HEADER HYDROLASE/HYDROLASE INHIBITOR 13-SEP-14 4WF8 TITLE CRYSTAL STRUCTURE OF NS3/4A PROTEASE IN COMPLEX WITH ASUNAPREVIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: NS3 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 3 ORGANISM_TAXID: 11103; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS HCV PROTEASE INHIBITOR COMPLEX, RESISTANCE, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.A.SCHIFFER,D.I.SOUMANA,A.ALI REVDAT 7 27-DEC-23 4WF8 1 REMARK REVDAT 6 11-DEC-19 4WF8 1 REMARK REVDAT 5 06-SEP-17 4WF8 1 REMARK REVDAT 4 25-NOV-15 4WF8 1 HETSYN REVDAT 3 09-SEP-15 4WF8 1 REMARK REVDAT 2 03-DEC-14 4WF8 1 JRNL REVDAT 1 08-OCT-14 4WF8 0 JRNL AUTH D.I.SOUMANA,A.ALI,C.A.SCHIFFER JRNL TITL STRUCTURAL ANALYSIS OF ASUNAPREVIR RESISTANCE IN HCV NS3/4A JRNL TITL 2 PROTEASE. JRNL REF ACS CHEM.BIOL. V. 9 2485 2014 JRNL REFN ESSN 1554-8937 JRNL PMID 25243902 JRNL DOI 10.1021/CB5006118 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 3 NUMBER OF REFLECTIONS : 22005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1123 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.5991 - 3.3050 0.93 2796 134 0.1812 0.1691 REMARK 3 2 3.3050 - 2.6237 0.99 2836 161 0.1913 0.2477 REMARK 3 3 2.6237 - 2.2922 0.99 2800 152 0.1845 0.2240 REMARK 3 4 2.2922 - 2.0827 0.81 2278 123 0.1929 0.2198 REMARK 3 5 2.0827 - 1.9334 0.97 2750 151 0.1890 0.2270 REMARK 3 6 1.9334 - 1.8194 0.76 2113 120 0.2505 0.2856 REMARK 3 7 1.8194 - 1.7283 0.97 2689 149 0.1969 0.2348 REMARK 3 8 1.7283 - 1.6531 0.93 2620 133 0.2137 0.2548 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.080 1454 REMARK 3 ANGLE : 1.692 2006 REMARK 3 CHIRALITY : 0.119 241 REMARK 3 PLANARITY : 0.008 252 REMARK 3 DIHEDRAL : 20.643 537 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 989 THROUGH 1009 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.4296 -2.7720 21.9112 REMARK 3 T TENSOR REMARK 3 T11: 0.1225 T22: 0.0760 REMARK 3 T33: 0.0825 T12: -0.0241 REMARK 3 T13: -0.0052 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.2397 L22: 0.1861 REMARK 3 L33: 0.3047 L12: -0.0366 REMARK 3 L13: 0.1413 L23: -0.2237 REMARK 3 S TENSOR REMARK 3 S11: -0.0497 S12: -0.0446 S13: -0.1007 REMARK 3 S21: -0.0512 S22: 0.0675 S23: -0.0533 REMARK 3 S31: 0.0789 S32: -0.0673 S33: 0.0004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1010 THROUGH 1032 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.3702 0.7895 30.6341 REMARK 3 T TENSOR REMARK 3 T11: 0.1819 T22: 0.1486 REMARK 3 T33: 0.1583 T12: 0.0200 REMARK 3 T13: -0.0390 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.2433 L22: 0.7638 REMARK 3 L33: 0.2954 L12: 0.0728 REMARK 3 L13: 0.0842 L23: -0.4246 REMARK 3 S TENSOR REMARK 3 S11: 0.1391 S12: -0.1230 S13: -0.0298 REMARK 3 S21: 0.1949 S22: -0.1314 S23: -0.0829 REMARK 3 S31: 0.0147 S32: -0.0938 S33: -0.0003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1033 THROUGH 1074 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.9235 8.1315 21.8447 REMARK 3 T TENSOR REMARK 3 T11: 0.0539 T22: 0.0643 REMARK 3 T33: 0.0671 T12: 0.0057 REMARK 3 T13: -0.0068 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.4555 L22: 0.6523 REMARK 3 L33: 0.6076 L12: 0.2616 REMARK 3 L13: 0.1480 L23: -0.2335 REMARK 3 S TENSOR REMARK 3 S11: -0.0476 S12: -0.0554 S13: 0.0321 REMARK 3 S21: 0.1135 S22: -0.0072 S23: -0.0787 REMARK 3 S31: -0.0150 S32: 0.0476 S33: -0.0823 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1075 THROUGH 1107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.4329 5.9042 10.2584 REMARK 3 T TENSOR REMARK 3 T11: 0.0955 T22: 0.0701 REMARK 3 T33: 0.0754 T12: -0.0016 REMARK 3 T13: 0.0016 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.4106 L22: 1.0066 REMARK 3 L33: 1.0987 L12: -0.1301 REMARK 3 L13: -0.2252 L23: 0.1571 REMARK 3 S TENSOR REMARK 3 S11: -0.0226 S12: 0.1069 S13: 0.0397 REMARK 3 S21: -0.1168 S22: -0.0002 S23: -0.1170 REMARK 3 S31: 0.1159 S32: 0.0667 S33: -0.0526 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1108 THROUGH 1135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.6440 6.0583 9.9752 REMARK 3 T TENSOR REMARK 3 T11: 0.1108 T22: 0.1392 REMARK 3 T33: 0.1185 T12: -0.0313 REMARK 3 T13: -0.0132 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.5608 L22: 0.4642 REMARK 3 L33: 0.4264 L12: -0.1759 REMARK 3 L13: 0.2653 L23: 0.2712 REMARK 3 S TENSOR REMARK 3 S11: 0.0115 S12: 0.1245 S13: -0.0163 REMARK 3 S21: -0.1774 S22: 0.0639 S23: 0.1165 REMARK 3 S31: -0.0279 S32: -0.1456 S33: 0.0030 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1136 THROUGH 1180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.3708 9.2219 8.8069 REMARK 3 T TENSOR REMARK 3 T11: 0.0759 T22: 0.0770 REMARK 3 T33: 0.0855 T12: -0.0167 REMARK 3 T13: 0.0034 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.3587 L22: 0.9189 REMARK 3 L33: 1.2268 L12: 0.0416 REMARK 3 L13: 0.3616 L23: -0.0007 REMARK 3 S TENSOR REMARK 3 S11: -0.0620 S12: 0.0681 S13: 0.0690 REMARK 3 S21: -0.1771 S22: 0.1092 S23: 0.0022 REMARK 3 S31: -0.0031 S32: 0.0316 S33: 0.0323 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WF8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203710. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22158 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.31500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 TO 26% PEG-3350, 0.1 M SODIUM MES REMARK 280 BUFFER AT PH 6.5, AND 4% AMMONIUM SULFATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.67500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.43750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.44650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.43750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.67500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.44650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A1017 CG CD OE1 NE2 REMARK 470 GLU A1018 CG CD OE1 OE2 REMARK 470 GLN A1021 CG CD OE1 NE2 REMARK 470 ARG A1024 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1026 CG CD CE NZ REMARK 470 GLN A1028 CG CD OE1 NE2 REMARK 470 ASN A1049 CG OD1 ND2 REMARK 470 LYS A1068 CG CD CE NZ REMARK 470 GLN A1089 CG CD OE1 NE2 REMARK 470 ARG A1092 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1117 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1136 CG CD CE NZ REMARK 470 LYS A1165 CG CD CE NZ REMARK 470 GLU A1176 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 1159 O HOH A 1305 1.37 REMARK 500 HH22 ARG A 1011 O HOH A 1302 1.42 REMARK 500 HE ARG A 1123 O HOH A 1303 1.55 REMARK 500 HD1 HIS A 1110 O HOH A 1312 1.55 REMARK 500 O HOH A 1303 O HOH A 1304 1.82 REMARK 500 O HOH A 1510 O HOH A 1515 1.85 REMARK 500 O HOH A 1482 O HOH A 1534 1.86 REMARK 500 O HOH A 1539 O HOH A 1543 1.92 REMARK 500 O HOH A 1506 O HOH A 1514 1.94 REMARK 500 O HOH A 1317 O HOH A 1461 1.94 REMARK 500 OD1 ASP A 1079 O HOH A 1301 1.99 REMARK 500 NH2 ARG A 1011 O HOH A 1302 2.10 REMARK 500 O HOH A 1500 O HOH A 1522 2.11 REMARK 500 NE ARG A 1123 O HOH A 1303 2.12 REMARK 500 OD1 ASP A 1168 O HOH A 1303 2.12 REMARK 500 OD1 ASP A 1168 O HOH A 1304 2.13 REMARK 500 O HOH A 1396 O HOH A 1484 2.14 REMARK 500 OG SER A 1159 O HOH A 1305 2.17 REMARK 500 O HOH A 1460 O HOH A 1513 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1511 O HOH A 1533 3755 2.07 REMARK 500 O HOH A 1365 O HOH A 1407 3755 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 997 CZ ARG A 997 NH2 -0.083 REMARK 500 TYR A1006 CD1 TYR A1006 CE1 -0.105 REMARK 500 TYR A1006 CE1 TYR A1006 CZ -0.108 REMARK 500 TYR A1006 CZ TYR A1006 CE2 -0.084 REMARK 500 TYR A1006 CE2 TYR A1006 CD2 -0.135 REMARK 500 SER A1093 CB SER A1093 OG -0.085 REMARK 500 TYR A1105 CE2 TYR A1105 CD2 -0.092 REMARK 500 VAL A1113 CB VAL A1113 CG1 -0.137 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1119 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A1119 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A1130 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A1130 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A1038 -157.77 -109.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1538 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A1539 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH A1540 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH A1541 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH A1542 DISTANCE = 7.29 ANGSTROMS REMARK 525 HOH A1543 DISTANCE = 7.47 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1097 SG REMARK 620 2 CYS A1099 SG 116.3 REMARK 620 3 CYS A1145 SG 110.5 119.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2R9 A 1203 DBREF 4WF8 A 1004 1180 UNP X2G809 X2G809_9HEPC 4 180 SEQADV 4WF8 LYS A 989 UNP X2G809 EXPRESSION TAG SEQADV 4WF8 GLY A 990 UNP X2G809 EXPRESSION TAG SEQADV 4WF8 SER A 991 UNP X2G809 EXPRESSION TAG SEQADV 4WF8 VAL A 992 UNP X2G809 EXPRESSION TAG SEQADV 4WF8 VAL A 993 UNP X2G809 EXPRESSION TAG SEQADV 4WF8 ILE A 994 UNP X2G809 EXPRESSION TAG SEQADV 4WF8 VAL A 995 UNP X2G809 EXPRESSION TAG SEQADV 4WF8 GLY A 996 UNP X2G809 EXPRESSION TAG SEQADV 4WF8 ARG A 997 UNP X2G809 EXPRESSION TAG SEQADV 4WF8 ILE A 998 UNP X2G809 EXPRESSION TAG SEQADV 4WF8 ASN A 999 UNP X2G809 EXPRESSION TAG SEQADV 4WF8 LEU A 1000 UNP X2G809 EXPRESSION TAG SEQADV 4WF8 SER A 1001 UNP X2G809 EXPRESSION TAG SEQADV 4WF8 GLY A 1002 UNP X2G809 EXPRESSION TAG SEQADV 4WF8 ASP A 1003 UNP X2G809 EXPRESSION TAG SEQADV 4WF8 ALA A 1013 UNP X2G809 LEU 13 CONFLICT SEQADV 4WF8 ALA A 1014 UNP X2G809 LEU 14 CONFLICT SEQADV 4WF8 ALA A 1015 UNP X2G809 GLY 15 CONFLICT SEQADV 4WF8 GLN A 1017 UNP X2G809 ILE 17 CONFLICT SEQADV 4WF8 GLU A 1018 UNP X2G809 ILE 18 CONFLICT SEQADV 4WF8 GLN A 1021 UNP X2G809 LEU 21 CONFLICT SEQADV 4WF8 SER A 1047 UNP X2G809 CYS 47 CONFLICT SEQADV 4WF8 LEU A 1052 UNP X2G809 CYS 52 CONFLICT SEQADV 4WF8 THR A 1072 UNP X2G809 ILE 72 CONFLICT SEQADV 4WF8 GLN A 1086 UNP X2G809 PRO 86 CONFLICT SEQADV 4WF8 ARG A 1155 UNP X2G809 LYS 155 CONFLICT SEQADV 4WF8 SER A 1159 UNP X2G809 CYS 159 CONFLICT SEQRES 1 A 192 LYS GLY SER VAL VAL ILE VAL GLY ARG ILE ASN LEU SER SEQRES 2 A 192 GLY ASP THR ALA TYR ALA GLN GLN THR ARG GLY ALA ALA SEQRES 3 A 192 ALA CYS GLN GLU THR SER GLN THR GLY ARG ASP LYS ASN SEQRES 4 A 192 GLN VAL GLU GLY GLU VAL GLN ILE VAL SER THR ALA THR SEQRES 5 A 192 GLN THR PHE LEU ALA THR SER ILE ASN GLY VAL LEU TRP SEQRES 6 A 192 THR VAL TYR HIS GLY ALA GLY THR ARG THR ILE ALA SER SEQRES 7 A 192 PRO LYS GLY PRO VAL THR GLN MET TYR THR ASN VAL ASP SEQRES 8 A 192 LYS ASP LEU VAL GLY TRP GLN ALA PRO GLN GLY SER ARG SEQRES 9 A 192 SER LEU THR PRO CYS THR CYS GLY SER SER ASP LEU TYR SEQRES 10 A 192 LEU VAL THR ARG HIS ALA ASP VAL ILE PRO VAL ARG ARG SEQRES 11 A 192 ARG GLY ASP SER ARG GLY SER LEU LEU SER PRO ARG PRO SEQRES 12 A 192 ILE SER TYR LEU LYS GLY SER SER GLY GLY PRO LEU LEU SEQRES 13 A 192 CYS PRO ALA GLY HIS ALA VAL GLY ILE PHE ARG ALA ALA SEQRES 14 A 192 VAL SER THR ARG GLY VAL ALA LYS ALA VAL ASP PHE ILE SEQRES 15 A 192 PRO VAL GLU SER LEU GLU THR THR MET ARG HET ZN A1201 1 HET CL A1202 1 HET 2R9 A1203 97 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM 2R9 N-(TERT-BUTOXYCARBONYL)-3-METHYL-L-VALYL-(4R)-4-[(7- HETNAM 2 2R9 CHLORO-4-METHOXYISOQUINOLIN-1-YL)OXY]-N-{(1R,2S)-1- HETNAM 3 2R9 [(CYCLOPROPYLSULFONYL)CARBAMOYL]-2- HETNAM 4 2R9 ETHENYLCYCLOPROPYL}-L-PROLINAMIDE HETSYN 2R9 ASUNAPREVIR FORMUL 2 ZN ZN 2+ FORMUL 3 CL CL 1- FORMUL 4 2R9 C35 H46 CL N5 O9 S FORMUL 5 HOH *243(H2 O) HELIX 1 AA1 CYS A 1016 GLY A 1023 1 8 HELIX 2 AA2 TYR A 1056 GLY A 1060 1 5 HELIX 3 AA3 ILE A 1132 LYS A 1136 1 5 HELIX 4 AA4 VAL A 1172 ARG A 1180 1 9 SHEET 1 AA1 7 TYR A1006 GLN A1009 0 SHEET 2 AA1 7 VAL A 993 ASN A 999 -1 N ARG A 997 O GLN A1008 SHEET 3 AA1 7 VAL A1033 SER A1037 -1 O VAL A1033 N ILE A 998 SHEET 4 AA1 7 THR A1042 ILE A1048 -1 O ALA A1045 N GLN A1034 SHEET 5 AA1 7 VAL A1051 VAL A1055 -1 O TRP A1053 N THR A1046 SHEET 6 AA1 7 LEU A1082 GLN A1086 -1 O TRP A1085 N LEU A1052 SHEET 7 AA1 7 TYR A1075 ASN A1077 -1 N ASN A1077 O LEU A1082 SHEET 1 AA2 7 ASP A1103 VAL A1107 0 SHEET 2 AA2 7 VAL A1113 ARG A1118 -1 O VAL A1116 N LEU A1104 SHEET 3 AA2 7 ARG A1123 PRO A1131 -1 O SER A1125 N ARG A1117 SHEET 4 AA2 7 VAL A1163 PRO A1171 -1 O ALA A1164 N ARG A1130 SHEET 5 AA2 7 ALA A1150 THR A1160 -1 N ALA A1156 O ASP A1168 SHEET 6 AA2 7 PRO A1142 LEU A1144 -1 N LEU A1143 O VAL A1151 SHEET 7 AA2 7 ASP A1103 VAL A1107 -1 N TYR A1105 O LEU A1144 LINK SG CYS A1097 ZN ZN A1201 1555 1555 2.29 LINK SG CYS A1099 ZN ZN A1201 1555 1555 2.14 LINK SG CYS A1145 ZN ZN A1201 1555 1555 2.34 CISPEP 1 ALA A 1014 ALA A 1015 0 -0.95 SITE 1 AC1 4 CYS A1097 CYS A1099 CYS A1145 HIS A1149 SITE 1 AC2 5 ILE A 994 ARG A1011 ASP A1025 ASN A1027 SITE 2 AC2 5 HOH A1350 SITE 1 AC3 23 ARG A 997 TYR A1006 ALA A1007 GLN A1008 SITE 2 AC3 23 GLU A1030 PHE A1043 HIS A1057 VAL A1078 SITE 3 AC3 23 ASP A1081 ARG A1123 ILE A1132 LEU A1135 SITE 4 AC3 23 LYS A1136 GLY A1137 SER A1139 PHE A1154 SITE 5 AC3 23 ARG A1155 ALA A1156 ALA A1157 ASP A1168 SITE 6 AC3 23 HOH A1363 HOH A1385 HOH A1394 CRYST1 39.350 60.893 80.875 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025413 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016422 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012365 0.00000