LEU ASP LYS GLN LYS SEQRES 6 A 337 VAL VAL LYS LEU LYS GLN ILE GLU HIS THR LEU ASN GLU SEQRES 7 A 337 LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO PHE LEU VAL SEQRES 8 A 337 LYS LEU GLU PHE SER PHE LYS ASP ASN SER ASN LEU TYR SEQRES 9 A 337 MET VAL MET GLU TYR VAL PRO GLY GLY GLU MET PHE SER SEQRES 10 A 337 HIS LEU ARG ARG ILE GLY ARG PHE SEP GLU PRO HIS ALA SEQRES 11 A 337 ARG PHE TYR ALA ALA GLN ILE VAL LEU THR PHE GLU TYR SEQRES 12 A 337 LEU HIS SER LEU ASP LEU ILE TYR ARG ASP LEU LYS PRO SEQRES 13 A 337 GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR ILE GLN VAL SEQRES 14 A 337 THR ASP PHE GLY PHE ALA LYS ARG VAL LYS GLY ARG THR SEQRES 15 A 337 TRP TPO LEU CYS GLY THR PRO GLU TYR LEU ALA PRO GLU SEQRES 16 A 337 ILE ILE LEU SER LYS GLY TYR ASN LYS ALA VAL ASP TRP SEQRES 17 A 337 TRP ALA LEU GLY VAL LEU ILE TYR GLU MET ALA ALA GLY SEQRES 18 A 337 TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE GLN ILE TYR SEQRES 19 A 337 GLU LYS ILE VAL SER GLY LYS VAL ARG PHE PRO SER HIS SEQRES 20 A 337 PHE SER SER ASP LEU LYS ASP LEU LEU ARG ASN LEU LEU SEQRES 21 A 337 GLN VAL ASP LEU THR LYS ARG PHE GLY ASN LEU LYS ASN SEQRES 22 A 337 GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP PHE ALA THR SEQRES 23 A 337 THR ASP TRP ILE ALA ILE TYR GLN ARG LYS VAL GLU ALA SEQRES 24 A 337 PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY ASP THR SER SEQRES 25 A 337 ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE ARG VAL SEP SEQRES 26 A 337 ILE ASN GLU LYS CYS GLY LYS GLU PHE SER GLU PHE SEQRES 1 I 20 THR THR TYR ALA ASP PHE ILE ALA SER GLY ARG THR GLY SEQRES 2 I 20 ARG ARG ASN ALA ILE HIS ASP MODRES 4WB8 SEP A 139 SER MODIFIED RESIDUE MODRES 4WB8 TPO A 197 THR MODIFIED RESIDUE MODRES 4WB8 SEP A 338 SER MODIFIED RESIDUE HET SEP A 139 10 HET TPO A 197 11 HET SEP A 338 10 HET ATP A 401 31 HET MG A 402 1 HET MG A 403 1 HET MES A 404 12 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 ATP C10 H16 N5 O13 P3 FORMUL 4 MG 2(MG 2+) FORMUL 6 MES C6 H13 N O4 S FORMUL 7 HOH *515(H2 O) HELIX 1 AA1 GLY A 14 SER A 32 1 19 HELIX 2 AA2 HIS A 39 ASP A 41 5 3 HELIX 3 AA3 LYS A 76 LEU A 82 1 7 HELIX 4 AA4 GLN A 84 VAL A 98 1 15 HELIX 5 AA5 GLU A 127 GLY A 136 1 10 HELIX 6 AA6 SEP A 139 LEU A 160 1 22 HELIX 7 AA7 LYS A 168 GLU A 170 5 3 HELIX 8 AA8 THR A 201 LEU A 205 5 5 HELIX 9 AA9 ALA A 206 LEU A 211 1 6 HELIX 10 AB1 LYS A 217 GLY A 234 1 18 HELIX 11 AB2 GLN A 242 GLY A 253 1 12 HELIX 12 AB3 SER A 262 LEU A 273 1 12 HELIX 13 AB4 VAL A 288 ASN A 293 1 6 HELIX 14 AB5 HIS A 294 ALA A 298 5 5 HELIX 15 AB6 ASP A 301 GLN A 307 1 7 HELIX 16 AB7 THR I 6 ALA I 12 1 7 SHEET 1 AA1 5 PHE A 43 THR A 51 0 SHEET 2 AA1 5 ARG A 56 HIS A 62 -1 O LEU A 59 N LYS A 47 SHEET 3 AA1 5 HIS A 68 ASP A 75 -1 O MET A 71 N MET A 58 SHEET 4 AA1 5 ASN A 115 GLU A 121 -1 O MET A 120 N ALA A 70 SHEET 5 AA1 5 LEU A 106 LYS A 111 -1 N PHE A 108 O VAL A 119 SHEET 1 AA2 2 LEU A 162 ILE A 163 0 SHEET 2 AA2 2 LYS A 189 ARG A 190 -1 O LYS A 189 N ILE A 163 SHEET 1 AA3 2 LEU A 172 ILE A 174 0 SHEET 2 AA3 2 ILE A 180 VAL A 182 -1 O GLN A 181 N LEU A 173 LINK C PHE A 138 N SEP A 139 1555 1555 1.33 LINK C SEP A 139 N GLU A 140 1555 1555 1.33 LINK C TRP A 196 N TPO A 197 1555 1555 1.33 LINK C TPO A 197 N LEU A 198 1555 1555 1.33 LINK C VAL A 337 N SEP A 338 1555 1555 1.33 LINK C SEP A 338 N ILE A 339 1555 1555 1.33 LINK OD1 ASN A 171 MG MG A 402 1555 1555 1.98 LINK OD2 ASP A 184 MG MG A 402 1555 1555 2.12 LINK OD1 ASP A 184 MG MG A 403 1555 1555 2.18 LINK OD2 ASP A 184 MG MG A 403 1555 1555 2.26 LINK O2G ATP A 401 MG MG A 402 1555 1555 2.04 LINK O3B ATP A 401 MG MG A 402 1555 1555 2.66 LINK O2A ATP A 401 MG MG A 402 1555 1555 1.98 LINK O1G ATP A 401 MG MG A 403 1555 1555 1.99 LINK O1B ATP A 401 MG MG A 403 1555 1555 2.06 LINK MG MG A 402 O HOH A 974 1555 1555 2.06 LINK MG MG A 403 O HOH A 899 1555 1555 2.04 LINK MG MG A 403 O HOH A 975 1555 1555 2.07 SITE 1 AC1 30 GLY A 50 GLY A 52 SER A 53 PHE A 54 SITE 2 AC1 30 GLY A 55 VAL A 57 ALA A 70 LYS A 72 SITE 3 AC1 30 VAL A 104 MET A 120 GLU A 121 VAL A 123 SITE 4 AC1 30 GLU A 127 ASP A 166 LYS A 168 GLU A 170 SITE 5 AC1 30 ASN A 171 LEU A 173 THR A 183 ASP A 184 SITE 6 AC1 30 PHE A 327 MG A 402 MG A 403 HOH A 703 SITE 7 AC1 30 HOH A 899 HOH A 974 HOH A 975 ARG I 18 SITE 8 AC1 30 ASN I 20 ALA I 21 SITE 1 AC2 4 ASN A 171 ASP A 184 ATP A 401 HOH A 974 SITE 1 AC3 4 ASP A 184 ATP A 401 HOH A 899 HOH A 975 SITE 1 AC4 6 VAL A 15 PHE A 18 TYR A 306 GLN A 307 SITE 2 AC4 6 HOH A 905 HOH A 910 CRYST1 72.808 75.864 80.644 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013735 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013181 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012400 0.00000