HEADER APOPTOSIS/INHIBITOR 18-SEP-14 4WGI
TITLE A SINGLE DIASTEREOMER OF A MACROLACTAM CORE BINDS SPECIFICALLY TO
TITLE 2 MYELOID CELL LEUKEMIA 1 (MCL1)
CAVEAT 4WGI RESIDUE (A ALA 201 ) AND RESIDUE (A GLY 203 ) ARE LINKED
CAVEAT 2 4WGI TOGETHER
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: MALTOSE-BINDING PERIPLASMIC PROTEIN,INDUCED MYELOID
COMPND 3 LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL-1;
COMPND 4 CHAIN: A;
COMPND 5 FRAGMENT: UNP RESIDUES 27-392,UNP RESIDUES 173-291;
COMPND 6 SYNONYM: MBP,MMBP,MALTODEXTRIN-BINDING PROTEIN,BCL-2-LIKE PROTEIN 3,
COMPND 7 BCL2-L-3,BCL-2-RELATED PROTEIN EAT/MCL1,MCL1/EAT;
COMPND 8 ENGINEERED: YES;
COMPND 9 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7, HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 83334, 9606;
SOURCE 5 GENE: MALE, Z5632, ECS5017, MCL1, BCL2L3;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS FUSION PROTEIN, MBP, TRANSPORT PROTEIN, TRANSPORT PROTEIN-INHIBITOR
KEYWDS 2 COMPLEX, APOPTOSIS-INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR M.C.CLIFTON,J.W.FAIRMAN,C.FANG,B.D'SOUZA,B.FULROTH,A.LEED,P.MCCARREN,
AUTHOR 2 L.WANG,Y.WANG,V.KAUSHIK,M.PALMER,G.WEI,T.R.GOLUB,B.K.HUBBARD,
AUTHOR 3 M.H.SERRANO-WU
REVDAT 4 27-SEP-23 4WGI 1 HETSYN
REVDAT 3 29-JUL-20 4WGI 1 COMPND SOURCE REMARK HET
REVDAT 3 2 1 HETNAM FORMUL LINK SITE
REVDAT 3 3 1 ATOM
REVDAT 2 31-DEC-14 4WGI 1 JRNL
REVDAT 1 19-NOV-14 4WGI 0
JRNL AUTH C.FANG,B.D'SOUZA,C.F.THOMPSON,M.C.CLIFTON,J.W.FAIRMAN,
JRNL AUTH 2 B.FULROTH,A.LEED,P.MCCARREN,L.WANG,Y.WANG,C.FEAU,
JRNL AUTH 3 V.K.KAUSHIK,M.PALMER,G.WEI,T.R.GOLUB,B.K.HUBBARD,
JRNL AUTH 4 M.H.SERRANO-WU
JRNL TITL SINGLE DIASTEREOMER OF A MACROLACTAM CORE BINDS SPECIFICALLY
JRNL TITL 2 TO MYELOID CELL LEUKEMIA 1 (MCL1).
JRNL REF ACS MED.CHEM.LETT. V. 5 1308 2014
JRNL REFN ISSN 1948-5875
JRNL PMID 25516789
JRNL DOI 10.1021/ML500388Q
REMARK 2
REMARK 2 RESOLUTION. 1.85 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1675)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.21
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7
REMARK 3 NUMBER OF REFLECTIONS : 44462
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.179
REMARK 3 R VALUE (WORKING SET) : 0.177
REMARK 3 FREE R VALUE : 0.213
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870
REMARK 3 FREE R VALUE TEST SET COUNT : 2167
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 41.2167 - 4.5606 1.00 3046 166 0.1657 0.1740
REMARK 3 2 4.5606 - 3.6206 1.00 2915 135 0.1475 0.1955
REMARK 3 3 3.6206 - 3.1631 1.00 2870 122 0.1618 0.1862
REMARK 3 4 3.1631 - 2.8740 1.00 2826 156 0.1761 0.1948
REMARK 3 5 2.8740 - 2.6680 0.99 2810 143 0.1790 0.2240
REMARK 3 6 2.6680 - 2.5107 0.99 2797 134 0.1700 0.2245
REMARK 3 7 2.5107 - 2.3850 0.99 2796 149 0.1771 0.2152
REMARK 3 8 2.3850 - 2.2812 0.99 2797 160 0.1788 0.2200
REMARK 3 9 2.2812 - 2.1934 0.99 2747 150 0.1874 0.2189
REMARK 3 10 2.1934 - 2.1177 0.99 2774 145 0.1916 0.2578
REMARK 3 11 2.1177 - 2.0515 1.00 2780 158 0.2068 0.2288
REMARK 3 12 2.0515 - 1.9929 1.00 2766 145 0.2033 0.2452
REMARK 3 13 1.9929 - 1.9404 1.00 2790 139 0.2082 0.2825
REMARK 3 14 1.9404 - 1.8931 1.00 2760 126 0.2411 0.3032
REMARK 3 15 1.8931 - 1.8500 1.00 2821 139 0.2668 0.2921
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.670
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 19.76
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.40
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.004 4109
REMARK 3 ANGLE : 0.876 5588
REMARK 3 CHIRALITY : 0.031 623
REMARK 3 PLANARITY : 0.004 721
REMARK 3 DIHEDRAL : 12.852 1454
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 4
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID -196 THROUGH 137 )
REMARK 3 ORIGIN FOR THE GROUP (A): 10.2443 19.6352 52.4550
REMARK 3 T TENSOR
REMARK 3 T11: 0.1761 T22: 0.1378
REMARK 3 T33: 0.1523 T12: 0.0175
REMARK 3 T13: 0.0580 T23: 0.0061
REMARK 3 L TENSOR
REMARK 3 L11: 0.9301 L22: 0.7866
REMARK 3 L33: 0.3295 L12: -0.7503
REMARK 3 L13: 0.2010 L23: 0.0070
REMARK 3 S TENSOR
REMARK 3 S11: -0.1204 S12: -0.1094 S13: -0.1473
REMARK 3 S21: 0.1692 S22: 0.0893 S23: 0.1685
REMARK 3 S31: 0.0067 S32: -0.0761 S33: 0.0165
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 172 )
REMARK 3 ORIGIN FOR THE GROUP (A): 25.7053 31.7200 45.8017
REMARK 3 T TENSOR
REMARK 3 T11: 0.1259 T22: 0.1135
REMARK 3 T33: 0.1333 T12: -0.0078
REMARK 3 T13: 0.0093 T23: -0.0035
REMARK 3 L TENSOR
REMARK 3 L11: 2.1874 L22: 2.1190
REMARK 3 L33: 1.3227 L12: -0.6205
REMARK 3 L13: -0.0021 L23: -0.0556
REMARK 3 S TENSOR
REMARK 3 S11: -0.0588 S12: 0.1196 S13: 0.1394
REMARK 3 S21: 0.1208 S22: -0.0110 S23: 0.0349
REMARK 3 S31: 0.0032 S32: -0.0555 S33: -0.0055
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 173 THROUGH 253 )
REMARK 3 ORIGIN FOR THE GROUP (A): 16.5024 57.5165 47.7644
REMARK 3 T TENSOR
REMARK 3 T11: 0.1327 T22: 0.1364
REMARK 3 T33: 0.1180 T12: 0.0002
REMARK 3 T13: -0.0194 T23: 0.0069
REMARK 3 L TENSOR
REMARK 3 L11: 1.1675 L22: 2.2619
REMARK 3 L33: 1.1020 L12: -0.1548
REMARK 3 L13: -0.9111 L23: -0.1006
REMARK 3 S TENSOR
REMARK 3 S11: -0.0095 S12: -0.0147 S13: -0.0544
REMARK 3 S21: -0.0301 S22: 0.0542 S23: 0.1479
REMARK 3 S31: 0.0155 S32: -0.0823 S33: -0.0056
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 254 THROUGH 321 )
REMARK 3 ORIGIN FOR THE GROUP (A): 17.9840 53.5131 44.2115
REMARK 3 T TENSOR
REMARK 3 T11: 0.1402 T22: 0.1322
REMARK 3 T33: 0.1021 T12: 0.0142
REMARK 3 T13: 0.0027 T23: 0.0102
REMARK 3 L TENSOR
REMARK 3 L11: 2.0819 L22: 2.1865
REMARK 3 L33: 1.1465 L12: -1.0727
REMARK 3 L13: 0.0139 L23: -0.2973
REMARK 3 S TENSOR
REMARK 3 S11: 0.0171 S12: 0.0489 S13: -0.0708
REMARK 3 S21: -0.2223 S22: -0.0130 S23: 0.0291
REMARK 3 S31: 0.0878 S32: -0.0712 S33: 0.0326
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4WGI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-14.
REMARK 100 THE DEPOSITION ID IS D_1000203778.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 24-APR-14
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : ROTATING ANODE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.54
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44522
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7
REMARK 200 DATA REDUNDANCY : 4.400
REMARK 200 R MERGE (I) : 0.06200
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.2000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : 0.50800
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.120
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: NULL
REMARK 200 STARTING MODEL: 3WIX
REMARK 200
REMARK 200 REMARK: RODS
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 44.55
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML MBP-MCL1 VCID 9272, 200MM MG
REMARK 280 FORMATE, 20% PEG3350, 0.5M BRD-0611, 1MM MALTOSE, CRYOPROTECTANT
REMARK 280 20% ETHYLENE GLYCOL, PH 7, VAPOR DIFFUSION, SITTING DROP,
REMARK 280 TEMPERATURE 298K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -X+1/2,Y+1/2,-Z
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 49.65000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.93500
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.65000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 67.93500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ASN A -23
REMARK 465 GLY A -22
REMARK 465 LYS A -21
REMARK 465 TYR A -20
REMARK 465 SER A 202
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A-171 CG CD CE NZ
REMARK 470 LYS A-170 CG CD CE NZ
REMARK 470 LYS A-167 CG CD CE NZ
REMARK 470 LYS A-162 CG CD CE NZ
REMARK 470 LYS A-154 CG CD CE NZ
REMARK 470 TYR A -25 CG CD1 CD2 CE1 CE2 CZ OH
REMARK 470 GLU A -24 CG CD OE1 OE2
REMARK 470 LYS A -17 CG CD CE NZ
REMARK 470 LYS A 6 CG CD CE NZ
REMARK 470 LYS A 99 CG CD CE NZ
REMARK 470 GLU A 113 CG CD OE1 OE2
REMARK 470 GLU A 114 CG CD OE1 OE2
REMARK 470 GLN A 129 CG CD OE1 NE2
REMARK 470 ARG A 233 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 234 CG CD CE NZ
REMARK 470 LYS A 238 CG CD CE NZ
REMARK 470 LYS A 244 CG CD CE NZ
REMARK 470 SER A 247 OG
REMARK 470 ARG A 248 CG CD NE CZ NH1 NH2
REMARK 470 ILE A 251 CG1 CG2 CD1
REMARK 470 ASP A 256 CG OD1 OD2
REMARK 470 VAL A 258 CG1 CG2
REMARK 470 ARG A 300 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 308 CG CD CE NZ
REMARK 470 VAL A 321 CG1 CG2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH A 667 O HOH A 883 2.16
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A-141 -168.80 -125.30
REMARK 500 ALA A -28 -91.75 -82.81
REMARK 500 ASP A 13 -166.19 -119.97
REMARK 500 TYR A 87 -56.45 -124.05
REMARK 500 VAL A 258 84.02 57.11
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 898 DISTANCE = 5.94 ANGSTROMS
REMARK 525 HOH A 972 DISTANCE = 5.97 ANGSTROMS
REMARK 525 HOH A 982 DISTANCE = 5.97 ANGSTROMS
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 403 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 167 OD1
REMARK 620 2 FMT A 411 O2 82.9
REMARK 620 3 HOH A 539 O 82.7 96.3
REMARK 620 4 HOH A 548 O 87.2 166.9 90.9
REMARK 620 5 HOH A 555 O 174.9 100.1 101.0 89.2
REMARK 620 6 HOH A 557 O 85.3 89.9 165.6 80.7 90.6
REMARK 620 N 1 2 3 4 5
DBREF 4WGI A -195 170 UNP P0AEY0 MALE_ECO57 27 392
DBREF 4WGI A 173 321 UNP Q07820 MCL1_HUMAN 173 321
SEQADV 4WGI GLY A -196 UNP P0AEY0 EXPRESSION TAG
SEQADV 4WGI GLY A 171 UNP P0AEY0 LINKER
SEQADV 4WGI SER A 172 UNP P0AEY0 LINKER
SEQADV 4WGI ALA A 194 UNP Q07820 LYS 194 ENGINEERED MUTATION
SEQADV 4WGI ALA A 197 UNP Q07820 LYS 197 ENGINEERED MUTATION
SEQADV 4WGI ALA A 201 UNP Q07820 ARG 201 ENGINEERED MUTATION
SEQRES 1 A 518 GLY LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN
SEQRES 2 A 518 GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS
SEQRES 3 A 518 LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU
SEQRES 4 A 518 HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA
SEQRES 5 A 518 ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS
SEQRES 6 A 518 ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA
SEQRES 7 A 518 GLU ILE THR PRO ASP LYS ALA PHE GLN ASP LYS LEU TYR
SEQRES 8 A 518 PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU
SEQRES 9 A 518 ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE
SEQRES 10 A 518 TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP
SEQRES 11 A 518 GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS
SEQRES 12 A 518 GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR
SEQRES 13 A 518 PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA
SEQRES 14 A 518 PHE LYS TYR GLU ASN GLY LYS TYR ASP ILE LYS ASP VAL
SEQRES 15 A 518 GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE
SEQRES 16 A 518 LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP
SEQRES 17 A 518 THR ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY
SEQRES 18 A 518 GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER
SEQRES 19 A 518 ASN ILE ASP THR SER LYS VAL ASN TYR GLY VAL THR VAL
SEQRES 20 A 518 LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL
SEQRES 21 A 518 GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN
SEQRES 22 A 518 LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU
SEQRES 23 A 518 THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO
SEQRES 24 A 518 LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU
SEQRES 25 A 518 ALA LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA
SEQRES 26 A 518 GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER
SEQRES 27 A 518 ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA
SEQRES 28 A 518 ALA SER GLY ARG GLN THR VAL ASP GLU ALA LEU LYS ASP
SEQRES 29 A 518 ALA GLN THR GLY SER GLU LEU TYR ARG GLN SER LEU GLU
SEQRES 30 A 518 ILE ILE SER ARG TYR LEU ARG GLU GLN ALA THR GLY ALA
SEQRES 31 A 518 ALA ASP THR ALA PRO MET GLY ALA SER GLY ALA THR SER
SEQRES 32 A 518 ARG LYS ALA LEU GLU THR LEU ARG ARG VAL GLY ASP GLY
SEQRES 33 A 518 VAL GLN ARG ASN HIS GLU THR ALA PHE GLN GLY MET LEU
SEQRES 34 A 518 ARG LYS LEU ASP ILE LYS ASN GLU ASP ASP VAL LYS SER
SEQRES 35 A 518 LEU SER ARG VAL MET ILE HIS VAL PHE SER ASP GLY VAL
SEQRES 36 A 518 THR ASN TRP GLY ARG ILE VAL THR LEU ILE SER PHE GLY
SEQRES 37 A 518 ALA PHE VAL ALA LYS HIS LEU LYS THR ILE ASN GLN GLU
SEQRES 38 A 518 SER CYS ILE GLU PRO LEU ALA GLU SER ILE THR ASP VAL
SEQRES 39 A 518 LEU VAL ARG THR LYS ARG ASP TRP LEU VAL LYS GLN ARG
SEQRES 40 A 518 GLY TRP ASP GLY PHE VAL GLU PHE PHE HIS VAL
HET GLC B 1 12
HET GLC B 2 11
HET 3M6 A 402 46
HET MG A 403 1
HET FMT A 404 3
HET FMT A 405 3
HET FMT A 406 3
HET FMT A 407 3
HET FMT A 408 3
HET FMT A 409 3
HET FMT A 410 3
HET FMT A 411 3
HET FMT A 412 3
HET FMT A 413 3
HETNAM GLC ALPHA-D-GLUCOPYRANOSE
HETNAM 3M6 (2S)-2-[(2S,3R)-10-{[(4-FLUOROPHENYL)SULFONYL]AMINO}-3-
HETNAM 2 3M6 METHYL-2-[(METHYL{[4-(TRIFLUOROMETHYL)
HETNAM 3 3M6 PHENYL]CARBAMOYL}AMINO)METHYL]-6-OXO-3,4-DIHYDRO-2H-1,
HETNAM 4 3M6 5-BENZOXAZOCIN-5(6H)-YL]PROPANOIC ACID
HETNAM MG MAGNESIUM ION
HETNAM FMT FORMIC ACID
HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE
FORMUL 2 GLC 2(C6 H12 O6)
FORMUL 3 3M6 C30 H30 F4 N4 O7 S
FORMUL 4 MG MG 2+
FORMUL 5 FMT 10(C H2 O2)
FORMUL 15 HOH *483(H2 O)
HELIX 1 AA1 GLY A -180 GLY A -164 1 17
HELIX 2 AA2 LYS A -154 ALA A -144 1 11
HELIX 3 AA3 ARG A -130 SER A -123 1 8
HELIX 4 AA4 ASP A -114 ASP A -109 1 6
HELIX 5 AA5 TYR A -106 VAL A -99 1 8
HELIX 6 AA6 THR A -68 GLU A -66 5 3
HELIX 7 AA7 GLU A -65 ALA A -55 1 11
HELIX 8 AA8 GLU A -43 PHE A -40 5 4
HELIX 9 AA9 THR A -39 ASP A -32 1 8
HELIX 10 AB1 ASN A -11 ASN A 5 1 17
HELIX 11 AB2 ASP A 13 LYS A 23 1 11
HELIX 12 AB3 GLY A 32 TRP A 34 5 3
HELIX 13 AB4 ALA A 35 LYS A 43 1 9
HELIX 14 AB5 ASN A 76 TYR A 87 1 12
HELIX 15 AB6 THR A 90 LYS A 99 1 10
HELIX 16 AB7 LEU A 108 ALA A 116 1 9
HELIX 17 AB8 ASP A 118 GLY A 131 1 14
HELIX 18 AB9 GLN A 139 SER A 156 1 18
HELIX 19 AC1 THR A 160 GLY A 192 1 33
HELIX 20 AC2 GLY A 203 LEU A 235 1 33
HELIX 21 AC3 ASN A 239 PHE A 254 1 16
HELIX 22 AC4 ASN A 260 ILE A 281 1 22
HELIX 23 AC5 GLN A 283 SER A 285 5 3
HELIX 24 AC6 CYS A 286 LYS A 302 1 17
HELIX 25 AC7 LYS A 302 GLN A 309 1 8
HELIX 26 AC8 GLY A 311 PHE A 319 1 9
SHEET 1 AA1 6 VAL A-161 GLU A-158 0
SHEET 2 AA1 6 LEU A-189 TRP A-186 1 N ILE A-187 O THR A-160
SHEET 3 AA1 6 ILE A-137 ALA A-133 1 O ILE A-137 N TRP A-186
SHEET 4 AA1 6 PHE A 62 ILE A 70 -1 O GLY A 69 N ILE A-136
SHEET 5 AA1 6 TYR A -90 GLU A -85 -1 N GLU A -85 O GLY A 64
SHEET 6 AA1 6 ALA A 105 VAL A 106 -1 O ALA A 105 N VAL A -86
SHEET 1 AA2 5 VAL A-161 GLU A-158 0
SHEET 2 AA2 5 LEU A-189 TRP A-186 1 N ILE A-187 O THR A-160
SHEET 3 AA2 5 ILE A-137 ALA A-133 1 O ILE A-137 N TRP A-186
SHEET 4 AA2 5 PHE A 62 ILE A 70 -1 O GLY A 69 N ILE A-136
SHEET 5 AA2 5 GLU A 132 ILE A 133 1 O GLU A 132 N VAL A 63
SHEET 1 AA3 2 ARG A -98 TYR A -97 0
SHEET 2 AA3 2 LYS A -94 LEU A -93 -1 O LYS A -94 N TYR A -97
SHEET 1 AA4 4 SER A -51 LEU A -49 0
SHEET 2 AA4 4 THR A 26 ASN A 31 1 O ALA A 27 N SER A -51
SHEET 3 AA4 4 SER A -82 ASN A -78 -1 N ASN A -78 O ALA A 27
SHEET 4 AA4 4 TYR A 46 THR A 49 -1 O THR A 49 N LEU A -81
SHEET 1 AA5 2 TYR A -29 PHE A -27 0
SHEET 2 AA5 2 VAL A -15 GLY A -14 -1 O GLY A -14 N TYR A -29
LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.41
LINK OD1 ASP A 167 MG MG A 403 1555 1555 2.16
LINK MG MG A 403 O2 FMT A 411 1555 1555 2.08
LINK MG MG A 403 O HOH A 539 1555 1555 2.06
LINK MG MG A 403 O HOH A 548 1555 1555 2.10
LINK MG MG A 403 O HOH A 555 1555 4557 2.06
LINK MG MG A 403 O HOH A 557 1555 1555 2.21
CISPEP 1 ALA A 201 GLY A 203 0 -1.34
CISPEP 2 GLY A 257 VAL A 258 0 3.90
CRYST1 99.300 135.870 37.690 90.00 90.00 90.00 P 21 21 2 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010070 0.000000 0.000000 0.00000
SCALE2 0.000000 0.007360 0.000000 0.00000
SCALE3 0.000000 0.000000 0.026532 0.00000