HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 11-SEP-14 4WEY TITLE CRYSTAL STRUCTURE OF E.COLI DSBA IN COMPLEX WITH COMPOUND 17 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.8.4.2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI BL21(DE3); SOURCE 3 ORGANISM_TAXID: 469008 KEYWDS DISULFIDE OXIDOREDUCTASE, REDOX PROTEIN, DSBA, OXIDOREDUCTASE- KEYWDS 2 OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.A.ADAMS,P.SHARMA,B.MOHANTY,O.V.ILYICHOVA,M.D.MULCAIR,M.L.WILLIAMS, AUTHOR 2 E.C.GLEESON,M.TOTSIKA,B.C.DOAK,S.CARIA,K.RIMMER,S.R.SHOULDICE, AUTHOR 3 M.VAZIRANI,S.J.HEADEY,B.R.PLUMB,J.L.MARTIN,B.HERAS,J.S.SIMPSON, AUTHOR 4 M.J.SCANLON REVDAT 5 23-OCT-24 4WEY 1 REMARK REVDAT 4 08-NOV-23 4WEY 1 REMARK REVDAT 3 18-OCT-17 4WEY 1 SOURCE JRNL REMARK REVDAT 2 18-FEB-15 4WEY 1 JRNL REVDAT 1 21-JAN-15 4WEY 0 JRNL AUTH L.A.ADAMS,P.SHARMA,B.MOHANTY,O.V.ILYICHOVA,M.D.MULCAIR, JRNL AUTH 2 M.L.WILLIAMS,E.C.GLEESON,M.TOTSIKA,B.C.DOAK,S.CARIA, JRNL AUTH 3 K.RIMMER,J.HORNE,S.R.SHOULDICE,M.VAZIRANI,S.J.HEADEY, JRNL AUTH 4 B.R.PLUMB,J.L.MARTIN,B.HERAS,J.S.SIMPSON,M.J.SCANLON JRNL TITL APPLICATION OF FRAGMENT-BASED SCREENING TO THE DESIGN OF JRNL TITL 2 INHIBITORS OF ESCHERICHIA COLI DSBA. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 54 2179 2015 JRNL REFN ESSN 1521-3773 JRNL PMID 25556635 JRNL DOI 10.1002/ANIE.201410341 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 51883 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 2651 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.4364 - 4.1348 0.98 2659 123 0.1492 0.1622 REMARK 3 2 4.1348 - 3.2823 1.00 2648 143 0.1404 0.1739 REMARK 3 3 3.2823 - 2.8675 1.00 2608 140 0.1676 0.2028 REMARK 3 4 2.8675 - 2.6054 0.99 2577 157 0.1706 0.2105 REMARK 3 5 2.6054 - 2.4187 1.00 2625 133 0.1688 0.2036 REMARK 3 6 2.4187 - 2.2761 1.00 2596 141 0.1674 0.1923 REMARK 3 7 2.2761 - 2.1621 1.00 2601 138 0.1681 0.2075 REMARK 3 8 2.1621 - 2.0680 1.00 2572 149 0.1654 0.2250 REMARK 3 9 2.0680 - 1.9884 1.00 2591 141 0.1791 0.2384 REMARK 3 10 1.9884 - 1.9198 1.00 2617 124 0.1792 0.2192 REMARK 3 11 1.9198 - 1.8597 1.00 2584 156 0.1885 0.2324 REMARK 3 12 1.8597 - 1.8066 1.00 2601 117 0.1804 0.1990 REMARK 3 13 1.8066 - 1.7590 1.00 2555 150 0.1795 0.2016 REMARK 3 14 1.7590 - 1.7161 0.99 2563 161 0.1852 0.2513 REMARK 3 15 1.7161 - 1.6771 1.00 2562 133 0.1934 0.2595 REMARK 3 16 1.6771 - 1.6414 1.00 2593 133 0.2043 0.2265 REMARK 3 17 1.6414 - 1.6086 0.99 2584 123 0.2163 0.2360 REMARK 3 18 1.6086 - 1.5782 1.00 2557 139 0.2325 0.2990 REMARK 3 19 1.5782 - 1.5500 0.99 2539 150 0.2428 0.2864 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3077 REMARK 3 ANGLE : 1.189 4186 REMARK 3 CHIRALITY : 0.048 455 REMARK 3 PLANARITY : 0.006 551 REMARK 3 DIHEDRAL : 15.822 1108 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5628 30.1727 17.4930 REMARK 3 T TENSOR REMARK 3 T11: 0.2303 T22: 0.2107 REMARK 3 T33: 0.2137 T12: 0.0387 REMARK 3 T13: -0.0193 T23: -0.0399 REMARK 3 L TENSOR REMARK 3 L11: 0.7674 L22: 2.2857 REMARK 3 L33: 1.6355 L12: -0.3687 REMARK 3 L13: -0.0542 L23: 0.1585 REMARK 3 S TENSOR REMARK 3 S11: -0.0428 S12: -0.0633 S13: 0.1770 REMARK 3 S21: 0.1962 S22: 0.1393 S23: -0.1149 REMARK 3 S31: -0.2017 S32: 0.1174 S33: -0.0661 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.1561 24.8675 15.0719 REMARK 3 T TENSOR REMARK 3 T11: 0.2077 T22: 0.2457 REMARK 3 T33: 0.2558 T12: 0.0381 REMARK 3 T13: -0.0003 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 1.2260 L22: 2.2150 REMARK 3 L33: 1.9076 L12: -1.1660 REMARK 3 L13: 0.4526 L23: -0.0793 REMARK 3 S TENSOR REMARK 3 S11: 0.0835 S12: -0.0001 S13: 0.2259 REMARK 3 S21: 0.2737 S22: -0.0253 S23: -0.4110 REMARK 3 S31: -0.1564 S32: 0.1811 S33: -0.0019 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8585 9.9620 8.6669 REMARK 3 T TENSOR REMARK 3 T11: 0.1738 T22: 0.1695 REMARK 3 T33: 0.1743 T12: 0.0433 REMARK 3 T13: -0.0051 T23: -0.0245 REMARK 3 L TENSOR REMARK 3 L11: 3.7636 L22: 1.7227 REMARK 3 L33: 0.8549 L12: -0.4415 REMARK 3 L13: 0.2224 L23: 0.3137 REMARK 3 S TENSOR REMARK 3 S11: -0.0166 S12: 0.3142 S13: -0.3715 REMARK 3 S21: 0.0293 S22: 0.0519 S23: -0.0601 REMARK 3 S31: 0.1238 S32: 0.0986 S33: 0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 129 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.4097 16.3300 19.1719 REMARK 3 T TENSOR REMARK 3 T11: 0.1997 T22: 0.2800 REMARK 3 T33: 0.2594 T12: 0.0829 REMARK 3 T13: -0.0917 T23: -0.0380 REMARK 3 L TENSOR REMARK 3 L11: 2.0726 L22: 2.7218 REMARK 3 L33: 3.0959 L12: -0.9466 REMARK 3 L13: -1.9825 L23: 2.0243 REMARK 3 S TENSOR REMARK 3 S11: -0.1722 S12: -0.4054 S13: 0.1380 REMARK 3 S21: 0.1760 S22: 0.1575 S23: -0.4435 REMARK 3 S31: 0.0343 S32: 0.3477 S33: -0.1874 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6702 29.5795 23.9194 REMARK 3 T TENSOR REMARK 3 T11: 0.2960 T22: 0.2981 REMARK 3 T33: 0.2919 T12: 0.0497 REMARK 3 T13: -0.0937 T23: -0.1073 REMARK 3 L TENSOR REMARK 3 L11: 1.6425 L22: 2.5857 REMARK 3 L33: 1.6079 L12: 0.1004 REMARK 3 L13: -1.1749 L23: -1.3607 REMARK 3 S TENSOR REMARK 3 S11: -0.0887 S12: -0.4427 S13: 0.3374 REMARK 3 S21: 0.5477 S22: 0.2129 S23: -0.4162 REMARK 3 S31: -0.2237 S32: 0.1314 S33: -0.0154 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2542 37.9579 17.0425 REMARK 3 T TENSOR REMARK 3 T11: 0.2371 T22: 0.1309 REMARK 3 T33: 0.2681 T12: 0.0061 REMARK 3 T13: 0.0085 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 5.2041 L22: 2.4656 REMARK 3 L33: 2.6072 L12: -0.3839 REMARK 3 L13: 0.3653 L23: 0.2520 REMARK 3 S TENSOR REMARK 3 S11: -0.0524 S12: -0.0692 S13: 0.5011 REMARK 3 S21: 0.0898 S22: 0.1282 S23: -0.0315 REMARK 3 S31: -0.2234 S32: 0.0592 S33: -0.0554 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9028 7.6951 18.1047 REMARK 3 T TENSOR REMARK 3 T11: 0.1744 T22: 0.1643 REMARK 3 T33: 0.1340 T12: 0.0347 REMARK 3 T13: 0.0027 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.9498 L22: 2.0381 REMARK 3 L33: 0.5188 L12: -0.3116 REMARK 3 L13: 0.1919 L23: 0.1016 REMARK 3 S TENSOR REMARK 3 S11: 0.0747 S12: 0.1083 S13: -0.0561 REMARK 3 S21: -0.0262 S22: -0.0335 S23: 0.1089 REMARK 3 S31: 0.0821 S32: -0.0604 S33: -0.0478 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 50 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2040 14.9253 18.4678 REMARK 3 T TENSOR REMARK 3 T11: 0.1600 T22: 0.1996 REMARK 3 T33: 0.2517 T12: 0.0344 REMARK 3 T13: 0.0132 T23: 0.0284 REMARK 3 L TENSOR REMARK 3 L11: 1.0961 L22: 3.2976 REMARK 3 L33: 3.2316 L12: -0.6845 REMARK 3 L13: -0.5161 L23: -0.1812 REMARK 3 S TENSOR REMARK 3 S11: 0.1158 S12: -0.1160 S13: -0.3280 REMARK 3 S21: 0.0906 S22: -0.3137 S23: -0.0273 REMARK 3 S31: -0.0269 S32: -0.1734 S33: 0.1216 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3180 28.6139 9.8629 REMARK 3 T TENSOR REMARK 3 T11: 0.1322 T22: 0.1561 REMARK 3 T33: 0.1548 T12: 0.0366 REMARK 3 T13: 0.0085 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 1.7854 L22: 1.4268 REMARK 3 L33: 1.6895 L12: -0.3429 REMARK 3 L13: 0.3107 L23: -0.3433 REMARK 3 S TENSOR REMARK 3 S11: -0.0434 S12: 0.1553 S13: 0.1537 REMARK 3 S21: -0.0029 S22: -0.0084 S23: 0.0373 REMARK 3 S31: -0.0959 S32: -0.0055 S33: 0.0441 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9260 24.5437 25.5661 REMARK 3 T TENSOR REMARK 3 T11: 0.2713 T22: 0.2876 REMARK 3 T33: 0.1851 T12: 0.1003 REMARK 3 T13: 0.0758 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 2.4299 L22: 2.1899 REMARK 3 L33: 0.9537 L12: -1.1509 REMARK 3 L13: 1.5207 L23: -0.7722 REMARK 3 S TENSOR REMARK 3 S11: -0.0813 S12: -0.3998 S13: 0.1446 REMARK 3 S21: 0.5871 S22: 0.3159 S23: 0.3126 REMARK 3 S31: -0.5821 S32: -0.3245 S33: -0.2277 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1909 9.1844 25.4140 REMARK 3 T TENSOR REMARK 3 T11: 0.2231 T22: 0.2298 REMARK 3 T33: 0.1402 T12: 0.0390 REMARK 3 T13: 0.0246 T23: 0.0290 REMARK 3 L TENSOR REMARK 3 L11: 2.7174 L22: 3.4800 REMARK 3 L33: 2.5924 L12: 0.4517 REMARK 3 L13: 0.2129 L23: -1.0429 REMARK 3 S TENSOR REMARK 3 S11: -0.0322 S12: -0.3410 S13: -0.0828 REMARK 3 S21: 0.3586 S22: -0.0279 S23: 0.0391 REMARK 3 S31: 0.0452 S32: 0.0534 S33: -0.0667 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 162 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0709 -0.1542 15.6715 REMARK 3 T TENSOR REMARK 3 T11: 0.4114 T22: 0.4262 REMARK 3 T33: 0.4967 T12: 0.1377 REMARK 3 T13: 0.0022 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 1.9798 L22: 0.3245 REMARK 3 L33: 1.1383 L12: 0.4788 REMARK 3 L13: 1.4340 L23: 0.3120 REMARK 3 S TENSOR REMARK 3 S11: 0.3707 S12: 0.7117 S13: -0.6730 REMARK 3 S21: -0.3622 S22: -0.1099 S23: -0.7423 REMARK 3 S31: 0.5111 S32: 0.5725 S33: -0.0756 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 171 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9018 -0.5983 15.0242 REMARK 3 T TENSOR REMARK 3 T11: 0.3492 T22: 0.1992 REMARK 3 T33: 0.2210 T12: 0.0871 REMARK 3 T13: -0.0487 T23: -0.0368 REMARK 3 L TENSOR REMARK 3 L11: 3.1496 L22: 2.2722 REMARK 3 L33: 2.7542 L12: 0.2990 REMARK 3 L13: -0.0974 L23: -0.7679 REMARK 3 S TENSOR REMARK 3 S11: 0.1318 S12: 0.2384 S13: -0.4548 REMARK 3 S21: -0.7226 S22: 0.0076 S23: 0.1161 REMARK 3 S31: 0.5952 S32: 0.1462 S33: 0.0205 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WEY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203691. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12820 REMARK 200 MONOCHROMATOR : DOUBLE SI WITH SAGITTALY BENT REMARK 200 SECOND CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SCALA REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51902 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 46.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.42700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1FVK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100-200 MM KBR, 28-33% PEG 2000 MME, REMARK 280 PH 7.0, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.94300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.58400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.94300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.58400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 306 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 189 REMARK 465 LYS B 189 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 2 CG CD OE1 NE2 REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 GLU A 52 OE1 OE2 REMARK 470 LYS A 70 CD CE NZ REMARK 470 LYS A 118 CE NZ REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 ARG A 148 NH1 NH2 REMARK 470 LYS A 158 CD CE NZ REMARK 470 GLU B 13 OE1 OE2 REMARK 470 LYS B 14 CE NZ REMARK 470 LYS B 47 NZ REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 LYS B 55 CD CE NZ REMARK 470 MET B 64 CG SD CE REMARK 470 LYS B 118 CD CE NZ REMARK 470 GLU B 120 CG CD OE1 OE2 REMARK 470 ARG B 148 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 164 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 247 O HOH A 284 1.95 REMARK 500 OD2 ASP A 167 O HOH A 201 2.12 REMARK 500 ND2 ASN A 127 O HOH A 435 2.14 REMARK 500 O HOH B 547 O HOH B 554 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 30 CA - CB - SG ANGL. DEV. = 7.4 DEGREES REMARK 500 CYS B 30 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 -79.06 -98.58 REMARK 500 LYS B 7 -87.02 -97.46 REMARK 500 ASN B 170 117.86 -172.26 REMARK 500 ASN B 170 118.61 -172.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 EG6 B 202 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EG6 B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FVK RELATED DB: PDB REMARK 900 RELATED ID: 4WF4 RELATED DB: PDB REMARK 900 RELATED ID: 4WF5 RELATED DB: PDB REMARK 900 RELATED ID: 4WET RELATED DB: PDB DBREF 4WEY A 1 189 UNP C5WBA2 C5WBA2_ECOBD 20 208 DBREF 4WEY B 1 189 UNP C5WBA2 C5WBA2_ECOBD 20 208 SEQRES 1 A 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 A 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 A 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 A 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 A 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 A 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 A 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 A 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 A 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 A 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 A 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 A 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 A 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 A 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 A 189 LYS TYR LEU SER GLU LYS LYS SEQRES 1 B 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 B 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 B 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 B 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 B 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 B 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 B 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 B 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 B 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 B 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 B 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 B 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 B 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 B 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 B 189 LYS TYR LEU SER GLU LYS LYS HET EDO B 201 4 HET EG6 B 202 22 HETNAM EDO 1,2-ETHANEDIOL HETNAM EG6 N-({4-METHYL-2-[4-(TRIFLUOROMETHYL)PHENYL]-1,3-THIAZOL- HETNAM 2 EG6 5-YL}CARBONYL)-L-SERINE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO C2 H6 O2 FORMUL 4 EG6 C15 H13 F3 N2 O4 S FORMUL 5 HOH *520(H2 O) HELIX 1 AA1 CYS A 30 VAL A 39 1 10 HELIX 2 AA2 HIS A 41 LEU A 50 1 10 HELIX 3 AA3 GLY A 65 GLY A 83 1 19 HELIX 4 AA4 VAL A 84 LYS A 98 1 15 HELIX 5 AA5 SER A 104 ALA A 115 1 12 HELIX 6 AA6 LYS A 118 ASN A 127 1 10 HELIX 7 AA7 SER A 128 VAL A 145 1 18 HELIX 8 AA8 PRO A 163 MET A 166 5 4 HELIX 9 AA9 ASN A 170 GLU A 187 1 18 HELIX 10 AB1 CYS B 30 VAL B 39 1 10 HELIX 11 AB2 HIS B 41 LEU B 50 1 10 HELIX 12 AB3 GLY B 65 GLY B 83 1 19 HELIX 13 AB4 VAL B 84 LYS B 98 1 15 HELIX 14 AB5 SER B 104 ALA B 115 1 12 HELIX 15 AB6 LYS B 118 ASN B 127 1 10 HELIX 16 AB7 SER B 128 VAL B 145 1 18 HELIX 17 AB8 PRO B 163 MET B 166 5 4 HELIX 18 AB9 ASN B 170 GLU B 187 1 18 SHEET 1 AA1 5 TYR A 9 THR A 11 0 SHEET 2 AA1 5 TYR A 159 LEU A 161 -1 O GLN A 160 N THR A 10 SHEET 3 AA1 5 ALA A 152 VAL A 155 -1 N MET A 153 O LEU A 161 SHEET 4 AA1 5 VAL A 22 PHE A 26 -1 N PHE A 25 O ALA A 152 SHEET 5 AA1 5 MET A 56 HIS A 60 1 O THR A 57 N GLU A 24 SHEET 1 AA2 5 TYR B 9 THR B 11 0 SHEET 2 AA2 5 TYR B 159 LEU B 161 -1 O GLN B 160 N THR B 10 SHEET 3 AA2 5 ALA B 152 VAL B 155 -1 N MET B 153 O LEU B 161 SHEET 4 AA2 5 VAL B 22 PHE B 26 -1 N LEU B 23 O PHE B 154 SHEET 5 AA2 5 MET B 56 HIS B 60 1 O THR B 57 N GLU B 24 SSBOND 1 CYS A 30 CYS A 33 1555 1555 2.09 SSBOND 2 CYS B 30 CYS B 33 1555 1555 2.14 CISPEP 1 VAL A 150 PRO A 151 0 -4.33 CISPEP 2 VAL B 150 PRO B 151 0 -3.42 CISPEP 3 GLN B 164 GLY B 165 0 10.04 SITE 1 AC1 3 GLN B 146 LEU B 147 ARG B 148 SITE 1 AC2 12 HIS A 32 PHE A 36 LEU A 40 PRO A 151 SITE 2 AC2 12 PRO A 163 THR A 168 MET A 171 PHE A 174 SITE 3 AC2 12 MET B 64 GLY B 65 LEU B 68 HOH B 485 CRYST1 123.886 47.168 62.240 90.00 96.31 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008072 0.000000 0.000893 0.00000 SCALE2 0.000000 0.021201 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016165 0.00000