HEADER VIRAL PROTEIN 09-SEP-14 4WE9 TITLE THE CRYSTAL STRUCTURE OF HEMAGGLUTININ FROM INFLUENZA VIRUS TITLE 2 A/VICTORIA/361/2011 IN COMPLEX WITH 3'SLN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 17-519; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 1268360; SOURCE 4 STRAIN: A/VICTORIA/361/2011(H3N2; SOURCE 5 GENE: HA; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS HEMAGGLUTININ, H3N2, INFLUENZA VIRUS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.YANG,P.J.CARNEY,J.C.CHANG,Z.GUO,J.M.VILLANUEVA,J.STEVENS REVDAT 4 27-DEC-23 4WE9 1 HETSYN REVDAT 3 29-JUL-20 4WE9 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 27-SEP-17 4WE9 1 COMPND SOURCE JRNL REMARK REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 11-FEB-15 4WE9 0 JRNL AUTH H.YANG,P.J.CARNEY,J.C.CHANG,Z.GUO,J.M.VILLANUEVA,J.STEVENS JRNL TITL STRUCTURE AND RECEPTOR BINDING PREFERENCES OF RECOMBINANT JRNL TITL 2 HUMAN A(H3N2) VIRUS HEMAGGLUTININS. JRNL REF VIROLOGY V.477C 18 2015 JRNL REFN ISSN 0042-6822 JRNL PMID 25617824 JRNL DOI 10.1016/J.VIROL.2014.12.024 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 38827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7117 - 5.2993 0.98 2753 154 0.2005 0.2365 REMARK 3 2 5.2993 - 4.2074 0.99 2695 136 0.1607 0.1890 REMARK 3 3 4.2074 - 3.6759 0.99 2674 142 0.1780 0.2094 REMARK 3 4 3.6759 - 3.3400 1.00 2642 140 0.1909 0.2181 REMARK 3 5 3.3400 - 3.1006 1.00 2652 136 0.2097 0.2577 REMARK 3 6 3.1006 - 2.9179 1.00 2627 148 0.2083 0.2447 REMARK 3 7 2.9179 - 2.7718 1.00 2653 124 0.2043 0.2519 REMARK 3 8 2.7718 - 2.6511 1.00 2617 135 0.2149 0.2276 REMARK 3 9 2.6511 - 2.5491 1.00 2643 130 0.2038 0.2325 REMARK 3 10 2.5491 - 2.4611 1.00 2599 148 0.2085 0.2116 REMARK 3 11 2.4611 - 2.3842 1.00 2625 159 0.2017 0.2173 REMARK 3 12 2.3842 - 2.3160 1.00 2601 133 0.2112 0.2403 REMARK 3 13 2.3160 - 2.2551 0.99 2568 149 0.2109 0.2750 REMARK 3 14 2.2551 - 2.2001 0.97 2524 120 0.2339 0.2593 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4102 REMARK 3 ANGLE : 0.838 5552 REMARK 3 CHIRALITY : 0.058 617 REMARK 3 PLANARITY : 0.003 717 REMARK 3 DIHEDRAL : 15.053 1506 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 322 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0057 40.2741 8.0784 REMARK 3 T TENSOR REMARK 3 T11: 0.5911 T22: 0.5438 REMARK 3 T33: 0.3541 T12: 0.0186 REMARK 3 T13: -0.1492 T23: 0.1080 REMARK 3 L TENSOR REMARK 3 L11: 0.5592 L22: 0.5611 REMARK 3 L33: 0.2128 L12: 0.0039 REMARK 3 L13: -0.2995 L23: -0.1055 REMARK 3 S TENSOR REMARK 3 S11: 0.1133 S12: -0.4732 S13: -0.2121 REMARK 3 S21: 0.3863 S22: 0.0733 S23: -0.0591 REMARK 3 S31: 0.3144 S32: 0.1212 S33: 0.0206 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 323 THROUGH 455 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1290 46.2545 -33.6421 REMARK 3 T TENSOR REMARK 3 T11: 0.2996 T22: 0.2286 REMARK 3 T33: 0.3564 T12: 0.0095 REMARK 3 T13: -0.0430 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.1585 L22: 0.3286 REMARK 3 L33: 0.0629 L12: 0.0807 REMARK 3 L13: 0.0131 L23: 0.0059 REMARK 3 S TENSOR REMARK 3 S11: 0.0553 S12: -0.0636 S13: -0.1164 REMARK 3 S21: 0.0537 S22: 0.0774 S23: -0.0095 REMARK 3 S31: 0.2526 S32: 0.0249 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 456 THROUGH 502 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7643 46.1608 -70.5443 REMARK 3 T TENSOR REMARK 3 T11: 0.3760 T22: 0.3549 REMARK 3 T33: 0.3703 T12: 0.0475 REMARK 3 T13: 0.0087 T23: -0.0688 REMARK 3 L TENSOR REMARK 3 L11: 0.0049 L22: 0.0262 REMARK 3 L33: 0.0114 L12: -0.0002 REMARK 3 L13: -0.0014 L23: 0.0086 REMARK 3 S TENSOR REMARK 3 S11: 0.0359 S12: 0.1780 S13: 0.0322 REMARK 3 S21: -0.1754 S22: -0.0182 S23: -0.0233 REMARK 3 S31: -0.0262 S32: -0.0529 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WE9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203631. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35887 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CAPS:NAOH, 30% PEG 400, PH 10.5, REMARK 280 MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 50.57050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.19689 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 128.31033 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 50.57050 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 29.19689 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 128.31033 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 50.57050 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 29.19689 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 128.31033 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 50.57050 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 29.19689 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 128.31033 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 50.57050 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 29.19689 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 128.31033 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 50.57050 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 29.19689 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 128.31033 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 58.39378 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 256.62067 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 58.39378 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 256.62067 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 58.39378 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 256.62067 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 58.39378 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 256.62067 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 58.39378 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 256.62067 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 58.39378 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 256.62067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 50.57050 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 87.59068 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -50.57050 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 87.59068 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -4 REMARK 465 ASP A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLN A 1 REMARK 465 LYS A 2 REMARK 465 LEU A 3 REMARK 465 PRO A 4 REMARK 465 GLY A 5 REMARK 465 ASN A 6 REMARK 465 ASP A 7 REMARK 465 LYS A 326 REMARK 465 GLN A 327 REMARK 465 THR A 328 REMARK 465 ARG A 329 REMARK 465 LYS A 503 REMARK 465 SER A 504 REMARK 465 GLY A 505 REMARK 465 ARG A 506 REMARK 465 LEU A 507 REMARK 465 VAL A 508 REMARK 465 PRO A 509 REMARK 465 ARG A 510 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 859 O HOH A 868 1.86 REMARK 500 ND2 ASN A 483 C2 NAG A 609 2.11 REMARK 500 O ASN A 165 O HOH A 870 2.12 REMARK 500 ND2 ASN A 165 C2 NAG B 1 2.14 REMARK 500 ND2 ASN A 38 C2 NAG A 602 2.16 REMARK 500 O HOH A 783 O HOH A 848 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 22 78.80 -110.11 REMARK 500 GLU A 62 -112.28 56.27 REMARK 500 CYS A 97 -152.01 -133.99 REMARK 500 TRP A 127 50.75 -100.30 REMARK 500 ARG A 141 -124.94 -85.33 REMARK 500 ARG A 142 69.78 -64.96 REMARK 500 SER A 143 -9.34 63.10 REMARK 500 SER A 146 -156.64 -147.51 REMARK 500 ALA A 196 -54.01 65.00 REMARK 500 SER A 199 -103.50 -88.65 REMARK 500 ARG A 224 50.23 35.71 REMARK 500 PHE A 392 -108.56 -116.81 REMARK 500 GLN A 394 -133.04 -123.89 REMARK 500 ARG A 456 -119.87 52.21 REMARK 500 TYR A 470 35.30 -86.62 REMARK 500 PHE A 500 57.15 -105.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WE4 RELATED DB: PDB REMARK 900 RELATED ID: 4WE5 RELATED DB: PDB REMARK 900 RELATED ID: 4WE6 RELATED DB: PDB REMARK 900 RELATED ID: 4WE7 RELATED DB: PDB REMARK 900 RELATED ID: 4WE8 RELATED DB: PDB REMARK 900 RELATED ID: 4WEA RELATED DB: PDB DBREF 4WE9 A 1 503 UNP R9U684 R9U684_9INFA 17 519 SEQADV 4WE9 ALA A -4 UNP R9U684 EXPRESSION TAG SEQADV 4WE9 ASP A -3 UNP R9U684 EXPRESSION TAG SEQADV 4WE9 LEU A -2 UNP R9U684 EXPRESSION TAG SEQADV 4WE9 GLY A -1 UNP R9U684 EXPRESSION TAG SEQADV 4WE9 SER A 0 UNP R9U684 EXPRESSION TAG SEQADV 4WE9 SER A 504 UNP R9U684 EXPRESSION TAG SEQADV 4WE9 GLY A 505 UNP R9U684 EXPRESSION TAG SEQADV 4WE9 ARG A 506 UNP R9U684 EXPRESSION TAG SEQADV 4WE9 LEU A 507 UNP R9U684 EXPRESSION TAG SEQADV 4WE9 VAL A 508 UNP R9U684 EXPRESSION TAG SEQADV 4WE9 PRO A 509 UNP R9U684 EXPRESSION TAG SEQADV 4WE9 ARG A 510 UNP R9U684 EXPRESSION TAG SEQRES 1 A 515 ALA ASP LEU GLY SER GLN LYS LEU PRO GLY ASN ASP ASN SEQRES 2 A 515 SER THR ALA THR LEU CYS LEU GLY HIS HIS ALA VAL PRO SEQRES 3 A 515 ASN GLY THR ILE VAL LYS THR ILE THR ASN ASP GLN ILE SEQRES 4 A 515 GLU VAL THR ASN ALA THR GLU LEU VAL GLN ASN SER SER SEQRES 5 A 515 ILE GLY GLU ILE CYS ASP SER PRO HIS GLN ILE LEU ASP SEQRES 6 A 515 GLY GLU ASN CYS THR LEU ILE ASP ALA LEU LEU GLY ASP SEQRES 7 A 515 PRO GLN CYS ASP GLY PHE GLN ASN LYS LYS TRP ASP LEU SEQRES 8 A 515 PHE VAL GLU ARG SER LYS ALA TYR SER ASN CYS TYR PRO SEQRES 9 A 515 TYR ASP VAL PRO ASP TYR ALA SER LEU ARG SER LEU VAL SEQRES 10 A 515 ALA SER SER GLY THR LEU GLU PHE ASN ASN GLU SER PHE SEQRES 11 A 515 ASN TRP THR GLY VAL THR GLN ASN GLY THR SER SER ALA SEQRES 12 A 515 CYS ILE ARG ARG SER ASN ASN SER PHE PHE SER ARG LEU SEQRES 13 A 515 ASN TRP LEU THR HIS LEU ASN PHE LYS TYR PRO ALA LEU SEQRES 14 A 515 ASN VAL THR MET PRO ASN ASN GLU GLN PHE ASP LYS LEU SEQRES 15 A 515 TYR ILE TRP GLY VAL HIS HIS PRO GLY THR ASP LYS ASP SEQRES 16 A 515 GLN ILE PHE LEU TYR ALA GLN SER SER GLY ARG ILE THR SEQRES 17 A 515 VAL SER THR LYS ARG SER GLN GLN ALA VAL ILE PRO ASN SEQRES 18 A 515 ILE GLY SER ARG PRO ARG ILE ARG ASN ILE PRO SER ARG SEQRES 19 A 515 ILE SER ILE TYR TRP THR ILE VAL LYS PRO GLY ASP ILE SEQRES 20 A 515 LEU LEU ILE ASN SER THR GLY ASN LEU ILE ALA PRO ARG SEQRES 21 A 515 GLY TYR PHE LYS ILE ARG SER GLY LYS SER SER ILE MET SEQRES 22 A 515 ARG SER ASP ALA PRO ILE GLY LYS CYS ASN SER GLU CYS SEQRES 23 A 515 ILE THR PRO ASN GLY SER ILE PRO ASN ASP LYS PRO PHE SEQRES 24 A 515 GLN ASN VAL ASN ARG ILE THR TYR GLY ALA CYS PRO ARG SEQRES 25 A 515 TYR VAL LYS GLN SER THR LEU LYS LEU ALA THR GLY MET SEQRES 26 A 515 ARG ASN VAL PRO GLU LYS GLN THR ARG GLY ILE PHE GLY SEQRES 27 A 515 ALA ILE ALA GLY PHE ILE GLU ASN GLY TRP GLU GLY MET SEQRES 28 A 515 VAL ASP GLY TRP TYR GLY PHE ARG HIS GLN ASN SER GLU SEQRES 29 A 515 GLY ARG GLY GLN ALA ALA ASP LEU LYS SER THR GLN ALA SEQRES 30 A 515 ALA ILE ASP GLN ILE ASN GLY LYS LEU ASN ARG LEU ILE SEQRES 31 A 515 GLY LYS THR ASN GLU LYS PHE HIS GLN ILE GLU LYS GLU SEQRES 32 A 515 PHE SER GLU VAL GLU GLY ARG ILE GLN ASP LEU GLU LYS SEQRES 33 A 515 TYR VAL GLU ASP THR LYS ILE ASP LEU TRP SER TYR ASN SEQRES 34 A 515 ALA GLU LEU LEU VAL ALA LEU GLU ASN GLN HIS THR ILE SEQRES 35 A 515 ASP LEU THR ASP SER GLU MET ASN LYS LEU PHE GLU LYS SEQRES 36 A 515 THR LYS LYS GLN LEU ARG GLU ASN ALA GLU ASP MET GLY SEQRES 37 A 515 ASN GLY CYS PHE LYS ILE TYR HIS LYS CYS ASP ASN ALA SEQRES 38 A 515 CYS ILE GLY SER ILE ARG ASN GLY THR TYR ASP HIS ASP SEQRES 39 A 515 VAL TYR ARG ASP GLU ALA LEU ASN ASN ARG PHE GLN ILE SEQRES 40 A 515 LYS SER GLY ARG LEU VAL PRO ARG HET NAG B 1 14 HET NAG B 2 14 HET NAG A 601 14 HET NAG A 602 14 HET NAG A 603 14 HET NAG A 604 14 HET NAG A 607 14 HET NAG A 608 14 HET NAG A 609 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 9(C8 H15 N O6) FORMUL 10 HOH *188(H2 O) HELIX 1 AA1 THR A 65 GLY A 72 1 8 HELIX 2 AA2 ASP A 73 GLN A 80 5 8 HELIX 3 AA3 ASP A 104 GLY A 116 1 13 HELIX 4 AA4 THR A 187 ALA A 196 1 10 HELIX 5 AA5 ASP A 366 ILE A 385 1 20 HELIX 6 AA6 GLY A 404 ARG A 456 1 53 HELIX 7 AA7 ASP A 474 ASN A 483 1 10 HELIX 8 AA8 ASP A 487 PHE A 500 1 14 SHEET 1 AA1 5 GLY A 360 ALA A 365 0 SHEET 2 AA1 5 TYR A 351 ASN A 357 -1 N PHE A 353 O ALA A 364 SHEET 3 AA1 5 ALA A 11 HIS A 17 -1 N CYS A 14 O ARG A 354 SHEET 4 AA1 5 CYS A 466 ILE A 469 -1 O PHE A 467 N LEU A 13 SHEET 5 AA1 5 ALA A 459 ASP A 461 -1 N GLU A 460 O LYS A 468 SHEET 1 AA2 2 THR A 24 VAL A 26 0 SHEET 2 AA2 2 ILE A 34 VAL A 36 -1 O ILE A 34 N VAL A 26 SHEET 1 AA3 2 ALA A 39 GLU A 41 0 SHEET 2 AA3 2 LYS A 315 ALA A 317 -1 O LEU A 316 N THR A 40 SHEET 1 AA4 3 VAL A 43 GLN A 44 0 SHEET 2 AA4 3 PHE A 294 GLN A 295 1 O PHE A 294 N GLN A 44 SHEET 3 AA4 3 ARG A 307 TYR A 308 1 O ARG A 307 N GLN A 295 SHEET 1 AA5 2 ILE A 51 SER A 54 0 SHEET 2 AA5 2 ILE A 274 ASN A 278 1 O GLY A 275 N ILE A 51 SHEET 1 AA6 3 ILE A 58 ASP A 60 0 SHEET 2 AA6 3 LEU A 86 GLU A 89 1 O VAL A 88 N LEU A 59 SHEET 3 AA6 3 SER A 266 ARG A 269 1 O MET A 268 N PHE A 87 SHEET 1 AA7 5 TYR A 100 ASP A 101 0 SHEET 2 AA7 5 ARG A 229 VAL A 237 1 O ILE A 232 N ASP A 101 SHEET 3 AA7 5 LYS A 176 HIS A 184 -1 N HIS A 184 O ARG A 229 SHEET 4 AA7 5 GLY A 256 LYS A 259 -1 O PHE A 258 N LEU A 177 SHEET 5 AA7 5 PHE A 120 ASN A 122 -1 N ASN A 121 O TYR A 257 SHEET 1 AA8 5 TYR A 100 ASP A 101 0 SHEET 2 AA8 5 ARG A 229 VAL A 237 1 O ILE A 232 N ASP A 101 SHEET 3 AA8 5 LYS A 176 HIS A 184 -1 N HIS A 184 O ARG A 229 SHEET 4 AA8 5 LEU A 251 PRO A 254 -1 O ILE A 252 N GLY A 181 SHEET 5 AA8 5 LEU A 151 TRP A 153 -1 N ASN A 152 O ALA A 253 SHEET 1 AA9 2 VAL A 130 THR A 131 0 SHEET 2 AA9 2 THR A 155 HIS A 156 -1 O THR A 155 N THR A 131 SHEET 1 AB1 2 SER A 136 ILE A 140 0 SHEET 2 AB1 2 ASN A 145 SER A 146 -1 O SER A 146 N CYS A 139 SHEET 1 AB2 4 LEU A 164 PRO A 169 0 SHEET 2 AB2 4 ILE A 242 SER A 247 -1 O ILE A 245 N VAL A 166 SHEET 3 AB2 4 ILE A 202 THR A 206 -1 N THR A 203 O ASN A 246 SHEET 4 AB2 4 SER A 209 VAL A 213 -1 O GLN A 211 N VAL A 204 SHEET 1 AB3 2 CYS A 281 THR A 283 0 SHEET 2 AB3 2 GLY A 286 ILE A 288 -1 O ILE A 288 N CYS A 281 SHEET 1 AB4 2 GLY A 303 CYS A 305 0 SHEET 2 AB4 2 ASN A 389 LYS A 391 -1 O LYS A 391 N GLY A 303 SSBOND 1 CYS A 14 CYS A 466 1555 1555 2.04 SSBOND 2 CYS A 52 CYS A 277 1555 1555 2.04 SSBOND 3 CYS A 64 CYS A 76 1555 1555 2.04 SSBOND 4 CYS A 97 CYS A 139 1555 1555 2.04 SSBOND 5 CYS A 281 CYS A 305 1555 1555 2.03 SSBOND 6 CYS A 473 CYS A 477 1555 1555 2.05 LINK ND2 ASN A 22 C1 NAG A 601 1555 1555 1.44 LINK ND2 ASN A 38 C1 NAG A 602 1555 1555 1.44 LINK ND2 ASN A 63 C1 NAG A 603 1555 1555 1.44 LINK ND2 ASN A 133 C1 NAG A 604 1555 1555 1.44 LINK ND2 ASN A 165 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 246 C1 NAG A 607 1555 1555 1.44 LINK ND2 ASN A 285 C1 NAG A 608 1555 1555 1.45 LINK ND2 ASN A 483 C1 NAG A 609 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 CISPEP 1 SER A 54 PRO A 55 0 0.55 CRYST1 101.141 101.141 384.931 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009887 0.005708 0.000000 0.00000 SCALE2 0.000000 0.011417 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002598 0.00000