HEADER OXIDOREDUCTASE 18-SEP-14 4WGG TITLE STRUCTURE OF THE TERNARY COMPLEX OF A ZINGIBER OFFICINALE DOUBLE BOND TITLE 2 REDUCTASE IN COMPLEX WITH NADP AND CONIFERYL ALDEHYDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DOUBLE BOND REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZINGIBER OFFICINALE; SOURCE 3 ORGANISM_COMMON: GINGER; SOURCE 4 ORGANISM_TAXID: 94328; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PEXP5-CT KEYWDS ROSSMANN FOLD, TWISTED B-BARREL, CURCUMINOID REDUCTASE, PLANT KEYWDS 2 PROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.COLLERY,B.LANGLOIS D'ESTAINTOT,J.BURATTO,T.GRANIER,B.GALLOIS, AUTHOR 2 M.A.WILLIS,Y.SANG,I.J.FLORES-SANCHEZ,D.R.GANG REVDAT 3 10-JAN-24 4WGG 1 REMARK REVDAT 2 12-JUN-19 4WGG 1 AUTHOR JRNL REVDAT 1 30-SEP-15 4WGG 0 JRNL AUTH J.BURATTO,B.LANGLOIS D'ESTAINTOT,T.GRANIER,B.GALLOIS, JRNL AUTH 2 M.A.WILLIS,Y.SANG,I.J.FLORES-SANCHEZ,D.R.GANG JRNL TITL STRUCTURE OF ZINGIBER OFFICINALE DOUBLE BOND REDUCTASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 26690 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1422 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1858 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.3880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5361 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 109 REMARK 3 SOLVENT ATOMS : 332 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.68000 REMARK 3 B22 (A**2) : 0.77000 REMARK 3 B33 (A**2) : -1.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.616 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.324 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.884 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5628 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7646 ; 1.704 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 698 ; 6.833 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 234 ;37.903 ;24.103 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 892 ;16.195 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;14.593 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 838 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4250 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4WGG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203757. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 - 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54180 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26690 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07530 REMARK 200 FOR THE DATA SET : 11.2300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.40900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.490 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4NH4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1500 25%, PCB 100 MM, NAN3 3MM, PH REMARK 280 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.37400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.94100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.94450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.94100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.37400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.94450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A DIMER. THERE ARE 2 BIOLOGICAL REMARK 300 UNITS IN THE ASYMMETRIC UNIT (CHAINS A & B AND CHAINS C & D REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU B 267 REMARK 465 GLU B 268 REMARK 465 LYS B 269 REMARK 465 PRO B 270 REMARK 465 GLU B 271 REMARK 465 HIS B 359 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 7 CG1 CG2 REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 LYS A 26 CD CE NZ REMARK 470 ARG A 39 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 41 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 68 CE NZ REMARK 470 GLU A 71 CG CD OE1 OE2 REMARK 470 VAL A 75 CG1 CG2 REMARK 470 LYS A 101 CE NZ REMARK 470 LYS A 120 CD CE NZ REMARK 470 LYS A 159 CE NZ REMARK 470 LYS A 160 CE NZ REMARK 470 LYS A 253 CE NZ REMARK 470 GLU A 268 CG CD OE1 OE2 REMARK 470 GLU A 300 CG CD OE1 OE2 REMARK 470 GLU A 303 CD OE1 OE2 REMARK 470 ARG A 338 CD NE CZ NH1 NH2 REMARK 470 LYS A 351 CG CD CE NZ REMARK 470 VAL B 7 CG1 CG2 REMARK 470 VAL B 8 CG1 CG2 REMARK 470 GLU B 22 CG CD OE1 OE2 REMARK 470 ARG B 39 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 41 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 44 CD OE1 OE2 REMARK 470 LYS B 68 CG CD CE NZ REMARK 470 GLU B 70 CG CD OE1 OE2 REMARK 470 GLU B 71 CG CD OE1 OE2 REMARK 470 SER B 73 OG REMARK 470 TYR B 74 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 101 CD CE NZ REMARK 470 LYS B 120 CD CE NZ REMARK 470 LYS B 126 CD CE NZ REMARK 470 LYS B 159 CD CE NZ REMARK 470 LYS B 160 CE NZ REMARK 470 LYS B 182 CD CE NZ REMARK 470 PHE B 292 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 310 CG CD CE NZ REMARK 470 LYS B 313 CE NZ REMARK 470 LYS B 351 CD CE NZ REMARK 470 HIS B 355 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2X NAP B 400 O HOH B 547 2.18 REMARK 500 O HOH A 574 O HOH A 579 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 357 CG HIS A 357 CD2 0.063 REMARK 500 HIS B 128 CG HIS B 128 CD2 0.054 REMARK 500 HIS B 357 CG HIS B 357 CD2 0.058 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 157 55.67 35.00 REMARK 500 THR A 203 -65.48 -95.07 REMARK 500 PRO B 25 154.91 -49.99 REMARK 500 LEU B 40 37.87 -94.91 REMARK 500 LYS B 120 69.27 -117.31 REMARK 500 ASP B 154 -70.10 -97.07 REMARK 500 SER B 157 59.29 35.58 REMARK 500 VAL B 238 -57.89 -121.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIY A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 400 DBREF 4WGG A 7 358 PDB 4WGG 4WGG 7 358 DBREF 4WGG B 7 359 PDB 4WGG 4WGG 7 359 SEQRES 1 A 352 VAL VAL VAL VAL ASN LYS GLN VAL LEU LEU LYS HIS PHE SEQRES 2 A 352 ILE PRO GLU GLY ALA PRO LYS GLU THR ASP MET GLU LEU SEQRES 3 A 352 VAL THR THR GLY THR ILE ARG LEU ARG VAL PRO GLU GLY SEQRES 4 A 352 SER ASN ALA VAL LEU LEU LYS ASN LEU TYR LEU SER CYS SEQRES 5 A 352 ASP PRO TYR MET ARG MET ARG MET THR LYS HIS GLU GLU SEQRES 6 A 352 ALA SER TYR VAL ASP ASP PHE VAL PRO GLY ALA PRO ILE SEQRES 7 A 352 THR GLY PHE GLY VAL GLY LYS VAL VAL ASP SER SER HIS SEQRES 8 A 352 PRO ASP PHE LYS THR GLY ASP TYR VAL TRP GLY LEU ILE SEQRES 9 A 352 GLY TRP GLU GLU TYR SER LEU ILE THR LYS PRO GLN GLY SEQRES 10 A 352 LEU PHE LYS ILE HIS HIS THR GLU ILE PRO LEU SER TYR SEQRES 11 A 352 TYR THR GLY ILE LEU GLY MET VAL GLY LEU THR ALA TYR SEQRES 12 A 352 VAL GLY PHE TYR ASP ILE CYS SER PRO LYS LYS GLY GLU SEQRES 13 A 352 ARG VAL PHE VAL SER ALA ALA ALA GLY ALA VAL GLY GLN SEQRES 14 A 352 ILE VAL GLY GLN PHE ALA LYS GLN PHE GLY CYS TYR VAL SEQRES 15 A 352 VAL GLY SER ALA GLY SER ASP GLU LYS VAL ASN LEU LEU SEQRES 16 A 352 LYS THR LYS PHE GLY PHE ASP GLU ALA PHE ASN TYR LYS SEQRES 17 A 352 LYS GLU PRO ASP LEU THR LYS ALA LEU LYS ARG TYR PHE SEQRES 18 A 352 PRO GLU GLY ILE ASP ILE TYR PHE GLU ASN VAL GLY GLY SEQRES 19 A 352 PRO MET LEU GLU ALA VAL LEU HIS ASN MET ARG ILE LYS SEQRES 20 A 352 GLY ARG ILE ALA ALA CYS GLY MET ILE SER GLN TYR ASN SEQRES 21 A 352 LEU GLU LYS PRO GLU GLY VAL HIS ASN LEU PHE LEU ILE SEQRES 22 A 352 VAL GLY LYS ARG ILE ARG LEU GLU GLY PHE LEU VAL PHE SEQRES 23 A 352 ASP HIS TYR GLY SER TYR PRO GLU PHE GLU GLU LYS VAL SEQRES 24 A 352 VAL GLN LEU ILE LYS GLU GLU LYS ILE LYS TYR LEU GLU SEQRES 25 A 352 ASP ILE VAL GLU GLY LEU GLU ASN ALA PRO ALA ALA LEU SEQRES 26 A 352 ILE GLY LEU PHE GLU GLY ARG ASN VAL GLY LYS GLN VAL SEQRES 27 A 352 VAL VAL VAL SER ARG GLU LYS GLY HIS HIS HIS HIS HIS SEQRES 28 A 352 HIS SEQRES 1 B 352 VAL VAL VAL VAL ASN LYS GLN VAL LEU LEU LYS HIS PHE SEQRES 2 B 352 ILE PRO GLU GLY ALA PRO LYS GLU THR ASP MET GLU LEU SEQRES 3 B 352 VAL THR THR GLY THR ILE ARG LEU ARG VAL PRO GLU GLY SEQRES 4 B 352 SER ASN ALA VAL LEU LEU LYS ASN LEU TYR LEU SER CYS SEQRES 5 B 352 ASP PRO TYR MET ARG MET ARG MET THR LYS HIS GLU GLU SEQRES 6 B 352 ALA SER TYR VAL ASP ASP PHE VAL PRO GLY ALA PRO ILE SEQRES 7 B 352 THR GLY PHE GLY VAL GLY LYS VAL VAL ASP SER SER HIS SEQRES 8 B 352 PRO ASP PHE LYS THR GLY ASP TYR VAL TRP GLY LEU ILE SEQRES 9 B 352 GLY TRP GLU GLU TYR SER LEU ILE THR LYS PRO GLN GLY SEQRES 10 B 352 LEU PHE LYS ILE HIS HIS THR GLU ILE PRO LEU SER TYR SEQRES 11 B 352 TYR THR GLY ILE LEU GLY MET VAL GLY LEU THR ALA TYR SEQRES 12 B 352 VAL GLY PHE TYR ASP ILE CYS SER PRO LYS LYS GLY GLU SEQRES 13 B 352 ARG VAL PHE VAL SER ALA ALA ALA GLY ALA VAL GLY GLN SEQRES 14 B 352 ILE VAL GLY GLN PHE ALA LYS GLN PHE GLY CYS TYR VAL SEQRES 15 B 352 VAL GLY SER ALA GLY SER ASP GLU LYS VAL ASN LEU LEU SEQRES 16 B 352 LYS THR LYS PHE GLY PHE ASP GLU ALA PHE ASN TYR LYS SEQRES 17 B 352 LYS GLU PRO ASP LEU THR LYS ALA LEU LYS ARG TYR PHE SEQRES 18 B 352 PRO GLU GLY ILE ASP ILE TYR PHE GLU ASN VAL GLY GLY SEQRES 19 B 352 PRO MET LEU GLU ALA VAL LEU HIS ASN MET ARG ILE LYS SEQRES 20 B 352 GLY ARG ILE ALA ALA CYS GLY MET ILE SER GLN TYR ASN SEQRES 21 B 352 LEU GLU LYS PRO GLU GLY VAL HIS ASN LEU PHE LEU ILE SEQRES 22 B 352 VAL GLY LYS ARG ILE ARG LEU GLU GLY PHE LEU VAL PHE SEQRES 23 B 352 ASP HIS TYR GLY SER TYR PRO GLU PHE GLU GLU LYS VAL SEQRES 24 B 352 VAL GLN LEU ILE LYS GLU GLU LYS ILE LYS TYR LEU GLU SEQRES 25 B 352 ASP ILE VAL GLU GLY LEU GLU ASN ALA PRO ALA ALA LEU SEQRES 26 B 352 ILE GLY LEU PHE GLU GLY ARG ASN VAL GLY LYS GLN VAL SEQRES 27 B 352 VAL VAL VAL SER ARG GLU LYS GLY HIS HIS HIS HIS HIS SEQRES 28 B 352 HIS HET NAP A 400 48 HET CIY A 401 13 HET NAP B 400 48 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM CIY (2E)-3-(4-HYDROXY-3-METHOXYPHENYL)PROP-2-ENAL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN CIY CONIFERALDEHYDE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 CIY C10 H10 O3 FORMUL 6 HOH *332(H2 O) HELIX 1 AA1 LYS A 26 THR A 28 5 3 HELIX 2 AA2 ASP A 59 THR A 67 5 9 HELIX 3 AA3 LYS A 120 GLN A 122 5 3 HELIX 4 AA4 PRO A 133 THR A 138 5 6 HELIX 5 AA5 GLY A 142 ASP A 154 1 13 HELIX 6 AA6 GLY A 171 GLY A 185 1 15 HELIX 7 AA7 SER A 194 LYS A 204 1 11 HELIX 8 AA8 LYS A 214 GLU A 216 5 3 HELIX 9 AA9 ASP A 218 PHE A 227 1 10 HELIX 10 AB1 GLY A 240 ASN A 249 1 10 HELIX 11 AB2 MET A 261 TYR A 265 5 5 HELIX 12 AB3 PHE A 277 LYS A 282 1 6 HELIX 13 AB4 LEU A 290 GLY A 296 5 7 HELIX 14 AB5 SER A 297 GLU A 311 1 15 HELIX 15 AB6 ASN A 326 PHE A 335 1 10 HELIX 16 AB7 LYS B 26 THR B 28 5 3 HELIX 17 AB8 ASP B 59 THR B 67 5 9 HELIX 18 AB9 LYS B 120 GLN B 122 5 3 HELIX 19 AC1 PRO B 133 THR B 138 5 6 HELIX 20 AC2 GLY B 142 ASP B 154 1 13 HELIX 21 AC3 GLY B 171 PHE B 184 1 14 HELIX 22 AC4 SER B 194 THR B 203 1 10 HELIX 23 AC5 LYS B 214 GLU B 216 5 3 HELIX 24 AC6 ASP B 218 PHE B 227 1 10 HELIX 25 AC7 GLY B 240 ASN B 249 1 10 HELIX 26 AC8 MET B 261 TYR B 265 5 5 HELIX 27 AC9 PHE B 277 LYS B 282 1 6 HELIX 28 AD1 LEU B 290 GLY B 296 5 7 HELIX 29 AD2 SER B 297 GLU B 312 1 16 HELIX 30 AD3 ASN B 326 GLU B 336 1 11 SHEET 1 AA1 2 VAL A 8 VAL A 10 0 SHEET 2 AA1 2 THR A 37 ARG A 39 -1 O ILE A 38 N VAL A 9 SHEET 1 AA2 2 GLN A 13 LEU A 16 0 SHEET 2 AA2 2 MET A 30 VAL A 33 -1 O VAL A 33 N GLN A 13 SHEET 1 AA3 5 TYR A 115 ILE A 118 0 SHEET 2 AA3 5 VAL A 49 SER A 57 -1 N VAL A 49 O ILE A 118 SHEET 3 AA3 5 THR A 85 SER A 95 -1 O PHE A 87 N SER A 57 SHEET 4 AA3 5 TYR A 105 GLY A 111 -1 O ILE A 110 N GLY A 86 SHEET 5 AA3 5 LEU A 124 LYS A 126 -1 O PHE A 125 N TRP A 107 SHEET 1 AA4 4 TYR A 115 ILE A 118 0 SHEET 2 AA4 4 VAL A 49 SER A 57 -1 N VAL A 49 O ILE A 118 SHEET 3 AA4 4 LYS A 342 VAL A 346 -1 O VAL A 345 N LEU A 56 SHEET 4 AA4 4 GLU A 318 GLU A 322 1 N ASP A 319 O VAL A 344 SHEET 1 AA512 GLU A 209 ASN A 212 0 SHEET 2 AA512 TYR A 187 ALA A 192 1 N GLY A 190 O PHE A 211 SHEET 3 AA512 ARG A 163 SER A 167 1 N VAL A 164 O TYR A 187 SHEET 4 AA512 ILE A 231 GLU A 236 1 O ILE A 233 N PHE A 165 SHEET 5 AA512 MET A 250 ALA A 258 1 O ARG A 251 N ILE A 231 SHEET 6 AA512 ARG A 285 GLY A 288 1 O GLU A 287 N ILE A 256 SHEET 7 AA512 ARG B 285 GLY B 288 -1 O LEU B 286 N LEU A 286 SHEET 8 AA512 MET B 250 ALA B 258 1 N ILE B 256 O ARG B 285 SHEET 9 AA512 ILE B 231 GLU B 236 1 N ILE B 231 O ARG B 251 SHEET 10 AA512 ARG B 163 VAL B 166 1 N PHE B 165 O PHE B 235 SHEET 11 AA512 TYR B 187 ALA B 192 1 O TYR B 187 N VAL B 164 SHEET 12 AA512 GLU B 209 ASN B 212 1 O PHE B 211 N ALA B 192 SHEET 1 AA6 2 VAL B 8 VAL B 10 0 SHEET 2 AA6 2 THR B 37 ARG B 39 -1 O ILE B 38 N VAL B 9 SHEET 1 AA7 2 GLN B 13 LEU B 16 0 SHEET 2 AA7 2 MET B 30 VAL B 33 -1 O VAL B 33 N GLN B 13 SHEET 1 AA8 5 TYR B 115 ILE B 118 0 SHEET 2 AA8 5 VAL B 49 SER B 57 -1 N VAL B 49 O ILE B 118 SHEET 3 AA8 5 THR B 85 SER B 95 -1 O VAL B 89 N TYR B 55 SHEET 4 AA8 5 TYR B 105 GLY B 111 -1 O VAL B 106 N GLY B 90 SHEET 5 AA8 5 LEU B 124 LYS B 126 -1 O PHE B 125 N TRP B 107 SHEET 1 AA9 4 TYR B 115 ILE B 118 0 SHEET 2 AA9 4 VAL B 49 SER B 57 -1 N VAL B 49 O ILE B 118 SHEET 3 AA9 4 LYS B 342 VAL B 346 -1 O VAL B 345 N LEU B 56 SHEET 4 AA9 4 GLU B 318 GLU B 322 1 N ASP B 319 O VAL B 344 SITE 1 AC1 32 PRO A 60 MET A 143 THR A 147 GLY A 171 SITE 2 AC1 32 ALA A 172 VAL A 173 ALA A 192 GLY A 193 SITE 3 AC1 32 LYS A 197 TYR A 213 ASN A 237 CYS A 259 SITE 4 AC1 32 GLY A 260 ILE A 262 SER A 263 TYR A 265 SITE 5 AC1 32 PHE A 289 LEU A 290 VAL A 291 LEU A 334 SITE 6 AC1 32 PHE A 335 GLY A 337 ASN A 339 CIY A 401 SITE 7 AC1 32 HOH A 537 HOH A 542 HOH A 552 HOH A 553 SITE 8 AC1 32 HOH A 571 HOH A 585 HOH A 612 HOH A 614 SITE 1 AC2 10 TYR A 61 MET A 64 TYR A 74 TYR A 265 SITE 2 AC2 10 LEU A 290 VAL A 291 PHE A 292 NAP A 400 SITE 3 AC2 10 HOH A 611 PHE B 277 SITE 1 AC3 29 PRO B 60 MET B 143 THR B 147 ALA B 168 SITE 2 AC3 29 GLY B 171 ALA B 172 VAL B 173 ALA B 192 SITE 3 AC3 29 GLY B 193 LYS B 197 TYR B 213 ASN B 237 SITE 4 AC3 29 CYS B 259 GLY B 260 ILE B 262 TYR B 265 SITE 5 AC3 29 PHE B 289 LEU B 290 VAL B 291 PHE B 335 SITE 6 AC3 29 GLY B 337 ASN B 339 HOH B 547 HOH B 549 SITE 7 AC3 29 HOH B 550 HOH B 559 HOH B 599 HOH B 606 SITE 8 AC3 29 HOH B 607 CRYST1 60.748 77.889 155.882 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016461 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012839 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006415 0.00000