HEADER LIGASE 03-SEP-14 4WBD TITLE THE CRYSTAL STRUCTURE OF BSHC FROM BACILLUS SUBTILIS COMPLEXED WITH TITLE 2 CITRATE AND ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: BSHC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UPF0747 PROTEIN YLLA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 ATCC: 23857; SOURCE 6 GENE: YLLA, BSU15120; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS BACILILTHIOL, LIGASE, CYSTEINE, ROSSMANN EXPDTA X-RAY DIFFRACTION AUTHOR P.D.COOK,A.J.VANDUINEN,K.R.WINCHELL REVDAT 5 27-DEC-23 4WBD 1 REMARK REVDAT 4 25-DEC-19 4WBD 1 REMARK REVDAT 3 13-SEP-17 4WBD 1 SOURCE JRNL REMARK REVDAT 2 28-JAN-15 4WBD 1 JRNL REVDAT 1 31-DEC-14 4WBD 0 JRNL AUTH A.J.VANDUINEN,K.R.WINCHELL,M.E.KEITHLY,P.D.COOK JRNL TITL X-RAY CRYSTALLOGRAPHIC STRUCTURE OF BSHC, A UNIQUE ENZYME JRNL TITL 2 INVOLVED IN BACILLITHIOL BIOSYNTHESIS. JRNL REF BIOCHEMISTRY V. 54 100 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25496067 JRNL DOI 10.1021/BI501394Q REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 53595 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2865 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3955 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 197 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4352 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.35000 REMARK 3 B22 (A**2) : -0.57000 REMARK 3 B33 (A**2) : 0.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.95000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.110 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.244 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4510 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4251 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6105 ; 1.673 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9776 ; 0.829 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 543 ; 5.958 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 227 ;36.054 ;24.758 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 798 ;15.601 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;18.910 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 667 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5114 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1055 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2169 ; 2.475 ; 2.094 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2168 ; 2.471 ; 2.093 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2713 ; 3.325 ; 3.131 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4WBD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203514. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56473 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 26.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.47900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M TRIBASIC SODIUM CITRATE, 10% PEG REMARK 280 3350, 7.5 MG/ML, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 21.54642 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.08000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.98542 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 21.54642 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 46.08000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 38.98542 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 125.62284 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 77.97083 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 23 CG CD OE1 OE2 REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 ASP A 37 CG OD1 OD2 REMARK 470 GLU A 148 CG CD OE1 OE2 REMARK 470 ASN A 149 CG OD1 ND2 REMARK 470 SER A 159 OG REMARK 470 TYR A 160 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TRP A 161 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 161 CZ3 CH2 REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 LYS A 272 CG CD CE NZ REMARK 470 ARG A 385 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 480 CG CD CE NZ REMARK 470 TYR A 483 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 486 CG CD CE NZ REMARK 470 ASN A 532 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 212 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 292 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 292 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 MET A 426 CG - SD - CE ANGL. DEV. = -13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 97 4.47 80.42 REMARK 500 ASN A 141 31.08 -98.06 REMARK 500 HIS A 323 57.00 -140.62 REMARK 500 ARG A 404 16.06 -143.01 REMARK 500 ASP A 448 117.42 -163.54 REMARK 500 LYS A 496 57.46 -142.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 861 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A 864 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 888 DISTANCE = 5.89 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 603 DBREF 4WBD A 1 539 UNP P55342 YLLA_BACSU 1 539 SEQADV 4WBD GLY A -1 UNP P55342 EXPRESSION TAG SEQADV 4WBD HIS A 0 UNP P55342 EXPRESSION TAG SEQRES 1 A 541 GLY HIS MET GLN LEU THR GLU LEU SER ILE LYS ASN GLN SEQRES 2 A 541 ASN VAL PHE VAL GLN HIS TYR ILE ASP GLY LYS GLU GLU SEQRES 3 A 541 MET SER SER PHE PHE ASP TYR SER ILE HIS HIS LYS ASP SEQRES 4 A 541 MET TRP ARG GLU ARG LEU GLU ASP LEU SER SER ARG PHE SEQRES 5 A 541 PHE ALA ARG GLU GLU LEU ALA ALA TYR LEU THR SER TYR SEQRES 6 A 541 HIS ASN LYS PHE GLY SER SER ALA MET GLN SER ALA ILE SEQRES 7 A 541 GLU LYS LEU LYS ASP PRO SER SER ALA ALA VAL VAL GLY SEQRES 8 A 541 GLY GLN GLN ALA GLY LEU LEU THR GLY PRO LEU TYR THR SEQRES 9 A 541 ILE HIS LYS ILE ILE SER ILE ILE VAL LEU ALA LYS GLN SEQRES 10 A 541 GLN GLU LYS GLU LEU GLN VAL PRO VAL ILE PRO ILE PHE SEQRES 11 A 541 TRP VAL ALA GLY GLU ASP HIS ASP LEU ASP GLU ILE ASN SEQRES 12 A 541 PHE VAL HIS THR SER GLU GLU ASN GLY PRO VAL LYS LYS SEQRES 13 A 541 LYS LEU PRO GLN SER TYR TRP LYS LYS SER SER ALA ALA SEQRES 14 A 541 SER THR SER LEU ASP GLN GLU LYS CYS ALA ALA TRP ILE SEQRES 15 A 541 ASP ASP VAL PHE ALA ALA PHE GLU GLU THR ASP HIS THR SEQRES 16 A 541 ASN THR LEU LEU ASP ASN VAL LYS ARG CYS LEU ARG GLU SEQRES 17 A 541 SER VAL THR PHE THR ASP PHE PHE GLU LEU LEU ILE ALA SEQRES 18 A 541 ASP LEU PHE GLN GLU GLU GLY LEU VAL LEU LEU ASN SER SEQRES 19 A 541 GLY ASP PRO GLY ILE LYS LYS LEU GLU THR ALA MET PHE SEQRES 20 A 541 GLN LYS ILE LEU ARG GLU ASN ASP GLU LEU ALA ARG ALA SEQRES 21 A 541 VAL SER ASP GLN GLN ALA PHE MET ARG GLN ALA GLY TYR SEQRES 22 A 541 LYS PRO ILE ILE GLU SER GLY LYS GLU GLN ALA ASN LEU SEQRES 23 A 541 PHE TYR GLU TYR GLU ASP GLU ARG PHE LEU ILE GLU LYS SEQRES 24 A 541 ASP ASN GLY ARG PHE VAL ILE LYS GLU LEU ASP LEU GLY SEQRES 25 A 541 TRP THR ARG ASP GLU LEU HIS THR HIS MET GLU GLU HIS SEQRES 26 A 541 PRO GLU ARG PHE SER ASN ASN VAL VAL THR ARG PRO LEU SEQRES 27 A 541 MET GLN GLU PHE LEU ILE PRO THR LEU ALA PHE ILE ALA SEQRES 28 A 541 GLY PRO GLY GLU ILE ASN TYR TRP GLY GLU LEU LYS GLN SEQRES 29 A 541 ALA PHE ALA VAL MET GLY PHE LYS MET PRO PRO VAL MET SEQRES 30 A 541 PRO ARG LEU ASN ILE THR ILE LEU GLU ARG HIS ILE GLU SEQRES 31 A 541 LYS LYS LEU ALA GLU ARG ASN ILE SER LEU GLN ASP ALA SEQRES 32 A 541 ILE GLU ARG GLY THR GLU ASN GLN ARG GLU THR TYR PHE SEQRES 33 A 541 GLU ARG GLN ILE PRO GLU GLU PHE THR ALA VAL MET ASP SEQRES 34 A 541 GLN ALA LYS SER GLN ILE GLU ALA ILE HIS LYS THR VAL SEQRES 35 A 541 ARG GLN GLU ALA LEU LYS VAL ASP GLN SER LEU GLU PRO SEQRES 36 A 541 LEU LEU LEU LYS ASN ALA ALA PHE ILE GLN ASP GLN LEU SEQRES 37 A 541 GLN PHE LEU GLU ARG THR VAL MET LYS ARG ILE GLU GLU SEQRES 38 A 541 LYS GLU GLY TYR VAL LEU LYS ASP TYR GLU ARG ILE GLN SEQRES 39 A 541 ASN SER ILE LYS PRO LEU LEU ALA PRO GLN GLU ARG ILE SEQRES 40 A 541 TRP ASN ILE MET TYR TYR LEU ASN ARG TYR GLY PRO LYS SEQRES 41 A 541 PHE PHE THR THR PHE LYS ASN LEU PRO PHE SER PHE GLN SEQRES 42 A 541 ASN GLN HIS GLN VAL VAL LYS LEU HET ADP A 601 27 HET CIT A 602 13 HET GOL A 603 6 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM CIT CITRIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 CIT C6 H8 O7 FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *230(H2 O) HELIX 1 AA1 ASN A 12 GLY A 21 1 10 HELIX 2 AA2 LYS A 22 PHE A 28 5 7 HELIX 3 AA3 ASP A 37 SER A 48 1 12 HELIX 4 AA4 ALA A 52 ASN A 65 1 14 HELIX 5 AA5 LYS A 66 GLY A 68 5 3 HELIX 6 AA6 SER A 69 LEU A 79 1 11 HELIX 7 AA7 GLY A 94 GLY A 98 5 5 HELIX 8 AA8 PRO A 99 GLN A 121 1 23 HELIX 9 AA9 ASP A 136 ILE A 140 5 5 HELIX 10 AB1 ASP A 172 ALA A 186 1 15 HELIX 11 AB2 HIS A 192 GLU A 206 1 15 HELIX 12 AB3 THR A 209 GLN A 223 1 15 HELIX 13 AB4 GLU A 224 GLY A 226 5 3 HELIX 14 AB5 ASP A 234 GLU A 251 1 18 HELIX 15 AB6 GLU A 251 ALA A 269 1 19 HELIX 16 AB7 LYS A 305 ASP A 308 5 4 HELIX 17 AB8 THR A 312 HIS A 323 1 12 HELIX 18 AB9 THR A 333 ILE A 342 1 10 HELIX 19 AC1 GLY A 350 GLU A 359 1 10 HELIX 20 AC2 LEU A 360 MET A 367 1 8 HELIX 21 AC3 GLU A 384 ARG A 394 1 11 HELIX 22 AC4 SER A 397 GLY A 405 1 9 HELIX 23 AC5 THR A 406 GLN A 417 1 12 HELIX 24 AC6 PRO A 419 LYS A 446 1 28 HELIX 25 AC7 VAL A 447 SER A 450 5 4 HELIX 26 AC8 LEU A 451 GLU A 481 1 31 HELIX 27 AC9 GLU A 481 LYS A 496 1 16 HELIX 28 AD1 PRO A 497 ALA A 500 5 4 HELIX 29 AD2 PRO A 501 TRP A 506 1 6 HELIX 30 AD3 ASN A 507 LEU A 526 1 20 SHEET 1 AA1 3 GLN A 2 LEU A 6 0 SHEET 2 AA1 3 HIS A 534 LYS A 538 -1 O LYS A 538 N GLN A 2 SHEET 3 AA1 3 ILE A 380 LEU A 383 1 N LEU A 383 O VAL A 537 SHEET 1 AA2 5 VAL A 228 ASN A 231 0 SHEET 2 AA2 5 VAL A 124 VAL A 130 1 N PHE A 128 O VAL A 228 SHEET 3 AA2 5 ALA A 85 GLN A 91 1 N VAL A 87 O ILE A 127 SHEET 4 AA2 5 THR A 344 ALA A 349 1 O ILE A 348 N VAL A 88 SHEET 5 AA2 5 VAL A 374 PRO A 376 1 O MET A 375 N PHE A 347 SHEET 1 AA3 2 PHE A 142 GLU A 147 0 SHEET 2 AA3 2 GLY A 150 LYS A 155 -1 O LYS A 154 N VAL A 143 SHEET 1 AA4 5 LEU A 309 TRP A 311 0 SHEET 2 AA4 5 ARG A 301 ILE A 304 -1 N PHE A 302 O TRP A 311 SHEET 3 AA4 5 GLU A 291 ASP A 298 -1 N GLU A 296 O VAL A 303 SHEET 4 AA4 5 GLN A 281 TYR A 288 -1 N TYR A 286 O PHE A 293 SHEET 5 AA4 5 PHE A 327 ASN A 329 -1 O SER A 328 N PHE A 285 SITE 1 AC1 14 SER A 146 GLU A 384 HIS A 386 ILE A 387 SITE 2 AC1 14 ARG A 490 ASN A 493 TRP A 506 TYR A 510 SITE 3 AC1 14 TYR A 511 HOH A 784 HOH A 794 HOH A 801 SITE 4 AC1 14 HOH A 895 HOH A 925 SITE 1 AC2 9 GLN A 91 LYS A 105 GLY A 350 PRO A 351 SITE 2 AC2 9 GLY A 352 GLU A 353 ARG A 377 ARG A 504 SITE 3 AC2 9 GOL A 603 SITE 1 AC3 6 GLY A 90 GLN A 91 ALA A 131 ARG A 334 SITE 2 AC3 6 GLU A 353 CIT A 602 CRYST1 82.530 92.160 87.377 90.00 116.83 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012117 0.000000 0.006128 0.00000 SCALE2 0.000000 0.010851 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012825 0.00000