HEADER TRANSFERASE 17-SEP-14 4WFX TITLE COXSACKIEVIRUS B3 POLYMERASE - F232L MUTANT - NACL CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1724-2185; COMPND 5 SYNONYM: RDRP, GENOME POLYPROTEIN; COMPND 6 EC: 2.7.7.48; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COXSACKIEVIRUS B3; SOURCE 3 ORGANISM_TAXID: 103903; SOURCE 4 STRAIN: NANCY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET26/UB KEYWDS RNA-DEPENDENT RNA POLYMERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR O.B.PEERSEN,S.M.MCDONALD REVDAT 7 27-SEP-23 4WFX 1 REMARK LINK REVDAT 6 11-DEC-19 4WFX 1 SEQADV ATOM REVDAT 5 22-NOV-17 4WFX 1 REMARK REVDAT 4 13-SEP-17 4WFX 1 SOURCE JRNL REMARK REVDAT 3 24-DEC-14 4WFX 1 JRNL REVDAT 2 29-OCT-14 4WFX 1 JRNL REVDAT 1 22-OCT-14 4WFX 0 JRNL AUTH G.CAMPAGNOLA,S.MCDONALD,S.BEAUCOURT,M.VIGNUZZI,O.B.PEERSEN JRNL TITL STRUCTURE-FUNCTION RELATIONSHIPS UNDERLYING THE REPLICATION JRNL TITL 2 FIDELITY OF VIRAL RNA-DEPENDENT RNA POLYMERASES. JRNL REF J.VIROL. V. 89 275 2015 JRNL REFN ESSN 1098-5514 JRNL PMID 25320316 JRNL DOI 10.1128/JVI.01574-14 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 74779 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.660 REMARK 3 FREE R VALUE TEST SET COUNT : 1987 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.6027 - 4.3564 1.00 5639 155 0.1735 0.1904 REMARK 3 2 4.3564 - 3.4580 1.00 5384 146 0.1545 0.1968 REMARK 3 3 3.4580 - 3.0209 1.00 5286 146 0.1885 0.2223 REMARK 3 4 3.0209 - 2.7447 1.00 5255 143 0.2053 0.2449 REMARK 3 5 2.7447 - 2.5480 1.00 5222 142 0.2107 0.2438 REMARK 3 6 2.5480 - 2.3978 1.00 5163 142 0.2134 0.2612 REMARK 3 7 2.3978 - 2.2777 1.00 5203 142 0.2081 0.2544 REMARK 3 8 2.2777 - 2.1785 1.00 5187 142 0.2185 0.2649 REMARK 3 9 2.1785 - 2.0947 1.00 5173 141 0.2203 0.2426 REMARK 3 10 2.0947 - 2.0224 1.00 5139 140 0.2253 0.2707 REMARK 3 11 2.0224 - 1.9591 1.00 5109 139 0.2412 0.2791 REMARK 3 12 1.9591 - 1.9031 1.00 5193 142 0.2585 0.3099 REMARK 3 13 1.9031 - 1.8530 1.00 5141 140 0.2624 0.2967 REMARK 3 14 1.8530 - 1.8078 0.92 4698 127 0.2756 0.2784 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3779 REMARK 3 ANGLE : 1.063 5117 REMARK 3 CHIRALITY : 0.071 559 REMARK 3 PLANARITY : 0.005 650 REMARK 3 DIHEDRAL : 13.188 1398 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WFX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203752. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74782 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 52.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3DDK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.085 M HEPES, 3.655 M NACL, 15% REMARK 280 GLYCEROL, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 144.02500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.18000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.18000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 216.03750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.18000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.18000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.01250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.18000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.18000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 216.03750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.18000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.18000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 72.01250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 144.02500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 682 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 629 O HOH A 1174 1.99 REMARK 500 O HOH A 956 O HOH A 1009 2.10 REMARK 500 O HOH A 832 O HOH A 953 2.11 REMARK 500 OG1 THR A 156 O HOH A 1232 2.11 REMARK 500 O HOH A 627 O HOH A 1077 2.11 REMARK 500 O HOH A 744 O HOH A 832 2.12 REMARK 500 O HOH A 1236 O HOH A 1313 2.13 REMARK 500 O HOH A 835 O HOH A 883 2.17 REMARK 500 O HOH A 1034 O HOH A 1237 2.17 REMARK 500 O HOH A 946 O HOH A 1043 2.17 REMARK 500 O HOH A 1176 O HOH A 1339 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 624 O HOH A 624 8775 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 231 46.58 -149.85 REMARK 500 ARG A 277 -109.60 50.32 REMARK 500 LYS A 376 -0.30 70.35 REMARK 500 ASP A 407 111.04 -167.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1121 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A1169 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A1189 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A1198 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A1226 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH A1258 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A1269 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A1275 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A1312 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A1322 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A1344 DISTANCE = 7.09 ANGSTROMS REMARK 525 HOH A1375 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH A1381 DISTANCE = 6.04 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 502 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 269 O REMARK 620 2 CYS A 270 O 82.2 REMARK 620 3 SER A 272 OG 87.7 94.7 REMARK 620 4 GLY A 285 O 140.5 73.0 123.9 REMARK 620 5 GLY A 286 O 86.2 112.0 151.4 75.7 REMARK 620 6 HOH A 731 O 116.2 154.9 70.5 98.0 87.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 330 OD1 REMARK 620 2 HOH A 740 O 175.0 REMARK 620 3 HOH A 750 O 92.4 82.6 REMARK 620 4 HOH A 788 O 85.6 93.5 79.2 REMARK 620 5 HOH A 803 O 103.0 82.0 161.6 91.9 REMARK 620 6 HOH A 833 O 97.3 82.0 83.7 162.8 103.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 503 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 339 O REMARK 620 2 HOH A 722 O 90.9 REMARK 620 3 HOH A 738 O 89.3 174.5 REMARK 620 4 HOH A 848 O 124.8 91.8 92.6 REMARK 620 5 HOH A1323 O 93.1 82.6 91.9 141.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 504 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 359 O REMARK 620 2 GLU A 362 O 96.9 REMARK 620 3 PHE A 364 O 89.3 93.3 REMARK 620 4 HOH A1107 O 87.9 175.0 88.0 REMARK 620 5 HOH A1259 O 158.0 104.0 82.6 71.4 REMARK 620 6 HOH A1274 O 83.2 89.6 172.3 89.7 103.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DDK RELATED DB: PDB REMARK 900 RELATED ID: 4WFY RELATED DB: PDB REMARK 900 RELATED ID: 4WFZ RELATED DB: PDB DBREF 4WFX A 1 462 UNP P03313 POLG_CXB3N 1724 2185 SEQADV 4WFX LEU A 232 UNP P03313 PHE 1955 ENGINEERED MUTATION SEQADV 4WFX ILE A 252 UNP P03313 LEU 1975 CONFLICT SEQADV 4WFX VAL A 372 UNP P03313 ALA 2095 VARIANT SEQRES 1 A 462 GLY GLU ILE GLU PHE ILE GLU SER SER LYS ASP ALA GLY SEQRES 2 A 462 PHE PRO VAL ILE ASN THR PRO SER LYS THR LYS LEU GLU SEQRES 3 A 462 PRO SER VAL PHE HIS GLN VAL PHE GLU GLY ASN LYS GLU SEQRES 4 A 462 PRO ALA VAL LEU ARG SER GLY ASP PRO ARG LEU LYS ALA SEQRES 5 A 462 ASN PHE GLU GLU ALA ILE PHE SER LYS TYR ILE GLY ASN SEQRES 6 A 462 VAL ASN THR HIS VAL ASP GLU TYR MET LEU GLU ALA VAL SEQRES 7 A 462 ASP HIS TYR ALA GLY GLN LEU ALA THR LEU ASP ILE SER SEQRES 8 A 462 THR GLU PRO MET LYS LEU GLU ASP ALA VAL TYR GLY THR SEQRES 9 A 462 GLU GLY LEU GLU ALA LEU ASP LEU THR THR SER ALA GLY SEQRES 10 A 462 TYR PRO TYR VAL ALA LEU GLY ILE LYS LYS ARG ASP ILE SEQRES 11 A 462 LEU SER LYS LYS THR LYS ASP LEU THR LYS LEU LYS GLU SEQRES 12 A 462 CYS MET ASP LYS TYR GLY LEU ASN LEU PRO MET VAL THR SEQRES 13 A 462 TYR VAL LYS ASP GLU LEU ARG SER ILE GLU LYS VAL ALA SEQRES 14 A 462 LYS GLY LYS SER ARG LEU ILE GLU ALA SER SER LEU ASN SEQRES 15 A 462 ASP SER VAL ALA MET ARG GLN THR PHE GLY ASN LEU TYR SEQRES 16 A 462 LYS THR PHE HIS LEU ASN PRO GLY VAL VAL THR GLY SER SEQRES 17 A 462 ALA VAL GLY CYS ASP PRO ASP LEU PHE TRP SER LYS ILE SEQRES 18 A 462 PRO VAL MET LEU ASP GLY HIS LEU ILE ALA LEU ASP TYR SEQRES 19 A 462 SER GLY TYR ASP ALA SER LEU SER PRO VAL TRP PHE ALA SEQRES 20 A 462 CYS LEU LYS MET ILE LEU GLU LYS LEU GLY TYR THR HIS SEQRES 21 A 462 LYS GLU THR ASN TYR ILE ASP TYR LEU CYS ASN SER HIS SEQRES 22 A 462 HIS LEU TYR ARG ASP LYS HIS TYR PHE VAL ARG GLY GLY SEQRES 23 A 462 MET PRO SER GLY CYS SER GLY THR SER ILE PHE ASN SER SEQRES 24 A 462 MET ILE ASN ASN ILE ILE ILE ARG THR LEU MET LEU LYS SEQRES 25 A 462 VAL TYR LYS GLY ILE ASP LEU ASP GLN PHE ARG MET ILE SEQRES 26 A 462 ALA TYR GLY ASP ASP VAL ILE ALA SER TYR PRO TRP PRO SEQRES 27 A 462 ILE ASP ALA SER LEU LEU ALA GLU ALA GLY LYS GLY TYR SEQRES 28 A 462 GLY LEU ILE MET THR PRO ALA ASP LYS GLY GLU CYS PHE SEQRES 29 A 462 ASN GLU VAL THR TRP THR ASN VAL THR PHE LEU LYS ARG SEQRES 30 A 462 TYR PHE ARG ALA ASP GLU GLN TYR PRO PHE LEU VAL HIS SEQRES 31 A 462 PRO VAL MET PRO MET LYS ASP ILE HIS GLU SER ILE ARG SEQRES 32 A 462 TRP THR LYS ASP PRO LYS ASN THR GLN ASP HIS VAL ARG SEQRES 33 A 462 SER LEU CYS LEU LEU ALA TRP HIS ASN GLY GLU HIS GLU SEQRES 34 A 462 TYR GLU GLU PHE ILE ARG LYS ILE ARG SER VAL PRO VAL SEQRES 35 A 462 GLY ARG CYS LEU THR LEU PRO ALA PHE SER THR LEU ARG SEQRES 36 A 462 ARG LYS TRP LEU ASP SER PHE HET NA A 501 1 HET NA A 502 1 HET NA A 503 1 HET NA A 504 1 HETNAM NA SODIUM ION FORMUL 2 NA 4(NA 1+) FORMUL 6 HOH *793(H2 O) HELIX 1 AA1 LYS A 10 GLY A 13 5 4 HELIX 2 AA2 ASN A 53 SER A 60 1 8 HELIX 3 AA3 ASP A 71 ALA A 86 1 16 HELIX 4 AA4 THR A 87 ASP A 89 5 3 HELIX 5 AA5 LYS A 96 GLY A 103 1 8 HELIX 6 AA6 PRO A 119 LEU A 123 5 5 HELIX 7 AA7 LYS A 126 LEU A 131 1 6 HELIX 8 AA8 LEU A 138 GLY A 149 1 12 HELIX 9 AA9 SER A 164 LYS A 170 1 7 HELIX 10 AB1 SER A 180 ASN A 201 1 22 HELIX 11 AB2 ASP A 213 LEU A 225 1 13 HELIX 12 AB3 GLY A 236 LEU A 241 1 6 HELIX 13 AB4 SER A 242 LEU A 256 1 15 HELIX 14 AB5 THR A 259 CYS A 270 1 12 HELIX 15 AB6 GLY A 293 TYR A 314 1 22 HELIX 16 AB7 ASP A 318 PHE A 322 5 5 HELIX 17 AB8 ASP A 340 TYR A 351 1 12 HELIX 18 AB9 PRO A 394 ARG A 403 1 10 HELIX 19 AC1 ASP A 407 LYS A 409 5 3 HELIX 20 AC2 ASN A 410 TRP A 423 1 14 HELIX 21 AC3 GLY A 426 ARG A 438 1 13 HELIX 22 AC4 SER A 439 LEU A 446 5 8 HELIX 23 AC5 ALA A 450 PHE A 462 1 13 SHEET 1 AA1 5 GLU A 2 SER A 8 0 SHEET 2 AA1 5 LYS A 279 ARG A 284 -1 O ARG A 284 N GLU A 2 SHEET 3 AA1 5 ASN A 271 TYR A 276 -1 N HIS A 274 O TYR A 281 SHEET 4 AA1 5 MET A 154 VAL A 158 1 N THR A 156 O LEU A 275 SHEET 5 AA1 5 LEU A 175 ALA A 178 -1 O ILE A 176 N TYR A 157 SHEET 1 AA2 2 GLU A 26 PRO A 27 0 SHEET 2 AA2 2 TRP A 404 THR A 405 -1 O THR A 405 N GLU A 26 SHEET 1 AA3 2 GLU A 39 PRO A 40 0 SHEET 2 AA3 2 LEU A 162 ARG A 163 -1 O ARG A 163 N GLU A 39 SHEET 1 AA4 3 HIS A 228 ILE A 230 0 SHEET 2 AA4 3 ASP A 330 TYR A 335 -1 O ALA A 333 N ILE A 230 SHEET 3 AA4 3 ARG A 323 TYR A 327 -1 N TYR A 327 O ASP A 330 SHEET 1 AA5 2 ASP A 233 TYR A 234 0 SHEET 2 AA5 2 MET A 355 THR A 356 -1 O THR A 356 N ASP A 233 SHEET 1 AA6 2 TYR A 378 ALA A 381 0 SHEET 2 AA6 2 VAL A 389 VAL A 392 -1 O HIS A 390 N ARG A 380 LINK O LEU A 269 NA NA A 502 1555 1555 2.46 LINK O CYS A 270 NA NA A 502 1555 1555 2.57 LINK OG SER A 272 NA NA A 502 1555 1555 2.64 LINK O GLY A 285 NA NA A 502 1555 1555 2.42 LINK O GLY A 286 NA NA A 502 1555 1555 2.35 LINK OD1 ASP A 330 NA NA A 501 1555 1555 2.32 LINK O ILE A 339 NA NA A 503 1555 1555 2.19 LINK O ASP A 359 NA NA A 504 1555 1555 2.56 LINK O GLU A 362 NA NA A 504 1555 1555 2.43 LINK O PHE A 364 NA NA A 504 1555 1555 2.48 LINK NA NA A 501 O HOH A 740 1555 1555 2.50 LINK NA NA A 501 O HOH A 750 1555 1555 2.39 LINK NA NA A 501 O HOH A 788 1555 1555 2.43 LINK NA NA A 501 O HOH A 803 1555 1555 2.43 LINK NA NA A 501 O HOH A 833 1555 1555 2.41 LINK NA NA A 502 O HOH A 731 1555 1555 2.34 LINK NA NA A 503 O HOH A 722 1555 1555 2.55 LINK NA NA A 503 O HOH A 738 1555 1555 2.42 LINK NA NA A 503 O HOH A 848 1555 1555 2.53 LINK NA NA A 503 O HOH A1323 1555 1555 2.33 LINK NA NA A 504 O HOH A1107 1555 1555 2.28 LINK NA NA A 504 O HOH A1259 1555 1555 2.77 LINK NA NA A 504 O HOH A1274 1555 1555 2.80 CISPEP 1 TYR A 118 PRO A 119 0 2.86 SITE 1 AC1 7 ASP A 233 ASP A 330 HOH A 740 HOH A 750 SITE 2 AC1 7 HOH A 788 HOH A 803 HOH A 833 SITE 1 AC2 6 LEU A 269 CYS A 270 SER A 272 GLY A 285 SITE 2 AC2 6 GLY A 286 HOH A 731 SITE 1 AC3 5 ILE A 339 HOH A 722 HOH A 738 HOH A 848 SITE 2 AC3 5 HOH A1323 SITE 1 AC4 6 ASP A 359 GLU A 362 PHE A 364 HOH A1107 SITE 2 AC4 6 HOH A1259 HOH A1274 CRYST1 74.360 74.360 288.050 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013448 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013448 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003472 0.00000