HEADER OXIDOREDUCTASE 05-SEP-14 4WCT TITLE THE CRYSTAL STRUCTURE OF FRUCTOSYL AMINE: OXYGEN OXIDOREDUCTASE TITLE 2 (AMADORIASE I) FROM ASPERGILLUS FUMIGATUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOSYL AMINE:OXYGEN OXIDOREDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AMADORIASE 1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEOSARTORYA FUMIGATA; SOURCE 3 ORGANISM_TAXID: 746128; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS FAOX, FAODS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR F.RIGOLDI,A.GAUTIERI,A.DALLE VEDOVE,A.P.LUCARELLI,S.VESENTINI, AUTHOR 2 E.PARISINI REVDAT 4 10-JAN-24 4WCT 1 REMARK REVDAT 3 25-MAY-16 4WCT 1 JRNL REVDAT 2 24-FEB-16 4WCT 1 JRNL REVDAT 1 17-FEB-16 4WCT 0 JRNL AUTH F.RIGOLDI,A.GAUTIERI,A.DALLE VEDOVE,A.P.LUCARELLI, JRNL AUTH 2 S.VESENTINI,E.PARISINI JRNL TITL CRYSTAL STRUCTURE OF THE DEGLYCATING ENZYME AMADORIASE I IN JRNL TITL 2 ITS FREE FORM AND SUBSTRATE-BOUND COMPLEX. JRNL REF PROTEINS V. 84 744 2016 JRNL REFN ESSN 1097-0134 JRNL PMID 26873906 JRNL DOI 10.1002/PROT.25015 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 113833 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5993 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7815 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 411 REMARK 3 BIN FREE R VALUE : 0.2310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6902 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 1172 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.58000 REMARK 3 B22 (A**2) : -0.19000 REMARK 3 B33 (A**2) : -0.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.076 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.553 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7330 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6816 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9995 ; 1.345 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15769 ; 0.684 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 916 ; 7.023 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 338 ;34.686 ;23.550 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1185 ;12.659 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;14.997 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1053 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8310 ; 0.019 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1694 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3574 ; 1.986 ; 1.343 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3573 ; 1.981 ; 1.342 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4478 ; 2.701 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4479 ; 2.702 ; 2.002 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3756 ; 3.564 ; 1.678 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3757 ; 3.564 ; 1.677 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5504 ; 5.215 ; 2.367 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9715 ; 7.476 ;13.365 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8899 ; 7.021 ;11.983 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4WCT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203540. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 119826 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 48.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.47300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3DJD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE 0.1M, 10% PEG 4000, 15% REMARK 280 2-PROPANOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.19800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.40750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.40750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.19800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 HIS A -6 REMARK 465 ILE A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 ASP A -1 REMARK 465 LYS A 0 REMARK 465 MET A 1 REMARK 465 ARG A 443 REMARK 465 GLY A 444 REMARK 465 PRO A 445 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 HIS B -6 REMARK 465 ILE B -5 REMARK 465 ASP B -4 REMARK 465 ASP B -3 REMARK 465 ASP B -2 REMARK 465 ASP B -1 REMARK 465 LYS B 0 REMARK 465 MET B 1 REMARK 465 ARG B 443 REMARK 465 GLY B 444 REMARK 465 PRO B 445 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1077 O HOH A 1167 1.51 REMARK 500 O HOH A 675 O HOH A 888 1.72 REMARK 500 O HOH B 1051 O HOH B 1109 1.78 REMARK 500 O HOH A 1092 O HOH A 1116 1.89 REMARK 500 O HOH B 1130 O HOH B 1131 1.90 REMARK 500 O HOH B 702 O HOH B 734 1.90 REMARK 500 O HOH A 1148 O HOH A 1162 1.93 REMARK 500 O HOH B 704 O HOH B 714 1.93 REMARK 500 O HOH A 1106 O HOH B 1046 1.94 REMARK 500 NZ LYS A 177 O HOH A 910 1.95 REMARK 500 O HOH A 706 O HOH A 710 1.97 REMARK 500 O HOH A 709 O HOH A 1079 1.99 REMARK 500 O HOH B 629 O HOH B 682 2.01 REMARK 500 O HOH B 623 O HOH B 691 2.03 REMARK 500 O HOH A 907 O HOH A 1167 2.03 REMARK 500 O HOH A 1185 O HOH A 1188 2.07 REMARK 500 O HOH B 633 O HOH B 685 2.09 REMARK 500 CG GLU B 395 O HOH B 1033 2.11 REMARK 500 O HOH A 696 O HOH A 835 2.12 REMARK 500 O HOH A 1179 O HOH A 1180 2.12 REMARK 500 OD1 ASP A 112 O HOH A 908 2.13 REMARK 500 NH1 ARG A 356 O HOH A 800 2.14 REMARK 500 O HOH A 699 O HOH A 715 2.14 REMARK 500 SG CYS B 342 C8M FAD B 500 2.15 REMARK 500 ND2 ASN A 372 O HOH A 967 2.16 REMARK 500 NZ LYS A 233 O HOH A 1061 2.16 REMARK 500 O HOH A 1058 O HOH A 1096 2.17 REMARK 500 O HOH A 1106 O HOH B 1051 2.18 REMARK 500 NZ LYS A 177 O HOH A 1111 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 676 O HOH B 674 2465 1.85 REMARK 500 O HOH A 640 O HOH B 661 2465 2.03 REMARK 500 O HOH A 701 O HOH B 712 2465 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 4 151.69 -48.28 REMARK 500 ALA A 17 49.51 -100.13 REMARK 500 THR A 88 -44.71 -132.73 REMARK 500 THR A 88 -37.93 -136.26 REMARK 500 LYS A 267 -50.41 -133.67 REMARK 500 HIS A 310 46.21 -91.05 REMARK 500 ASN A 372 36.03 -143.68 REMARK 500 ARG A 403 52.96 -150.91 REMARK 500 ALA B 17 50.71 -103.56 REMARK 500 TYR B 256 55.18 -92.32 REMARK 500 LYS B 267 -48.22 -133.06 REMARK 500 HIS B 310 52.38 -95.47 REMARK 500 LYS B 391 28.50 -141.17 REMARK 500 ARG B 403 52.27 -148.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 500 DBREF 4WCT A 1 445 UNP O42629 O42629_ASPFM 1 445 DBREF 4WCT B 1 445 UNP O42629 O42629_ASPFM 1 445 SEQADV 4WCT HIS A -15 UNP O42629 EXPRESSION TAG SEQADV 4WCT HIS A -14 UNP O42629 EXPRESSION TAG SEQADV 4WCT HIS A -13 UNP O42629 EXPRESSION TAG SEQADV 4WCT HIS A -12 UNP O42629 EXPRESSION TAG SEQADV 4WCT HIS A -11 UNP O42629 EXPRESSION TAG SEQADV 4WCT HIS A -10 UNP O42629 EXPRESSION TAG SEQADV 4WCT SER A -9 UNP O42629 EXPRESSION TAG SEQADV 4WCT SER A -8 UNP O42629 EXPRESSION TAG SEQADV 4WCT GLY A -7 UNP O42629 EXPRESSION TAG SEQADV 4WCT HIS A -6 UNP O42629 EXPRESSION TAG SEQADV 4WCT ILE A -5 UNP O42629 EXPRESSION TAG SEQADV 4WCT ASP A -4 UNP O42629 EXPRESSION TAG SEQADV 4WCT ASP A -3 UNP O42629 EXPRESSION TAG SEQADV 4WCT ASP A -2 UNP O42629 EXPRESSION TAG SEQADV 4WCT ASP A -1 UNP O42629 EXPRESSION TAG SEQADV 4WCT LYS A 0 UNP O42629 EXPRESSION TAG SEQADV 4WCT HIS B -15 UNP O42629 EXPRESSION TAG SEQADV 4WCT HIS B -14 UNP O42629 EXPRESSION TAG SEQADV 4WCT HIS B -13 UNP O42629 EXPRESSION TAG SEQADV 4WCT HIS B -12 UNP O42629 EXPRESSION TAG SEQADV 4WCT HIS B -11 UNP O42629 EXPRESSION TAG SEQADV 4WCT HIS B -10 UNP O42629 EXPRESSION TAG SEQADV 4WCT SER B -9 UNP O42629 EXPRESSION TAG SEQADV 4WCT SER B -8 UNP O42629 EXPRESSION TAG SEQADV 4WCT GLY B -7 UNP O42629 EXPRESSION TAG SEQADV 4WCT HIS B -6 UNP O42629 EXPRESSION TAG SEQADV 4WCT ILE B -5 UNP O42629 EXPRESSION TAG SEQADV 4WCT ASP B -4 UNP O42629 EXPRESSION TAG SEQADV 4WCT ASP B -3 UNP O42629 EXPRESSION TAG SEQADV 4WCT ASP B -2 UNP O42629 EXPRESSION TAG SEQADV 4WCT ASP B -1 UNP O42629 EXPRESSION TAG SEQADV 4WCT LYS B 0 UNP O42629 EXPRESSION TAG SEQRES 1 A 461 HIS HIS HIS HIS HIS HIS SER SER GLY HIS ILE ASP ASP SEQRES 2 A 461 ASP ASP LYS MET ALA PRO SER ILE LEU SER THR GLU SER SEQRES 3 A 461 SER ILE ILE VAL ILE GLY ALA GLY THR TRP GLY CYS SER SEQRES 4 A 461 THR ALA LEU HIS LEU ALA ARG ARG GLY TYR LYS ASP VAL SEQRES 5 A 461 THR VAL LEU ASP PRO HIS PRO VAL PRO SER PRO ILE ALA SEQRES 6 A 461 ALA GLY ASN ASP ILE ASN LYS ILE MET GLU HIS SER GLU SEQRES 7 A 461 LEU LYS ASP GLY SER SER ASP PRO ARG SER ALA ALA PHE SEQRES 8 A 461 SER THR PHE THR ARG ALA ALA LEU LYS ALA TRP LYS THR SEQRES 9 A 461 ASP PRO VAL PHE GLN PRO TYR PHE HIS GLU THR GLY PHE SEQRES 10 A 461 ILE ILE SER GLY HIS THR PRO ALA LEU ILE ASP HIS ILE SEQRES 11 A 461 ARG LYS ASP GLU VAL GLU PRO SER GLU THR ASN PHE VAL SEQRES 12 A 461 LYS LEU GLU THR ALA GLU ASP PHE ARG ARG THR MET PRO SEQRES 13 A 461 PRO GLY VAL LEU THR GLY ASP PHE PRO GLY TRP LYS GLY SEQRES 14 A 461 TRP LEU HIS LYS SER GLY ALA GLY TRP ILE HIS ALA LYS SEQRES 15 A 461 LYS ALA MET ILE SER ALA PHE ASN GLU ALA LYS ARG LEU SEQRES 16 A 461 GLY VAL ARG PHE VAL THR GLY SER PRO GLU GLY ASN VAL SEQRES 17 A 461 VAL SER LEU VAL TYR GLU ASP GLY ASP VAL VAL GLY ALA SEQRES 18 A 461 ARG THR ALA ASP GLY ARG VAL HIS LYS ALA HIS ARG THR SEQRES 19 A 461 ILE LEU SER ALA GLY ALA GLY SER ASP SER LEU LEU ASP SEQRES 20 A 461 PHE LYS LYS GLN LEU ARG PRO THR ALA TRP THR LEU CYS SEQRES 21 A 461 HIS ILE GLN MET GLY PRO GLU GLU VAL LYS GLN TYR ARG SEQRES 22 A 461 ASN LEU PRO VAL LEU PHE ASN ILE ALA LYS GLY PHE PHE SEQRES 23 A 461 MET GLU PRO ASP GLU ASP LYS HIS GLU LEU LYS ILE CYS SEQRES 24 A 461 ASP GLU HIS PRO GLY TYR CYS ASN PHE LEU PRO ASP PRO SEQRES 25 A 461 ASN ARG PRO GLY GLN GLU LYS SER VAL PRO PHE ALA LYS SEQRES 26 A 461 HIS GLN ILE PRO LEU GLU ALA GLU ALA ARG ALA ARG ASP SEQRES 27 A 461 PHE LEU HIS ASP THR MET PRO HIS LEU ALA ASP ARG PRO SEQRES 28 A 461 LEU SER PHE ALA ARG ILE CYS TRP ASP ALA ASP THR PRO SEQRES 29 A 461 ASP ARG ALA PHE LEU ILE ASP ARG HIS PRO GLU HIS PRO SEQRES 30 A 461 SER LEU LEU VAL ALA VAL GLY GLY SER GLY ASN GLY ALA SEQRES 31 A 461 MET GLN MET PRO THR ILE GLY GLY PHE ILE ALA ASP ALA SEQRES 32 A 461 LEU GLU SER LYS LEU GLN LYS GLU VAL LYS ASP ILE VAL SEQRES 33 A 461 ARG TRP ARG PRO GLU THR ALA VAL ASP ARG ASP TRP ARG SEQRES 34 A 461 ALA THR GLN ASN ARG PHE GLY GLY PRO ASP ARG ILE MET SEQRES 35 A 461 ASP PHE GLN GLN VAL GLY GLU ASP GLN TRP THR LYS ILE SEQRES 36 A 461 GLY GLU SER ARG GLY PRO SEQRES 1 B 461 HIS HIS HIS HIS HIS HIS SER SER GLY HIS ILE ASP ASP SEQRES 2 B 461 ASP ASP LYS MET ALA PRO SER ILE LEU SER THR GLU SER SEQRES 3 B 461 SER ILE ILE VAL ILE GLY ALA GLY THR TRP GLY CYS SER SEQRES 4 B 461 THR ALA LEU HIS LEU ALA ARG ARG GLY TYR LYS ASP VAL SEQRES 5 B 461 THR VAL LEU ASP PRO HIS PRO VAL PRO SER PRO ILE ALA SEQRES 6 B 461 ALA GLY ASN ASP ILE ASN LYS ILE MET GLU HIS SER GLU SEQRES 7 B 461 LEU LYS ASP GLY SER SER ASP PRO ARG SER ALA ALA PHE SEQRES 8 B 461 SER THR PHE THR ARG ALA ALA LEU LYS ALA TRP LYS THR SEQRES 9 B 461 ASP PRO VAL PHE GLN PRO TYR PHE HIS GLU THR GLY PHE SEQRES 10 B 461 ILE ILE SER GLY HIS THR PRO ALA LEU ILE ASP HIS ILE SEQRES 11 B 461 ARG LYS ASP GLU VAL GLU PRO SER GLU THR ASN PHE VAL SEQRES 12 B 461 LYS LEU GLU THR ALA GLU ASP PHE ARG ARG THR MET PRO SEQRES 13 B 461 PRO GLY VAL LEU THR GLY ASP PHE PRO GLY TRP LYS GLY SEQRES 14 B 461 TRP LEU HIS LYS SER GLY ALA GLY TRP ILE HIS ALA LYS SEQRES 15 B 461 LYS ALA MET ILE SER ALA PHE ASN GLU ALA LYS ARG LEU SEQRES 16 B 461 GLY VAL ARG PHE VAL THR GLY SER PRO GLU GLY ASN VAL SEQRES 17 B 461 VAL SER LEU VAL TYR GLU ASP GLY ASP VAL VAL GLY ALA SEQRES 18 B 461 ARG THR ALA ASP GLY ARG VAL HIS LYS ALA HIS ARG THR SEQRES 19 B 461 ILE LEU SER ALA GLY ALA GLY SER ASP SER LEU LEU ASP SEQRES 20 B 461 PHE LYS LYS GLN LEU ARG PRO THR ALA TRP THR LEU CYS SEQRES 21 B 461 HIS ILE GLN MET GLY PRO GLU GLU VAL LYS GLN TYR ARG SEQRES 22 B 461 ASN LEU PRO VAL LEU PHE ASN ILE ALA LYS GLY PHE PHE SEQRES 23 B 461 MET GLU PRO ASP GLU ASP LYS HIS GLU LEU LYS ILE CYS SEQRES 24 B 461 ASP GLU HIS PRO GLY TYR CYS ASN PHE LEU PRO ASP PRO SEQRES 25 B 461 ASN ARG PRO GLY GLN GLU LYS SER VAL PRO PHE ALA LYS SEQRES 26 B 461 HIS GLN ILE PRO LEU GLU ALA GLU ALA ARG ALA ARG ASP SEQRES 27 B 461 PHE LEU HIS ASP THR MET PRO HIS LEU ALA ASP ARG PRO SEQRES 28 B 461 LEU SER PHE ALA ARG ILE CYS TRP ASP ALA ASP THR PRO SEQRES 29 B 461 ASP ARG ALA PHE LEU ILE ASP ARG HIS PRO GLU HIS PRO SEQRES 30 B 461 SER LEU LEU VAL ALA VAL GLY GLY SER GLY ASN GLY ALA SEQRES 31 B 461 MET GLN MET PRO THR ILE GLY GLY PHE ILE ALA ASP ALA SEQRES 32 B 461 LEU GLU SER LYS LEU GLN LYS GLU VAL LYS ASP ILE VAL SEQRES 33 B 461 ARG TRP ARG PRO GLU THR ALA VAL ASP ARG ASP TRP ARG SEQRES 34 B 461 ALA THR GLN ASN ARG PHE GLY GLY PRO ASP ARG ILE MET SEQRES 35 B 461 ASP PHE GLN GLN VAL GLY GLU ASP GLN TRP THR LYS ILE SEQRES 36 B 461 GLY GLU SER ARG GLY PRO HET FAD A 500 53 HET FAD B 500 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 HOH *1172(H2 O) HELIX 1 AA1 GLY A 18 ARG A 31 1 14 HELIX 2 AA2 ASP A 69 LYS A 87 1 19 HELIX 3 AA3 PHE A 92 PRO A 94 5 3 HELIX 4 AA4 THR A 107 GLU A 118 1 12 HELIX 5 AA5 THR A 131 ARG A 137 1 7 HELIX 6 AA6 HIS A 164 LEU A 179 1 16 HELIX 7 AA7 ALA A 222 LEU A 229 5 8 HELIX 8 AA8 GLU A 251 TYR A 256 5 6 HELIX 9 AA9 PRO A 313 MET A 328 1 16 HELIX 10 AB1 PRO A 329 ALA A 332 5 4 HELIX 11 AB2 GLN A 376 GLU A 389 1 14 HELIX 12 AB3 GLN A 393 ASP A 398 1 6 HELIX 13 AB4 ARG A 403 VAL A 408 5 6 HELIX 14 AB5 GLN A 429 VAL A 431 5 3 HELIX 15 AB6 GLY B 18 ARG B 31 1 14 HELIX 16 AB7 LYS B 64 SER B 68 5 5 HELIX 17 AB8 ASP B 69 ASP B 89 1 21 HELIX 18 AB9 PHE B 92 PRO B 94 5 3 HELIX 19 AC1 THR B 107 GLU B 118 1 12 HELIX 20 AC2 THR B 131 ARG B 137 1 7 HELIX 21 AC3 HIS B 164 LEU B 179 1 16 HELIX 22 AC4 ALA B 222 LEU B 229 5 8 HELIX 23 AC5 GLU B 251 TYR B 256 5 6 HELIX 24 AC6 PRO B 313 MET B 328 1 16 HELIX 25 AC7 PRO B 329 ALA B 332 5 4 HELIX 26 AC8 THR B 379 GLU B 389 1 11 HELIX 27 AC9 GLN B 393 ARG B 401 1 9 HELIX 28 AD1 ARG B 403 VAL B 408 5 6 HELIX 29 AD2 GLN B 429 VAL B 431 5 3 SHEET 1 AA1 6 ARG A 182 THR A 185 0 SHEET 2 AA1 6 VAL A 36 ASP A 40 1 N VAL A 38 O VAL A 184 SHEET 3 AA1 6 ILE A 12 ILE A 15 1 N VAL A 14 O LEU A 39 SHEET 4 AA1 6 ARG A 217 LEU A 220 1 O ILE A 219 N ILE A 15 SHEET 5 AA1 6 LEU A 363 VAL A 367 1 O LEU A 364 N LEU A 220 SHEET 6 AA1 6 LEU A 353 ARG A 356 -1 N ASP A 355 O VAL A 365 SHEET 1 AA2 3 LYS A 56 GLU A 59 0 SHEET 2 AA2 3 ALA A 160 ILE A 163 -1 O ILE A 163 N LYS A 56 SHEET 3 AA2 3 PHE A 96 HIS A 97 -1 N HIS A 97 O TRP A 162 SHEET 1 AA3 8 VAL A 127 LEU A 129 0 SHEET 2 AA3 8 LYS A 152 HIS A 156 -1 O GLY A 153 N LEU A 129 SHEET 3 AA3 8 PHE A 101 GLY A 105 -1 N PHE A 101 O HIS A 156 SHEET 4 AA3 8 VAL A 261 ASN A 264 1 O VAL A 261 N ILE A 102 SHEET 5 AA3 8 GLY A 268 MET A 271 -1 O GLY A 268 N ASN A 264 SHEET 6 AA3 8 GLU A 279 ASP A 284 -1 O CYS A 283 N PHE A 269 SHEET 7 AA3 8 ARG A 237 GLN A 247 -1 N ILE A 246 O LEU A 280 SHEET 8 AA3 8 PHE A 338 ASP A 346 -1 O ASP A 344 N THR A 239 SHEET 1 AA4 3 VAL A 192 GLU A 198 0 SHEET 2 AA4 3 ASP A 201 THR A 207 -1 O ARG A 206 N SER A 194 SHEET 3 AA4 3 VAL A 212 LYS A 214 -1 O HIS A 213 N ALA A 205 SHEET 1 AA5 2 TYR A 289 CYS A 290 0 SHEET 2 AA5 2 MET A 426 ASP A 427 1 O MET A 426 N CYS A 290 SHEET 1 AA6 2 PHE A 292 PRO A 294 0 SHEET 2 AA6 2 GLU A 302 SER A 304 -1 O LYS A 303 N LEU A 293 SHEET 1 AA7 6 ARG B 182 THR B 185 0 SHEET 2 AA7 6 VAL B 36 ASP B 40 1 N VAL B 38 O VAL B 184 SHEET 3 AA7 6 ILE B 12 ILE B 15 1 N VAL B 14 O LEU B 39 SHEET 4 AA7 6 ARG B 217 LEU B 220 1 O ILE B 219 N ILE B 15 SHEET 5 AA7 6 LEU B 363 VAL B 367 1 O LEU B 364 N THR B 218 SHEET 6 AA7 6 LEU B 353 ARG B 356 -1 N ASP B 355 O VAL B 365 SHEET 1 AA8 3 LYS B 56 GLU B 59 0 SHEET 2 AA8 3 ALA B 160 ILE B 163 -1 O GLY B 161 N MET B 58 SHEET 3 AA8 3 PHE B 96 HIS B 97 -1 N HIS B 97 O TRP B 162 SHEET 1 AA9 8 VAL B 127 LEU B 129 0 SHEET 2 AA9 8 LYS B 152 HIS B 156 -1 O GLY B 153 N LEU B 129 SHEET 3 AA9 8 PHE B 101 GLY B 105 -1 N PHE B 101 O HIS B 156 SHEET 4 AA9 8 VAL B 261 ASN B 264 1 O VAL B 261 N ILE B 102 SHEET 5 AA9 8 GLY B 268 MET B 271 -1 O GLY B 268 N ASN B 264 SHEET 6 AA9 8 GLU B 279 ASP B 284 -1 O CYS B 283 N PHE B 269 SHEET 7 AA9 8 ARG B 237 GLN B 247 -1 N CYS B 244 O ILE B 282 SHEET 8 AA9 8 PHE B 338 ASP B 346 -1 O ASP B 344 N THR B 239 SHEET 1 AB1 3 VAL B 192 GLU B 198 0 SHEET 2 AB1 3 ASP B 201 THR B 207 -1 O VAL B 203 N VAL B 196 SHEET 3 AB1 3 VAL B 212 LYS B 214 -1 O HIS B 213 N ALA B 205 SHEET 1 AB2 2 TYR B 289 CYS B 290 0 SHEET 2 AB2 2 MET B 426 ASP B 427 1 O MET B 426 N CYS B 290 SHEET 1 AB3 2 PHE B 292 PRO B 294 0 SHEET 2 AB3 2 GLU B 302 SER B 304 -1 O LYS B 303 N LEU B 293 CISPEP 1 VAL A 44 PRO A 45 0 0.70 CISPEP 2 SER A 187 PRO A 188 0 7.32 CISPEP 3 VAL B 44 PRO B 45 0 -2.72 CISPEP 4 SER B 187 PRO B 188 0 11.14 SITE 1 AC1 33 ILE A 15 GLY A 16 GLY A 18 THR A 19 SITE 2 AC1 33 TRP A 20 LEU A 39 ASP A 40 PRO A 41 SITE 3 AC1 33 SER A 46 ILE A 48 ALA A 49 ALA A 50 SITE 4 AC1 33 GLY A 51 LYS A 56 ILE A 57 ASN A 191 SITE 5 AC1 33 VAL A 192 ALA A 222 GLY A 223 CYS A 342 SITE 6 AC1 33 ASP A 344 GLY A 369 GLY A 371 ASN A 372 SITE 7 AC1 33 GLY A 373 ALA A 374 MET A 375 HOH A 624 SITE 8 AC1 33 HOH A 753 HOH A 754 HOH A 768 HOH A 780 SITE 9 AC1 33 HOH A 869 SITE 1 AC2 36 ILE B 15 GLY B 16 GLY B 18 THR B 19 SITE 2 AC2 36 TRP B 20 LEU B 39 ASP B 40 PRO B 41 SITE 3 AC2 36 HIS B 42 SER B 46 ILE B 48 ALA B 49 SITE 4 AC2 36 ALA B 50 GLY B 51 LYS B 56 ILE B 57 SITE 5 AC2 36 VAL B 192 ALA B 222 GLY B 223 TRP B 241 SITE 6 AC2 36 CYS B 342 ASP B 344 GLY B 369 GLY B 371 SITE 7 AC2 36 ASN B 372 GLY B 373 ALA B 374 MET B 375 SITE 8 AC2 36 HOH B 738 HOH B 739 HOH B 743 HOH B 747 SITE 9 AC2 36 HOH B 771 HOH B 802 HOH B 941 HOH B1066 CRYST1 70.396 83.100 176.815 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014205 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012034 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005656 0.00000