HEADER HYDROLASE 09-SEP-14 4WDQ TITLE CRYSTAL STRUCTURE OF HALOALKANE DEHALOGENASE LINB32 MUTANT (L177W) TITLE 2 FROM SPHINGOBIUM JAPONICUM UT26 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HALOALKANE DEHALOGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,3,4,6-TETRACHLORO-1,4-CYCLOHEXADIENE HYDROLASE,4-TCDN COMPND 5 CHLOROHYDROLASE; COMPND 6 EC: 3.8.1.5; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOBIUM JAPONICUM UT26S; SOURCE 3 ORGANISM_TAXID: 452662; SOURCE 4 GENE: LINB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, PROTEIN ENGINEERING EXPDTA X-RAY DIFFRACTION AUTHOR O.DEGTJARIK,P.REZACOVA,R.CHALOUPKOVA,J.DAMBORSKY,I.KUTA-SMATANOVA REVDAT 5 10-JAN-24 4WDQ 1 LINK REVDAT 4 17-JUL-19 4WDQ 1 REMARK REVDAT 3 06-SEP-17 4WDQ 1 REMARK LINK SITE ATOM REVDAT 2 05-OCT-16 4WDQ 1 JRNL REVDAT 1 23-DEC-15 4WDQ 0 JRNL AUTH O.DEGTJARIK,P.REZACOVA,R.CHALOUPKOVA,J.DAMBORSKY, JRNL AUTH 2 I.KUTA-SMATANOVA JRNL TITL CRYSTAL STRUCTURE OF HALOALKANE DEHALOGENASE LINB MUTANT JRNL TITL 2 (L177W) FROM SPHINGOBIUM JAPONICUM UT26 JRNL REF ACS CATALYSIS 2016 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.6B02081 REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0037 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 36137 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1802 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2404 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2353 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 714 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.097 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.780 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2483 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3389 ; 1.399 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 314 ; 5.993 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;35.300 ;23.023 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 394 ;11.899 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;18.692 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 349 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1987 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1196 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1658 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 586 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.016 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 41 ; 0.184 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 142 ; 0.178 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1550 ; 0.716 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2424 ; 1.005 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1076 ; 1.762 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 956 ; 2.686 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4WDQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203066. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8123 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36500 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.28500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 6.0 REMARK 200 STARTING MODEL: 1CV2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES; 0.2M MGCL2; 25% PEG3350, PH REMARK 280 5.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.36450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.52750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.24500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.52750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.36450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.24500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 521 O HOH A 601 2.10 REMARK 500 O HOH A 683 O HOH A 863 2.16 REMARK 500 O HOH A 548 O HOH A 881 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 39 45.04 -97.98 REMARK 500 ASP A 108 -133.69 55.36 REMARK 500 HIS A 121 50.39 -142.97 REMARK 500 GLN A 172 -54.12 -120.44 REMARK 500 ALA A 247 -64.82 -148.99 REMARK 500 ALA A 271 -96.80 -100.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1106 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A1107 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A1108 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A1109 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A1110 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A1111 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH A1112 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH A1113 DISTANCE = 7.26 ANGSTROMS REMARK 525 HOH A1114 DISTANCE = 7.37 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 456 O REMARK 620 2 HOH A 497 O 88.5 REMARK 620 3 HOH A 528 O 85.4 93.7 REMARK 620 4 HOH A 578 O 174.9 89.4 90.1 REMARK 620 5 HOH A 820 O 91.9 179.5 86.6 90.2 REMARK 620 6 HOH A 992 O 93.4 90.1 175.9 91.2 89.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 424 O REMARK 620 2 HOH A 523 O 86.4 REMARK 620 3 HOH A 536 O 91.8 95.4 REMARK 620 4 HOH A 806 O 173.9 89.0 92.7 REMARK 620 5 HOH A 828 O 90.4 89.8 174.5 85.6 REMARK 620 6 HOH A 944 O 87.8 173.1 88.6 96.5 86.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 438 O REMARK 620 2 HOH A 453 O 87.8 REMARK 620 3 HOH A 496 O 87.7 88.1 REMARK 620 4 HOH A 551 O 173.0 87.0 87.4 REMARK 620 5 HOH A 671 O 90.5 175.4 87.6 94.3 REMARK 620 6 HOH A 822 O 94.7 89.2 176.3 89.9 95.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 305 DBREF 4WDQ A 2 296 UNP P51698 LINB_SPHPI 2 296 SEQADV 4WDQ TRP A 177 UNP P51698 LEU 177 ENGINEERED MUTATION SEQADV 4WDQ HIS A 297 UNP P51698 EXPRESSION TAG SEQADV 4WDQ HIS A 298 UNP P51698 EXPRESSION TAG SEQRES 1 A 297 SER LEU GLY ALA LYS PRO PHE GLY GLU LYS LYS PHE ILE SEQRES 2 A 297 GLU ILE LYS GLY ARG ARG MET ALA TYR ILE ASP GLU GLY SEQRES 3 A 297 THR GLY ASP PRO ILE LEU PHE GLN HIS GLY ASN PRO THR SEQRES 4 A 297 SER SER TYR LEU TRP ARG ASN ILE MET PRO HIS CYS ALA SEQRES 5 A 297 GLY LEU GLY ARG LEU ILE ALA CYS ASP LEU ILE GLY MET SEQRES 6 A 297 GLY ASP SER ASP LYS LEU ASP PRO SER GLY PRO GLU ARG SEQRES 7 A 297 TYR ALA TYR ALA GLU HIS ARG ASP TYR LEU ASP ALA LEU SEQRES 8 A 297 TRP GLU ALA LEU ASP LEU GLY ASP ARG VAL VAL LEU VAL SEQRES 9 A 297 VAL HIS ASP TRP GLY SER ALA LEU GLY PHE ASP TRP ALA SEQRES 10 A 297 ARG ARG HIS ARG GLU ARG VAL GLN GLY ILE ALA TYR MET SEQRES 11 A 297 GLU ALA ILE ALA MET PRO ILE GLU TRP ALA ASP PHE PRO SEQRES 12 A 297 GLU GLN ASP ARG ASP LEU PHE GLN ALA PHE ARG SER GLN SEQRES 13 A 297 ALA GLY GLU GLU LEU VAL LEU GLN ASP ASN VAL PHE VAL SEQRES 14 A 297 GLU GLN VAL LEU PRO GLY TRP ILE LEU ARG PRO LEU SER SEQRES 15 A 297 GLU ALA GLU MET ALA ALA TYR ARG GLU PRO PHE LEU ALA SEQRES 16 A 297 ALA GLY GLU ALA ARG ARG PRO THR LEU SER TRP PRO ARG SEQRES 17 A 297 GLN ILE PRO ILE ALA GLY THR PRO ALA ASP VAL VAL ALA SEQRES 18 A 297 ILE ALA ARG ASP TYR ALA GLY TRP LEU SER GLU SER PRO SEQRES 19 A 297 ILE PRO LYS LEU PHE ILE ASN ALA GLU PRO GLY ALA LEU SEQRES 20 A 297 THR THR GLY ARG MET ARG ASP PHE CYS ARG THR TRP PRO SEQRES 21 A 297 ASN GLN THR GLU ILE THR VAL ALA GLY ALA HIS PHE ILE SEQRES 22 A 297 GLN GLU ASP SER PRO ASP GLU ILE GLY ALA ALA ILE ALA SEQRES 23 A 297 ALA PHE VAL ARG ARG LEU ARG PRO ALA HIS HIS HET MG A 301 1 HET MG A 302 1 HET MG A 303 1 HET CL A 304 1 HET CL A 305 1 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 2 MG 3(MG 2+) FORMUL 5 CL 2(CL 1-) FORMUL 7 HOH *714(H2 O) HELIX 1 AA1 SER A 41 ARG A 46 5 6 HELIX 2 AA2 ILE A 48 ALA A 53 5 6 HELIX 3 AA3 ALA A 81 LEU A 96 1 16 HELIX 4 AA4 ASP A 108 HIS A 121 1 14 HELIX 5 AA5 GLU A 139 PHE A 143 5 5 HELIX 6 AA6 PRO A 144 GLN A 146 5 3 HELIX 7 AA7 ASP A 147 SER A 156 1 10 HELIX 8 AA8 ALA A 158 GLN A 165 1 8 HELIX 9 AA9 ASN A 167 GLN A 172 1 6 HELIX 10 AB1 GLN A 172 TRP A 177 1 6 HELIX 11 AB2 SER A 183 GLU A 192 1 10 HELIX 12 AB3 PRO A 193 LEU A 195 5 3 HELIX 13 AB4 GLY A 198 ALA A 200 5 3 HELIX 14 AB5 ARG A 201 TRP A 207 1 7 HELIX 15 AB6 PRO A 208 ILE A 211 5 4 HELIX 16 AB7 PRO A 217 SER A 232 1 16 HELIX 17 AB8 THR A 250 ARG A 258 1 9 HELIX 18 AB9 PHE A 273 ASP A 277 5 5 HELIX 19 AC1 SER A 278 ARG A 294 1 17 SHEET 1 AA1 8 LYS A 12 ILE A 16 0 SHEET 2 AA1 8 ARG A 19 GLU A 26 -1 O ARG A 19 N ILE A 16 SHEET 3 AA1 8 ARG A 57 CYS A 61 -1 O LEU A 58 N GLU A 26 SHEET 4 AA1 8 PRO A 31 GLN A 35 1 N PHE A 34 O ILE A 59 SHEET 5 AA1 8 VAL A 102 HIS A 107 1 O VAL A 103 N LEU A 33 SHEET 6 AA1 8 VAL A 125 MET A 131 1 O ALA A 129 N LEU A 104 SHEET 7 AA1 8 LYS A 238 PRO A 245 1 O ILE A 241 N TYR A 130 SHEET 8 AA1 8 GLN A 263 GLY A 270 1 O THR A 264 N PHE A 240 LINK MG MG A 301 O HOH A 456 1555 1555 2.13 LINK MG MG A 301 O HOH A 497 1555 1555 2.08 LINK MG MG A 301 O HOH A 528 1555 1555 2.06 LINK MG MG A 301 O HOH A 578 1555 4445 2.11 LINK MG MG A 301 O HOH A 820 1555 1555 2.13 LINK MG MG A 301 O HOH A 992 1555 1555 2.13 LINK MG MG A 302 O HOH A 424 1555 1555 2.17 LINK MG MG A 302 O HOH A 523 1555 1555 2.07 LINK MG MG A 302 O HOH A 536 1555 1555 2.12 LINK MG MG A 302 O HOH A 806 1555 3444 2.14 LINK MG MG A 302 O HOH A 828 1555 3444 2.13 LINK MG MG A 302 O HOH A 944 1555 1555 2.05 LINK MG MG A 303 O HOH A 438 1555 1555 2.17 LINK MG MG A 303 O HOH A 453 1555 1655 2.06 LINK MG MG A 303 O HOH A 496 1555 1555 2.05 LINK MG MG A 303 O HOH A 551 1555 1555 2.04 LINK MG MG A 303 O HOH A 671 1555 1555 1.97 LINK MG MG A 303 O HOH A 822 1555 1555 2.12 CISPEP 1 ASN A 38 PRO A 39 0 -13.27 CISPEP 2 ASP A 73 PRO A 74 0 13.86 CISPEP 3 THR A 216 PRO A 217 0 -3.24 CISPEP 4 GLU A 244 PRO A 245 0 3.22 CISPEP 5 GLU A 244 PRO A 245 0 3.26 SITE 1 AC1 6 HOH A 456 HOH A 497 HOH A 528 HOH A 578 SITE 2 AC1 6 HOH A 820 HOH A 992 SITE 1 AC2 6 HOH A 523 HOH A 806 HOH A 828 HOH A 944 SITE 2 AC2 6 HOH A 536 HOH A 424 SITE 1 AC3 6 HOH A 438 HOH A 453 HOH A 496 HOH A 551 SITE 2 AC3 6 HOH A 671 HOH A 822 SITE 1 AC4 5 ASN A 38 TRP A 109 PHE A 169 TRP A 207 SITE 2 AC4 5 PRO A 208 SITE 1 AC5 4 THR A 216 ALA A 218 HOH A 607 HOH A 961 CRYST1 46.729 68.490 81.055 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021400 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014601 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012337 0.00000