data_4WCP # _entry.id 4WCP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.291 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4WCP WWPDB D_1000203577 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2018-03-21 _pdbx_database_PDB_obs_spr.pdb_id 5ZEG _pdbx_database_PDB_obs_spr.replace_pdb_id 4WCP _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 4WCQ PDB . unspecified 4WCR PDB . unspecified 4WCS PDB . # _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4WCP _pdbx_database_status.recvd_initial_deposition_date 2014-09-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kondo, J.' 1 'Koganei, M.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'A structural basis for the antibiotic resistance conferred by an A1408me1A mutation in 16S rRNA' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kondo, J.' 1 primary 'Baba, F.' 2 primary 'Koganei, M.' 3 primary 'Kanazawa, H.' 4 # _cell.length_a 159.700 _cell.length_b 46.520 _cell.length_c 38.760 _cell.angle_alpha 90.000 _cell.angle_beta 96.350 _cell.angle_gamma 90.000 _cell.entry_id 4WCP _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WCP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') ; 7369.436 3 ? ? ? ? 2 water nat water 18.015 137 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'UUGCGUC(1MA)CGUCGACGAAGUCGC' _entity_poly.pdbx_seq_one_letter_code_can UUGCGUCACGUCGACGAAGUCGC _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 U n 1 3 G n 1 4 C n 1 5 G n 1 6 U n 1 7 C n 1 8 1MA n 1 9 C n 1 10 G n 1 11 U n 1 12 C n 1 13 G n 1 14 A n 1 15 C n 1 16 G n 1 17 A n 1 18 A n 1 19 G n 1 20 U n 1 21 C n 1 22 G n 1 23 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 23 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4WCP _struct_ref.pdbx_db_accession 4WCP _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4WCP A 1 ? 23 ? 4WCP 1 ? 23 ? 1 23 2 1 4WCP B 1 ? 23 ? 4WCP 24 ? 46 ? 24 46 3 1 4WCP C 1 ? 23 ? 4WCP 1 ? 23 ? 1 23 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1MA 'RNA linking' n "6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O7 P' 361.248 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4WCP _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.24 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 61.99 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Sodium cacodylate, spermine, MPD, Ammonium chloride' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 210r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2012-10-22 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NW12A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline AR-NW12A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4WCP _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.400 _reflns.d_resolution_low 38.530 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 11198 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.400 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.020 _reflns.pdbx_Rmerge_I_obs 0.042 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 22.400 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.950 _reflns.pdbx_scaling_rejects 595 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 79247 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 2.400 2.490 ? 4.700 7599 ? ? 1091 ? 99.500 ? ? ? ? 0.330 ? ? ? ? ? ? ? ? 6.860 ? 1.330 ? ? ? ? 113 1 1 ? ? 2.490 2.590 ? 5.600 7926 ? ? 1156 ? 99.400 ? ? ? ? 0.257 ? ? ? ? ? ? ? ? 6.810 ? 1.220 ? ? ? ? 59 2 1 ? ? 2.590 2.700 ? 7.600 7582 ? ? 1073 ? 99.700 ? ? ? ? 0.183 ? ? ? ? ? ? ? ? 6.990 ? 1.160 ? ? ? ? 80 3 1 ? ? 2.700 2.850 ? 9.000 7855 ? ? 1123 ? 99.400 ? ? ? ? 0.141 ? ? ? ? ? ? ? ? 6.940 ? 1.000 ? ? ? ? 60 4 1 ? ? 2.850 3.020 ? 13.300 7912 ? ? 1124 ? 99.900 ? ? ? ? 0.085 ? ? ? ? ? ? ? ? 7.010 ? 0.920 ? ? ? ? 36 5 1 ? ? 3.020 3.260 ? 21.100 7924 ? ? 1109 ? 99.700 ? ? ? ? 0.054 ? ? ? ? ? ? ? ? 7.100 ? 0.830 ? ? ? ? 49 6 1 ? ? 3.260 3.580 ? 26.100 8176 ? ? 1129 ? 99.800 ? ? ? ? 0.044 ? ? ? ? ? ? ? ? 7.210 ? 0.800 ? ? ? ? 33 7 1 ? ? 3.580 4.100 ? 33.600 8111 ? ? 1114 ? 99.600 ? ? ? ? 0.036 ? ? ? ? ? ? ? ? 7.190 ? 0.780 ? ? ? ? 105 8 1 ? ? 4.100 5.170 ? 43.900 8310 ? ? 1145 ? 99.900 ? ? ? ? 0.029 ? ? ? ? ? ? ? ? 7.230 ? 0.760 ? ? ? ? 31 9 1 ? ? 5.170 38.530 ? 56.400 7852 ? ? 1134 ? 96.700 ? ? ? ? 0.022 ? ? ? ? ? ? ? ? 6.900 ? 0.740 ? ? ? ? 29 10 1 ? ? # _refine.aniso_B[1][1] -1.4450 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -6.2600 _refine.aniso_B[2][2] -0.7890 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 2.2340 _refine.B_iso_max 79.450 _refine.B_iso_mean 39.8042 _refine.B_iso_min 24.360 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4WCP _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.4000 _refine.ls_d_res_low 38.53 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 11197 _refine.ls_number_reflns_R_free 1155 _refine.ls_number_reflns_R_work 10042 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.3000 _refine.ls_percent_reflns_R_free 10.2000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2525 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2275 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol 53.4991 _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set 0.8189 # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.4000 _refine_hist.d_res_low 38.53 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 137 _refine_hist.number_atoms_total 1598 _refine_hist.pdbx_number_residues_total 69 _refine_hist.pdbx_B_iso_mean_solvent 44.21 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1461 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.004 ? ? ? c_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.835 ? ? ? c_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.000 1.500 ? ? c_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 1.629 2.000 ? ? c_scbond_it ? ? 'X-RAY DIFFRACTION' ? 0.000 2.000 ? ? c_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 2.406 2.500 ? ? c_scangle_it ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error 'X-RAY DIFFRACTION' 2.4000 2.4900 . . 107 983 99.5000 . . . 0.4650 . 0.5061 . . . . . . . . 'X-RAY DIFFRACTION' 2.4900 2.5900 . . 130 1026 99.4000 . . . 0.4734 . 0.4775 . . . . . . . . 'X-RAY DIFFRACTION' 2.5900 2.7000 . . 113 960 99.7000 . . . 0.3950 . 0.4067 . . . . . . . . 'X-RAY DIFFRACTION' 2.7000 2.8500 . . 115 1009 99.4000 . . . 0.4364 . 0.3825 . . . . . . . . 'X-RAY DIFFRACTION' 2.8500 3.0200 . . 113 1011 99.9000 . . . 0.3150 . 0.2767 . . . . . . . . 'X-RAY DIFFRACTION' 3.0200 3.2600 . . 103 1007 99.7000 . . . 0.2510 . 0.2293 . . . . . . . . 'X-RAY DIFFRACTION' 3.2600 3.5900 . . 111 1019 99.8000 . . . 0.2548 . 0.2215 . . . . . . . . 'X-RAY DIFFRACTION' 3.5900 4.1000 . . 112 1001 99.6000 . . . 0.2340 . 0.1970 . . . . . . . . 'X-RAY DIFFRACTION' 4.1000 5.1700 . . 122 1021 99.7000 . . . 0.1778 . 0.1454 . . . . . . . . 'X-RAY DIFFRACTION' 5.1700 38.53 . . 129 1005 96.4000 . . . 0.1839 . 0.1682 . . . . . . . . # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 dna-rna_1MA_free.param ? 'X-RAY DIFFRACTION' 2 CNS_TOPPAR:water_rep.param ? 'X-RAY DIFFRACTION' 3 CNS_TOPPAR:ion.param ? # _struct.entry_id 4WCP _struct.title 'Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site' _struct.pdbx_descriptor ;RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4WCP _struct_keywords.text 'ribosome, RNA, aminoglycoside, antibiotic-resistance' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A C 7 "O3'" ? ? ? 1_555 A 1MA 8 P ? ? A C 7 A 1MA 8 1_555 ? ? ? ? ? ? ? 1.606 ? covale2 covale both ? A 1MA 8 "O3'" ? ? ? 1_555 A C 9 P ? ? A 1MA 8 A C 9 1_555 ? ? ? ? ? ? ? 1.606 ? covale3 covale both ? B C 7 "O3'" ? ? ? 1_555 B 1MA 8 P ? ? B C 30 B 1MA 31 1_555 ? ? ? ? ? ? ? 1.609 ? covale4 covale both ? B 1MA 8 "O3'" ? ? ? 1_555 B C 9 P ? ? B 1MA 31 B C 32 1_555 ? ? ? ? ? ? ? 1.611 ? covale5 covale both ? C C 7 "O3'" ? ? ? 1_555 C 1MA 8 P ? ? C C 7 C 1MA 8 1_555 ? ? ? ? ? ? ? 1.618 ? covale6 covale both ? C 1MA 8 "O3'" ? ? ? 1_555 C C 9 P ? ? C 1MA 8 C C 9 1_555 ? ? ? ? ? ? ? 1.606 ? hydrog1 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 23 N3 ? ? A G 3 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 23 O2 ? ? A G 3 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 23 N4 ? ? A G 3 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 22 N1 ? ? A C 4 B G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 22 O6 ? ? A C 4 B G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 22 N2 ? ? A C 4 B G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 21 N3 ? ? A G 5 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 21 O2 ? ? A G 5 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 21 N4 ? ? A G 5 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A U 6 N3 ? ? ? 1_555 B U 20 O2 ? ? A U 6 B U 43 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? hydrog11 hydrog ? ? A U 6 O4 ? ? ? 1_555 B U 20 N3 ? ? A U 6 B U 43 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? hydrog12 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 19 N1 ? ? A C 7 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 19 O6 ? ? A C 7 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 19 N2 ? ? A C 7 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A C 9 N3 ? ? ? 1_555 B G 16 N1 ? ? A C 9 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A C 9 N4 ? ? ? 1_555 B G 16 O6 ? ? A C 9 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A C 9 O2 ? ? ? 1_555 B G 16 N2 ? ? A C 9 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 15 N3 ? ? A G 10 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 15 O2 ? ? A G 10 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 15 N4 ? ? A G 10 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A U 11 N3 ? ? ? 1_555 B A 14 N1 ? ? A U 11 B A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A U 11 O4 ? ? ? 1_555 B A 14 N6 ? ? A U 11 B A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 13 N1 ? ? A C 12 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 13 O6 ? ? A C 12 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 13 N2 ? ? A C 12 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 13 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 13 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 13 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A A 14 N1 ? ? ? 1_555 B U 11 N3 ? ? A A 14 B U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A A 14 N6 ? ? ? 1_555 B U 11 O4 ? ? A A 14 B U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A C 15 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 15 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A C 15 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 15 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? A C 15 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 15 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? A G 16 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 16 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? A G 16 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 16 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? A G 16 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 16 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? A A 17 N1 ? ? ? 1_555 C U 2 N3 ? ? A A 17 C U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? A A 17 N6 ? ? ? 1_555 C U 2 O4 ? ? A A 17 C U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? A A 18 N1 ? ? ? 1_555 C U 1 N3 ? ? A A 18 C U 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? A A 18 N6 ? ? ? 1_555 C U 1 O4 ? ? A A 18 C U 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog41 hydrog ? ? A G 19 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 19 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog42 hydrog ? ? A G 19 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 19 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog43 hydrog ? ? A G 19 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 19 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog44 hydrog ? ? A U 20 N3 ? ? ? 1_555 B U 6 O2 ? ? A U 20 B U 29 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? hydrog45 hydrog ? ? A U 20 O4 ? ? ? 1_555 B U 6 N3 ? ? A U 20 B U 29 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? hydrog46 hydrog ? ? A C 21 N3 ? ? ? 1_555 B G 5 N1 ? ? A C 21 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog47 hydrog ? ? A C 21 N4 ? ? ? 1_555 B G 5 O6 ? ? A C 21 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog48 hydrog ? ? A C 21 O2 ? ? ? 1_555 B G 5 N2 ? ? A C 21 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog49 hydrog ? ? A G 22 N1 ? ? ? 1_555 B C 4 N3 ? ? A G 22 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog50 hydrog ? ? A G 22 N2 ? ? ? 1_555 B C 4 O2 ? ? A G 22 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog51 hydrog ? ? A G 22 O6 ? ? ? 1_555 B C 4 N4 ? ? A G 22 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog52 hydrog ? ? A C 23 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 23 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog53 hydrog ? ? A C 23 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 23 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog54 hydrog ? ? A C 23 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 23 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog55 hydrog ? ? C G 3 N1 ? ? ? 1_555 C C 23 N3 ? ? C G 3 C C 23 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog56 hydrog ? ? C G 3 N2 ? ? ? 1_555 C C 23 O2 ? ? C G 3 C C 23 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog57 hydrog ? ? C G 3 O6 ? ? ? 1_555 C C 23 N4 ? ? C G 3 C C 23 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog58 hydrog ? ? C C 4 N3 ? ? ? 1_555 C G 22 N1 ? ? C C 4 C G 22 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog59 hydrog ? ? C C 4 N4 ? ? ? 1_555 C G 22 O6 ? ? C C 4 C G 22 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog60 hydrog ? ? C C 4 O2 ? ? ? 1_555 C G 22 N2 ? ? C C 4 C G 22 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog61 hydrog ? ? C G 5 N1 ? ? ? 1_555 C C 21 N3 ? ? C G 5 C C 21 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog62 hydrog ? ? C G 5 N2 ? ? ? 1_555 C C 21 O2 ? ? C G 5 C C 21 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog63 hydrog ? ? C G 5 O6 ? ? ? 1_555 C C 21 N4 ? ? C G 5 C C 21 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog64 hydrog ? ? C U 6 N3 ? ? ? 1_555 C U 20 O4 ? ? C U 6 C U 20 2_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? hydrog65 hydrog ? ? C U 6 O2 ? ? ? 1_555 C U 20 N3 ? ? C U 6 C U 20 2_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? hydrog66 hydrog ? ? C C 7 N3 ? ? ? 1_555 C G 19 N1 ? ? C C 7 C G 19 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog67 hydrog ? ? C C 7 N4 ? ? ? 1_555 C G 19 O6 ? ? C C 7 C G 19 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog68 hydrog ? ? C C 7 O2 ? ? ? 1_555 C G 19 N2 ? ? C C 7 C G 19 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog69 hydrog ? ? C C 9 N3 ? ? ? 1_555 C G 16 N1 ? ? C C 9 C G 16 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog70 hydrog ? ? C C 9 N4 ? ? ? 1_555 C G 16 O6 ? ? C C 9 C G 16 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog71 hydrog ? ? C C 9 O2 ? ? ? 1_555 C G 16 N2 ? ? C C 9 C G 16 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog72 hydrog ? ? C G 10 N1 ? ? ? 1_555 C C 15 N3 ? ? C G 10 C C 15 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog73 hydrog ? ? C G 10 N2 ? ? ? 1_555 C C 15 O2 ? ? C G 10 C C 15 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog74 hydrog ? ? C G 10 O6 ? ? ? 1_555 C C 15 N4 ? ? C G 10 C C 15 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog75 hydrog ? ? C U 11 N3 ? ? ? 1_555 C A 14 N1 ? ? C U 11 C A 14 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog76 hydrog ? ? C U 11 O4 ? ? ? 1_555 C A 14 N6 ? ? C U 11 C A 14 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog77 hydrog ? ? C C 12 N3 ? ? ? 1_555 C G 13 N1 ? ? C C 12 C G 13 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog78 hydrog ? ? C C 12 N4 ? ? ? 1_555 C G 13 O6 ? ? C C 12 C G 13 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog79 hydrog ? ? C C 12 O2 ? ? ? 1_555 C G 13 N2 ? ? C C 12 C G 13 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog80 hydrog ? ? C G 13 N1 ? ? ? 1_555 C C 12 N3 ? ? C G 13 C C 12 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog81 hydrog ? ? C G 13 N2 ? ? ? 1_555 C C 12 O2 ? ? C G 13 C C 12 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog82 hydrog ? ? C G 13 O6 ? ? ? 1_555 C C 12 N4 ? ? C G 13 C C 12 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog83 hydrog ? ? C A 14 N1 ? ? ? 1_555 C U 11 N3 ? ? C A 14 C U 11 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog84 hydrog ? ? C A 14 N6 ? ? ? 1_555 C U 11 O4 ? ? C A 14 C U 11 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog85 hydrog ? ? C C 15 N3 ? ? ? 1_555 C G 10 N1 ? ? C C 15 C G 10 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog86 hydrog ? ? C C 15 N4 ? ? ? 1_555 C G 10 O6 ? ? C C 15 C G 10 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog87 hydrog ? ? C C 15 O2 ? ? ? 1_555 C G 10 N2 ? ? C C 15 C G 10 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog88 hydrog ? ? C G 16 N1 ? ? ? 1_555 C C 9 N3 ? ? C G 16 C C 9 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog89 hydrog ? ? C G 16 N2 ? ? ? 1_555 C C 9 O2 ? ? C G 16 C C 9 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog90 hydrog ? ? C G 16 O6 ? ? ? 1_555 C C 9 N4 ? ? C G 16 C C 9 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog91 hydrog ? ? C G 19 N1 ? ? ? 1_555 C C 7 N3 ? ? C G 19 C C 7 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog92 hydrog ? ? C G 19 N2 ? ? ? 1_555 C C 7 O2 ? ? C G 19 C C 7 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog93 hydrog ? ? C G 19 O6 ? ? ? 1_555 C C 7 N4 ? ? C G 19 C C 7 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog94 hydrog ? ? C U 20 N3 ? ? ? 1_555 C U 6 O2 ? ? C U 20 C U 6 2_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? hydrog95 hydrog ? ? C U 20 O4 ? ? ? 1_555 C U 6 N3 ? ? C U 20 C U 6 2_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? hydrog96 hydrog ? ? C C 21 N3 ? ? ? 1_555 C G 5 N1 ? ? C C 21 C G 5 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog97 hydrog ? ? C C 21 N4 ? ? ? 1_555 C G 5 O6 ? ? C C 21 C G 5 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog98 hydrog ? ? C C 21 O2 ? ? ? 1_555 C G 5 N2 ? ? C C 21 C G 5 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog99 hydrog ? ? C G 22 N1 ? ? ? 1_555 C C 4 N3 ? ? C G 22 C C 4 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog100 hydrog ? ? C G 22 N2 ? ? ? 1_555 C C 4 O2 ? ? C G 22 C C 4 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog101 hydrog ? ? C G 22 O6 ? ? ? 1_555 C C 4 N4 ? ? C G 22 C C 4 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog102 hydrog ? ? C C 23 N3 ? ? ? 1_555 C G 3 N1 ? ? C C 23 C G 3 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog103 hydrog ? ? C C 23 N4 ? ? ? 1_555 C G 3 O6 ? ? C C 23 C G 3 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog104 hydrog ? ? C C 23 O2 ? ? ? 1_555 C G 3 N2 ? ? C C 23 C G 3 2_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 4WCP _atom_sites.fract_transf_matrix[1][1] 0.006262 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000697 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021496 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025959 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 1 U U A . n A 1 2 U 2 2 2 U U A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 C 7 7 7 C C A . n A 1 8 1MA 8 8 8 1MA 1MA A . n A 1 9 C 9 9 9 C C A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 C 12 12 12 C C A . n A 1 13 G 13 13 13 G G A . n A 1 14 A 14 14 14 A A A . n A 1 15 C 15 15 15 C C A . n A 1 16 G 16 16 16 G G A . n A 1 17 A 17 17 17 A A A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 C 21 21 21 C C A . n A 1 22 G 22 22 22 G G A . n A 1 23 C 23 23 23 C C A . n B 1 1 U 1 24 24 U U B . n B 1 2 U 2 25 25 U U B . n B 1 3 G 3 26 26 G G B . n B 1 4 C 4 27 27 C C B . n B 1 5 G 5 28 28 G G B . n B 1 6 U 6 29 29 U U B . n B 1 7 C 7 30 30 C C B . n B 1 8 1MA 8 31 31 1MA 1MA B . n B 1 9 C 9 32 32 C C B . n B 1 10 G 10 33 33 G G B . n B 1 11 U 11 34 34 U U B . n B 1 12 C 12 35 35 C C B . n B 1 13 G 13 36 36 G G B . n B 1 14 A 14 37 37 A A B . n B 1 15 C 15 38 38 C C B . n B 1 16 G 16 39 39 G G B . n B 1 17 A 17 40 40 A A B . n B 1 18 A 18 41 41 A A B . n B 1 19 G 19 42 42 G G B . n B 1 20 U 20 43 43 U U B . n B 1 21 C 21 44 44 C C B . n B 1 22 G 22 45 45 G G B . n B 1 23 C 23 46 46 C C B . n C 1 1 U 1 1 1 U U C . n C 1 2 U 2 2 2 U U C . n C 1 3 G 3 3 3 G G C . n C 1 4 C 4 4 4 C C C . n C 1 5 G 5 5 5 G G C . n C 1 6 U 6 6 6 U U C . n C 1 7 C 7 7 7 C C C . n C 1 8 1MA 8 8 8 1MA 1MA C . n C 1 9 C 9 9 9 C C C . n C 1 10 G 10 10 10 G G C . n C 1 11 U 11 11 11 U U C . n C 1 12 C 12 12 12 C C C . n C 1 13 G 13 13 13 G G C . n C 1 14 A 14 14 14 A A C . n C 1 15 C 15 15 15 C C C . n C 1 16 G 16 16 16 G G C . n C 1 17 A 17 17 17 A A C . n C 1 18 A 18 18 18 A A C . n C 1 19 G 19 19 19 G G C . n C 1 20 U 20 20 20 U U C . n C 1 21 C 21 21 21 C C C . n C 1 22 G 22 22 22 G G C . n C 1 23 C 23 23 23 C C C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HOH 1 101 104 HOH HOH A . D 2 HOH 2 102 207 HOH HOH A . D 2 HOH 3 103 177 HOH HOH A . D 2 HOH 4 104 105 HOH HOH A . D 2 HOH 5 105 115 HOH HOH A . D 2 HOH 6 106 234 HOH HOH A . D 2 HOH 7 107 154 HOH HOH A . D 2 HOH 8 108 183 HOH HOH A . D 2 HOH 9 109 137 HOH HOH A . D 2 HOH 10 110 151 HOH HOH A . D 2 HOH 11 111 171 HOH HOH A . D 2 HOH 12 112 201 HOH HOH A . D 2 HOH 13 113 217 HOH HOH A . D 2 HOH 14 114 103 HOH HOH A . D 2 HOH 15 115 107 HOH HOH A . D 2 HOH 16 116 108 HOH HOH A . D 2 HOH 17 117 109 HOH HOH A . D 2 HOH 18 118 110 HOH HOH A . D 2 HOH 19 119 111 HOH HOH A . D 2 HOH 20 120 112 HOH HOH A . D 2 HOH 21 121 113 HOH HOH A . D 2 HOH 22 122 117 HOH HOH A . D 2 HOH 23 123 122 HOH HOH A . D 2 HOH 24 124 135 HOH HOH A . D 2 HOH 25 125 138 HOH HOH A . D 2 HOH 26 126 143 HOH HOH A . D 2 HOH 27 127 144 HOH HOH A . D 2 HOH 28 128 145 HOH HOH A . D 2 HOH 29 129 147 HOH HOH A . D 2 HOH 30 130 148 HOH HOH A . D 2 HOH 31 131 149 HOH HOH A . D 2 HOH 32 132 152 HOH HOH A . D 2 HOH 33 133 153 HOH HOH A . D 2 HOH 34 134 155 HOH HOH A . D 2 HOH 35 135 157 HOH HOH A . D 2 HOH 36 136 161 HOH HOH A . D 2 HOH 37 137 163 HOH HOH A . D 2 HOH 38 138 165 HOH HOH A . D 2 HOH 39 139 166 HOH HOH A . D 2 HOH 40 140 169 HOH HOH A . D 2 HOH 41 141 170 HOH HOH A . D 2 HOH 42 142 173 HOH HOH A . D 2 HOH 43 143 174 HOH HOH A . D 2 HOH 44 144 175 HOH HOH A . D 2 HOH 45 145 180 HOH HOH A . D 2 HOH 46 146 182 HOH HOH A . D 2 HOH 47 147 184 HOH HOH A . D 2 HOH 48 148 190 HOH HOH A . D 2 HOH 49 149 194 HOH HOH A . D 2 HOH 50 150 195 HOH HOH A . D 2 HOH 51 151 202 HOH HOH A . D 2 HOH 52 152 204 HOH HOH A . D 2 HOH 53 153 209 HOH HOH A . D 2 HOH 54 154 210 HOH HOH A . D 2 HOH 55 155 228 HOH HOH A . D 2 HOH 56 156 232 HOH HOH A . D 2 HOH 57 157 237 HOH HOH A . E 2 HOH 1 101 102 HOH HOH B . E 2 HOH 2 102 139 HOH HOH B . E 2 HOH 3 103 225 HOH HOH B . E 2 HOH 4 104 127 HOH HOH B . E 2 HOH 5 105 224 HOH HOH B . E 2 HOH 6 106 235 HOH HOH B . E 2 HOH 7 107 230 HOH HOH B . E 2 HOH 8 108 142 HOH HOH B . E 2 HOH 9 109 172 HOH HOH B . E 2 HOH 10 110 236 HOH HOH B . E 2 HOH 11 111 120 HOH HOH B . E 2 HOH 12 112 203 HOH HOH B . E 2 HOH 13 113 211 HOH HOH B . E 2 HOH 14 114 200 HOH HOH B . E 2 HOH 15 115 168 HOH HOH B . E 2 HOH 16 116 106 HOH HOH B . E 2 HOH 17 117 114 HOH HOH B . E 2 HOH 18 118 116 HOH HOH B . E 2 HOH 19 119 118 HOH HOH B . E 2 HOH 20 120 119 HOH HOH B . E 2 HOH 21 121 121 HOH HOH B . E 2 HOH 22 122 123 HOH HOH B . E 2 HOH 23 123 125 HOH HOH B . E 2 HOH 24 124 129 HOH HOH B . E 2 HOH 25 125 130 HOH HOH B . E 2 HOH 26 126 131 HOH HOH B . E 2 HOH 27 127 133 HOH HOH B . E 2 HOH 28 128 136 HOH HOH B . E 2 HOH 29 129 140 HOH HOH B . E 2 HOH 30 130 141 HOH HOH B . E 2 HOH 31 131 150 HOH HOH B . E 2 HOH 32 132 156 HOH HOH B . E 2 HOH 33 133 159 HOH HOH B . E 2 HOH 34 134 160 HOH HOH B . E 2 HOH 35 135 162 HOH HOH B . E 2 HOH 36 136 164 HOH HOH B . E 2 HOH 37 137 176 HOH HOH B . E 2 HOH 38 138 181 HOH HOH B . E 2 HOH 39 139 186 HOH HOH B . E 2 HOH 40 140 187 HOH HOH B . E 2 HOH 41 141 191 HOH HOH B . E 2 HOH 42 142 196 HOH HOH B . E 2 HOH 43 143 197 HOH HOH B . E 2 HOH 44 144 198 HOH HOH B . E 2 HOH 45 145 199 HOH HOH B . E 2 HOH 46 146 205 HOH HOH B . E 2 HOH 47 147 206 HOH HOH B . E 2 HOH 48 148 219 HOH HOH B . E 2 HOH 49 149 220 HOH HOH B . E 2 HOH 50 150 226 HOH HOH B . E 2 HOH 51 151 227 HOH HOH B . E 2 HOH 52 152 229 HOH HOH B . E 2 HOH 53 153 231 HOH HOH B . E 2 HOH 54 154 233 HOH HOH B . F 2 HOH 1 101 179 HOH HOH C . F 2 HOH 2 102 101 HOH HOH C . F 2 HOH 3 103 124 HOH HOH C . F 2 HOH 4 104 221 HOH HOH C . F 2 HOH 5 105 185 HOH HOH C . F 2 HOH 6 106 134 HOH HOH C . F 2 HOH 7 107 189 HOH HOH C . F 2 HOH 8 108 214 HOH HOH C . F 2 HOH 9 109 132 HOH HOH C . F 2 HOH 10 110 128 HOH HOH C . F 2 HOH 11 111 146 HOH HOH C . F 2 HOH 12 112 208 HOH HOH C . F 2 HOH 13 113 188 HOH HOH C . F 2 HOH 14 114 193 HOH HOH C . F 2 HOH 15 115 158 HOH HOH C . F 2 HOH 16 116 215 HOH HOH C . F 2 HOH 17 117 216 HOH HOH C . F 2 HOH 18 118 192 HOH HOH C . F 2 HOH 19 119 222 HOH HOH C . F 2 HOH 20 120 218 HOH HOH C . F 2 HOH 21 121 126 HOH HOH C . F 2 HOH 22 122 167 HOH HOH C . F 2 HOH 23 123 178 HOH HOH C . F 2 HOH 24 124 212 HOH HOH C . F 2 HOH 25 125 213 HOH HOH C . F 2 HOH 26 126 223 HOH HOH C . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,D,E 2 1,2 C,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3410 ? 1 MORE -11 ? 1 'SSA (A^2)' 8270 ? 2 'ABSA (A^2)' 3250 ? 2 MORE -8 ? 2 'SSA (A^2)' 8710 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-09-09 2 'Structure model' 1 1 2018-03-21 3 'Structure model' 1 2 2018-03-28 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Data collection' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' Other 5 2 'Structure model' 'Refinement description' 6 3 'Structure model' Advisory 7 3 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' diffrn_source 2 2 'Structure model' pdbx_database_PDB_obs_spr 3 2 'Structure model' pdbx_database_status 4 2 'Structure model' pdbx_struct_oper_list 5 2 'Structure model' software 6 3 'Structure model' pdbx_database_PDB_obs_spr # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 2 'Structure model' '_pdbx_database_status.status_code' 3 2 'Structure model' '_pdbx_database_status.status_code_sf' 4 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 5 2 'Structure model' '_software.name' 6 3 'Structure model' '_pdbx_database_PDB_obs_spr.pdb_id' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? CNS ? ? ? . 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 2 ? 'data processing' ? ? ? ? ? ? ? ? ? ? ? CrystalClear ? ? ? . 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? CrystalClear ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 6 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? d*TREK ? ? ? . 7 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? d*TREK ? ? ? . 8 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 9 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4WCP 'double helix' 4WCP 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 3 1_555 B C 23 1_555 -0.127 -0.084 0.284 1.433 -6.064 -0.529 1 A_G3:C46_B A 3 ? B 46 ? 19 1 1 A C 4 1_555 B G 22 1_555 0.131 -0.133 0.177 5.412 -10.349 0.519 2 A_C4:G45_B A 4 ? B 45 ? 19 1 1 A G 5 1_555 B C 21 1_555 -0.232 -0.160 -0.215 -4.961 -11.592 4.663 3 A_G5:C44_B A 5 ? B 44 ? 19 1 1 A U 6 1_555 B U 20 1_555 -2.391 -1.743 -0.266 4.038 -15.428 3.041 4 A_U6:U43_B A 6 ? B 43 ? 16 1 1 A C 7 1_555 B G 19 1_555 0.323 -0.111 -0.220 -3.047 -7.755 3.963 5 A_C7:G42_B A 7 ? B 42 ? 19 1 1 A C 9 1_555 B G 16 1_555 0.131 -0.236 0.151 4.893 -21.826 -0.613 6 A_C9:G39_B A 9 ? B 39 ? 19 1 1 A G 10 1_555 B C 15 1_555 -0.430 -0.081 0.024 -4.454 -14.667 3.851 7 A_G10:C38_B A 10 ? B 38 ? 19 1 1 A U 11 1_555 B A 14 1_555 -0.081 -0.087 0.141 -3.224 -16.888 2.066 8 A_U11:A37_B A 11 ? B 37 ? 20 1 1 A C 12 1_555 B G 13 1_555 0.270 -0.221 0.177 -1.412 -8.887 -0.073 9 A_C12:G36_B A 12 ? B 36 ? 19 1 1 A G 13 1_555 B C 12 1_555 -0.150 -0.222 0.039 -4.315 -12.028 0.385 10 A_G13:C35_B A 13 ? B 35 ? 19 1 1 A A 14 1_555 B U 11 1_555 -0.205 -0.005 0.303 3.988 -14.748 1.829 11 A_A14:U34_B A 14 ? B 34 ? 20 1 1 A C 15 1_555 B G 10 1_555 0.562 -0.100 0.101 3.259 -16.606 4.633 12 A_C15:G33_B A 15 ? B 33 ? 19 1 1 A G 16 1_555 B C 9 1_555 -0.090 -0.127 -0.274 -5.132 -14.039 3.154 13 A_G16:C32_B A 16 ? B 32 ? 19 1 1 A G 19 1_555 B C 7 1_555 -0.377 -0.136 -0.288 8.107 -9.338 1.941 14 A_G19:C30_B A 19 ? B 30 ? 19 1 1 A A 17 1_555 C U 2 1_555 -0.168 0.009 -0.178 5.110 -6.313 3.752 15 A_A17:U2_C A 17 ? C 2 ? 20 1 1 A A 18 1_555 C U 1 1_555 -0.163 0.084 -0.855 -23.058 -15.516 12.097 16 A_A18:U1_C A 18 ? C 1 ? 20 1 1 A U 20 1_555 B U 6 1_555 -2.359 -1.787 0.399 -11.601 -14.874 4.700 17 A_U20:U29_B A 20 ? B 29 ? 16 1 1 A C 21 1_555 B G 5 1_555 -0.329 -0.149 0.072 -2.666 -12.530 1.040 18 A_C21:G28_B A 21 ? B 28 ? 19 1 1 A G 22 1_555 B C 4 1_555 0.044 -0.058 -0.338 -10.316 -9.602 -0.753 19 A_G22:C27_B A 22 ? B 27 ? 19 1 1 A C 23 1_555 B G 3 1_555 0.164 -0.098 -0.228 1.139 -7.111 -0.976 20 A_C23:G26_B A 23 ? B 26 ? 19 1 1 C G 3 1_555 C C 23 2_555 -0.019 -0.196 0.166 -4.354 -7.288 -1.354 21 C_G3:C23_C C 3 ? C 23 ? 19 1 1 C C 4 1_555 C G 22 2_555 0.064 -0.056 -0.014 5.747 -7.335 0.319 22 C_C4:G22_C C 4 ? C 22 ? 19 1 1 C G 5 1_555 C C 21 2_555 -0.129 -0.162 0.182 0.966 -22.476 2.854 23 C_G5:C21_C C 5 ? C 21 ? 19 1 1 C U 6 1_555 C U 20 2_555 2.279 -1.867 0.253 -1.774 -13.260 4.528 24 C_U6:U20_C C 6 ? C 20 ? 16 1 1 C C 7 1_555 C G 19 2_555 0.070 -0.312 0.055 -6.328 -5.122 -4.258 25 C_C7:G19_C C 7 ? C 19 ? 19 1 1 C C 9 1_555 C G 16 2_555 0.313 -0.055 0.114 4.085 -10.916 1.007 26 C_C9:G16_C C 9 ? C 16 ? 19 1 1 C G 10 1_555 C C 15 2_555 0.149 0.150 0.153 -2.206 -18.516 9.910 27 C_G10:C15_C C 10 ? C 15 ? 19 1 1 C U 11 1_555 C A 14 2_555 -0.051 -0.287 0.003 -3.945 -14.952 1.261 28 C_U11:A14_C C 11 ? C 14 ? 20 1 1 C C 12 1_555 C G 13 2_555 0.217 -0.216 -0.205 -1.848 -8.476 -0.176 29 C_C12:G13_C C 12 ? C 13 ? 19 1 1 C G 13 1_555 C C 12 2_555 -0.217 -0.216 -0.205 1.848 -8.476 -0.176 30 C_G13:C12_C C 13 ? C 12 ? 19 1 1 C A 14 1_555 C U 11 2_555 0.051 -0.287 0.003 3.945 -14.952 1.261 31 C_A14:U11_C C 14 ? C 11 ? 20 1 1 C C 15 1_555 C G 10 2_555 -0.149 0.150 0.153 2.206 -18.516 9.910 32 C_C15:G10_C C 15 ? C 10 ? 19 1 1 C G 16 1_555 C C 9 2_555 -0.313 -0.055 0.114 -4.085 -10.916 1.007 33 C_G16:C9_C C 16 ? C 9 ? 19 1 1 C G 19 1_555 C C 7 2_555 -0.070 -0.312 0.055 6.329 -5.122 -4.258 34 C_G19:C7_C C 19 ? C 7 ? 19 1 1 C U 20 1_555 C U 6 2_555 -2.279 -1.867 0.253 1.774 -13.260 4.528 35 C_U20:U6_C C 20 ? C 6 ? 16 1 1 C C 21 1_555 C G 5 2_555 0.129 -0.162 0.182 -0.966 -22.476 2.854 36 C_C21:G5_C C 21 ? C 5 ? 19 1 1 C G 22 1_555 C C 4 2_555 -0.064 -0.056 -0.014 -5.747 -7.335 0.319 37 C_G22:C4_C C 22 ? C 4 ? 19 1 1 C C 23 1_555 C G 3 2_555 0.019 -0.196 0.166 4.354 -7.288 -1.354 38 C_C23:G3_C C 23 ? C 3 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 3 1_555 B C 23 1_555 A C 4 1_555 B G 22 1_555 -0.118 -1.341 3.213 0.282 3.342 32.751 -2.915 0.254 3.064 5.908 -0.498 32.917 1 AA_G3C4:G45C46_BB A 3 ? B 46 ? A 4 ? B 45 ? 1 A C 4 1_555 B G 22 1_555 A G 5 1_555 B C 21 1_555 0.631 -1.832 3.392 1.343 11.623 27.787 -5.747 -0.958 2.471 22.955 -2.653 30.105 2 AA_C4G5:C44G45_BB A 4 ? B 45 ? A 5 ? B 44 ? 1 A G 5 1_555 B C 21 1_555 A U 6 1_555 B U 20 1_555 -0.235 -1.754 2.906 -4.001 6.458 24.638 -5.428 -0.399 2.384 14.695 9.104 25.766 3 AA_G5U6:U43C44_BB A 5 ? B 44 ? A 6 ? B 43 ? 1 A U 6 1_555 B U 20 1_555 A C 7 1_555 B G 19 1_555 -0.005 -1.298 3.525 -1.647 7.944 44.984 -2.399 -0.144 3.261 10.283 2.132 45.672 4 AA_U6C7:G42U43_BB A 6 ? B 43 ? A 7 ? B 42 ? 1 A C 9 1_555 B G 16 1_555 A G 10 1_555 B C 15 1_555 -0.261 -1.931 3.313 -4.129 12.315 30.560 -5.269 -0.174 2.392 22.150 7.426 33.146 5 AA_C9G10:C38G39_BB A 9 ? B 39 ? A 10 ? B 38 ? 1 A G 10 1_555 B C 15 1_555 A U 11 1_555 B A 14 1_555 -0.500 -1.351 3.175 -1.473 5.463 34.142 -3.066 0.627 2.948 9.226 2.488 34.594 6 AA_G10U11:A37C38_BB A 10 ? B 38 ? A 11 ? B 37 ? 1 A U 11 1_555 B A 14 1_555 A C 12 1_555 B G 13 1_555 0.171 -1.192 3.228 -1.371 3.977 35.146 -2.527 -0.476 3.070 6.557 2.261 35.389 7 AA_U11C12:G36A37_BB A 11 ? B 37 ? A 12 ? B 36 ? 1 A C 12 1_555 B G 13 1_555 A G 13 1_555 B C 12 1_555 -0.214 -1.414 3.140 1.761 12.250 30.405 -4.360 0.646 2.392 22.234 -3.196 32.772 8 AA_C12G13:C35G36_BB A 12 ? B 36 ? A 13 ? B 35 ? 1 A G 13 1_555 B C 12 1_555 A A 14 1_555 B U 11 1_555 -0.034 -1.092 3.033 -2.327 5.146 32.930 -2.670 -0.288 2.830 8.995 4.068 33.398 9 AA_G13A14:U34C35_BB A 13 ? B 35 ? A 14 ? B 34 ? 1 A A 14 1_555 B U 11 1_555 A C 15 1_555 B G 10 1_555 0.466 -1.133 3.197 3.360 10.060 34.973 -3.114 -0.308 2.807 16.282 -5.439 36.498 10 AA_A14C15:G33U34_BB A 14 ? B 34 ? A 15 ? B 33 ? 1 A C 15 1_555 B G 10 1_555 A G 16 1_555 B C 9 1_555 -0.288 -1.561 3.282 2.433 19.370 29.283 -5.112 0.794 1.891 33.971 -4.268 35.075 11 AA_C15G16:C32G33_BB A 15 ? B 33 ? A 16 ? B 32 ? 1 A G 16 1_555 B C 9 1_555 A G 19 1_555 B C 7 1_555 -1.672 -1.779 6.138 0.389 22.447 76.475 -2.508 1.330 5.526 17.776 -0.308 79.216 12 AA_G16G19:C30C32_BB A 16 ? B 32 ? A 19 ? B 30 ? 1 A A 17 1_555 C U 2 1_555 A A 18 1_555 C U 1 1_555 0.717 -2.396 4.106 8.542 7.724 34.454 -5.154 0.292 3.576 12.611 -13.947 36.273 13 AA_A17A18:U1U2_CC A 17 ? C 2 ? A 18 ? C 1 ? 1 A U 20 1_555 B U 6 1_555 A C 21 1_555 B G 5 1_555 -0.519 -1.485 2.928 2.033 -0.218 40.794 -2.106 0.943 2.908 -0.313 -2.915 40.843 14 AA_U20C21:G28U29_BB A 20 ? B 29 ? A 21 ? B 28 ? 1 A C 21 1_555 B G 5 1_555 A G 22 1_555 B C 4 1_555 -0.017 -2.024 3.403 3.419 12.889 27.323 -6.220 0.657 2.225 25.451 -6.751 30.347 15 AA_C21G22:C27G28_BB A 21 ? B 28 ? A 22 ? B 27 ? 1 A G 22 1_555 B C 4 1_555 A C 23 1_555 B G 3 1_555 -0.129 -1.802 3.042 -0.658 1.538 32.984 -3.408 0.124 2.959 2.707 1.159 33.025 16 AA_G22C23:G26C27_BB A 22 ? B 27 ? A 23 ? B 26 ? 1 C G 3 1_555 C C 23 2_555 C C 4 1_555 C G 22 2_555 0.058 -0.901 3.119 1.420 6.535 30.928 -2.774 0.136 2.873 12.078 -2.624 31.626 17 CC_G3C4:G22C23_CC C 3 ? C 23 ? C 4 ? C 22 ? 1 C C 4 1_555 C G 22 2_555 C G 5 1_555 C C 21 2_555 0.784 -1.632 3.267 -0.604 10.979 29.256 -4.932 -1.563 2.491 20.832 1.146 31.212 18 CC_C4G5:C21G22_CC C 4 ? C 22 ? C 5 ? C 21 ? 1 C G 5 1_555 C C 21 2_555 C U 6 1_555 C U 20 2_555 0.382 -1.375 3.324 -0.002 2.086 44.693 -1.997 -0.502 3.260 2.741 0.003 44.739 19 CC_G5U6:U20C21_CC C 5 ? C 21 ? C 6 ? C 20 ? 1 C U 6 1_555 C U 20 2_555 C C 7 1_555 C G 19 2_555 -0.230 -2.444 3.157 6.299 1.950 28.210 -5.291 1.761 2.867 3.932 -12.705 28.955 20 CC_U6C7:G19U20_CC C 6 ? C 20 ? C 7 ? C 19 ? 1 C C 7 1_555 C G 19 2_555 C C 9 1_555 C G 16 2_555 0.629 -3.337 6.234 -0.409 14.120 64.075 -4.139 -0.612 5.471 13.141 0.381 65.451 21 CC_C7C9:G16G19_CC C 7 ? C 19 ? C 9 ? C 16 ? 1 C C 9 1_555 C G 16 2_555 C G 10 1_555 C C 15 2_555 0.021 -1.845 3.164 -2.710 21.137 29.369 -5.353 -0.339 1.529 36.286 4.652 36.147 22 CC_C9G10:C15G16_CC C 9 ? C 16 ? C 10 ? C 15 ? 1 C G 10 1_555 C C 15 2_555 C U 11 1_555 C A 14 2_555 -0.738 -1.672 3.178 -1.987 5.834 29.530 -4.321 1.042 2.845 11.291 3.846 30.152 23 CC_G10U11:A14C15_CC C 10 ? C 15 ? C 11 ? C 14 ? 1 C U 11 1_555 C A 14 2_555 C C 12 1_555 C G 13 2_555 -0.155 -1.397 3.207 1.565 8.210 32.193 -3.718 0.514 2.766 14.502 -2.764 33.232 24 CC_U11C12:G13A14_CC C 11 ? C 14 ? C 12 ? C 13 ? 1 C C 12 1_555 C G 13 2_555 C G 13 1_555 C C 12 2_555 0.000 -1.747 3.183 0.000 9.676 26.069 -5.688 0.000 2.393 20.570 0.000 27.778 25 CC_C12G13:C12G13_CC C 12 ? C 13 ? C 13 ? C 12 ? 1 C G 13 1_555 C C 12 2_555 C A 14 1_555 C U 11 2_555 0.155 -1.397 3.207 -1.565 8.210 32.193 -3.718 -0.514 2.766 14.503 2.764 33.232 26 CC_G13A14:U11C12_CC C 13 ? C 12 ? C 14 ? C 11 ? 1 C A 14 1_555 C U 11 2_555 C C 15 1_555 C G 10 2_555 0.738 -1.672 3.178 1.987 5.834 29.530 -4.321 -1.042 2.845 11.291 -3.846 30.152 27 CC_A14C15:G10U11_CC C 14 ? C 11 ? C 15 ? C 10 ? 1 C C 15 1_555 C G 10 2_555 C G 16 1_555 C C 9 2_555 -0.021 -1.845 3.164 2.710 21.137 29.369 -5.353 0.339 1.529 36.286 -4.652 36.147 28 CC_C15G16:C9G10_CC C 15 ? C 10 ? C 16 ? C 9 ? 1 C G 16 1_555 C C 9 2_555 C G 19 1_555 C C 7 2_555 -0.629 -3.337 6.234 0.409 14.120 64.075 -4.139 0.612 5.471 13.141 -0.381 65.451 29 CC_G16G19:C7C9_CC C 16 ? C 9 ? C 19 ? C 7 ? 1 C G 19 1_555 C C 7 2_555 C U 20 1_555 C U 6 2_555 0.230 -2.444 3.157 -6.299 1.949 28.210 -5.291 -1.761 2.867 3.932 12.705 28.955 30 CC_G19U20:U6C7_CC C 19 ? C 7 ? C 20 ? C 6 ? 1 C U 20 1_555 C U 6 2_555 C C 21 1_555 C G 5 2_555 -0.382 -1.375 3.324 0.002 2.086 44.693 -1.997 0.502 3.260 2.741 -0.003 44.739 31 CC_U20C21:G5U6_CC C 20 ? C 6 ? C 21 ? C 5 ? 1 C C 21 1_555 C G 5 2_555 C G 22 1_555 C C 4 2_555 -0.784 -1.632 3.267 0.604 10.979 29.256 -4.932 1.563 2.491 20.832 -1.146 31.212 32 CC_C21G22:C4G5_CC C 21 ? C 5 ? C 22 ? C 4 ? 1 C G 22 1_555 C C 4 2_555 C C 23 1_555 C G 3 2_555 -0.058 -0.901 3.119 -1.420 6.535 30.928 -2.774 -0.136 2.873 12.078 2.624 31.626 33 CC_G22C23:G3C4_CC C 22 ? C 4 ? C 23 ? C 3 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #