HEADER TRANSFERASE 19-SEP-14 4WH2 TITLE N-ACETYLHEXOSAMINE 1-KINASE IN COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLHEXOSAMINE 1-KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: N-ACETYLGALACTOSAMINE/N-ACETYLGLUCOSAMINE 1-KINASE; COMPND 5 EC: 2.7.1.162; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BIFIDOBACTERIUM LONGUM SUBSP. LONGUM JCM 1217; SOURCE 3 ORGANISM_TAXID: 565042; SOURCE 4 ATCC: 15707; SOURCE 5 GENE: NAHK, LNPB, BLLJ_1622; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODONPLUS(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30 KEYWDS NAHK, ANOMERIC KINASE, APH, OPEN CONFORMATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SATO,T.ARAKAWA,Y.W.NAM,M.NISHIMOTO,M.KITAOKA,S.FUSHINOBU REVDAT 4 20-MAR-24 4WH2 1 REMARK LINK REVDAT 3 05-FEB-20 4WH2 1 SOURCE JRNL REMARK REVDAT 2 25-FEB-15 4WH2 1 JRNL REVDAT 1 18-FEB-15 4WH2 0 JRNL AUTH M.SATO,T.ARAKAWA,Y.W.NAM,M.NISHIMOTO,M.KITAOKA,S.FUSHINOBU JRNL TITL OPEN-CLOSE STRUCTURAL CHANGE UPON LIGAND BINDING AND TWO JRNL TITL 2 MAGNESIUM IONS REQUIRED FOR THE CATALYSIS OF JRNL TITL 3 N-ACETYLHEXOSAMINE 1-KINASE JRNL REF BIOCHIM.BIOPHYS.ACTA V.1854 333 2015 JRNL REFN ISSN 0006-3002 JRNL PMID 25644306 JRNL DOI 10.1016/J.BBAPAP.2015.01.011 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.NISHIMOTO,M.KITAOKA REMARK 1 TITL IDENTIFICATION OF N-ACETYLHEXOSAMINE 1-KINASE IN THE REMARK 1 TITL 2 COMPLETE LACTO-N-BIOSE I/GALACTO-N-BIOSE METABOLIC PATHWAY REMARK 1 TITL 3 IN BIFIDOBACTERIUM LONGUM. REMARK 1 REF APPL. ENVIRON. MICROBIOL. V. 73 6444 2007 REMARK 1 REFN ISSN 0099-2240 REMARK 1 PMID 17720833 REMARK 1 DOI 10.1128/AEM.01425-07 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 35960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.560 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4123 - 4.4492 0.98 2565 150 0.1728 0.2142 REMARK 3 2 4.4492 - 3.5319 1.00 2497 148 0.1674 0.2152 REMARK 3 3 3.5319 - 3.0856 1.00 2482 146 0.1929 0.2433 REMARK 3 4 3.0856 - 2.8035 1.00 2465 145 0.2026 0.2127 REMARK 3 5 2.8035 - 2.6026 1.00 2406 142 0.1981 0.2371 REMARK 3 6 2.6026 - 2.4492 1.00 2438 143 0.2035 0.2979 REMARK 3 7 2.4492 - 2.3265 1.00 2446 144 0.2051 0.2741 REMARK 3 8 2.3265 - 2.2252 1.00 2418 142 0.2072 0.2528 REMARK 3 9 2.2252 - 2.1396 1.00 2429 142 0.2071 0.2742 REMARK 3 10 2.1396 - 2.0657 1.00 2395 140 0.2174 0.2491 REMARK 3 11 2.0657 - 2.0011 1.00 2396 142 0.2144 0.2874 REMARK 3 12 2.0011 - 1.9439 1.00 2420 143 0.2342 0.2887 REMARK 3 13 1.9439 - 1.8928 1.00 2409 141 0.2486 0.2999 REMARK 3 14 1.8928 - 1.8466 0.91 2196 130 0.2452 0.2984 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2884 REMARK 3 ANGLE : 1.016 3910 REMARK 3 CHIRALITY : 0.069 437 REMARK 3 PLANARITY : 0.004 510 REMARK 3 DIHEDRAL : 14.176 1034 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WH2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000203799. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36058 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.847 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.50700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, MAGNESIUM ACETATE, SODIUM REMARK 280 CACODYLATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.03950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.94750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.11000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.94750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.03950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.11000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 SER A 4 REMARK 465 LEU A 360 REMARK 465 GLU A 361 REMARK 465 HIS A 362 REMARK 465 HIS A 363 REMARK 465 HIS A 364 REMARK 465 HIS A 365 REMARK 465 HIS A 366 REMARK 465 HIS A 367 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 51.66 -112.53 REMARK 500 THR A 79 -169.72 -160.22 REMARK 500 ASP A 166 54.75 36.94 REMARK 500 ASN A 207 -1.48 80.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 792 DISTANCE = 5.99 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 213 OD1 REMARK 620 2 ASP A 228 OD2 90.6 REMARK 620 3 ADP A 401 O1B 178.5 88.7 REMARK 620 4 ADP A 401 O1A 95.5 94.4 85.9 REMARK 620 5 HOH A 547 O 80.8 170.7 99.8 90.0 REMARK 620 6 HOH A 548 O 94.4 91.9 84.3 168.2 85.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 228 OD1 REMARK 620 2 ASP A 228 OD2 59.7 REMARK 620 3 ADP A 401 O2B 91.9 92.2 REMARK 620 4 HOH A 549 O 94.1 88.5 173.4 REMARK 620 5 HOH A 550 O 153.4 93.9 92.4 81.0 REMARK 620 6 HOH A 551 O 101.4 161.0 90.1 91.3 104.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OCJ RELATED DB: PDB REMARK 900 4OCJ CONTAINS THE SAME PROTEIN COMPLEXED WITH GLCNAC. REMARK 900 RELATED ID: 4OCK RELATED DB: PDB REMARK 900 4OCK CONTAINS THE SAME PROTEIN COMPLEXED WITH GLCNAC AND AMPPNP. REMARK 900 RELATED ID: 4OCO RELATED DB: PDB REMARK 900 4OCO CONTAINS THE SAME PROTEIN COMPLEXED WITH GLCNAC-1-PHOSPHATE. REMARK 900 RELATED ID: 4OCP RELATED DB: PDB REMARK 900 4OCP CONTAINS THE SAME PROTEIN COMPLEXED WITH GLCNAC-1-PHOSPHATE REMARK 900 AND ADP. REMARK 900 RELATED ID: 4OCQ RELATED DB: PDB REMARK 900 4OCQ CONTAINS THE SAME PROTEIN COMPLEXED WITH GALNAC. REMARK 900 RELATED ID: 4OCU RELATED DB: PDB REMARK 900 4OCU IS THE SAME PROTEIN BUT FROM DIFFERENT STRAIN. REMARK 900 RELATED ID: 4OCV RELATED DB: PDB REMARK 900 4OCV IS THE SAME PROTEIN BUT FROM DIFFERENT STRAIN. REMARK 900 RELATED ID: 4WH1 RELATED DB: PDB REMARK 900 RELATED ID: 4WH2 RELATED DB: PDB DBREF 4WH2 A 1 359 UNP E8MF12 NAHK_BIFL2 1 359 SEQADV 4WH2 VAL A 7 UNP E8MF12 ASP 7 ENGINEERED MUTATION SEQADV 4WH2 LEU A 360 UNP E8MF12 EXPRESSION TAG SEQADV 4WH2 GLU A 361 UNP E8MF12 EXPRESSION TAG SEQADV 4WH2 HIS A 362 UNP E8MF12 EXPRESSION TAG SEQADV 4WH2 HIS A 363 UNP E8MF12 EXPRESSION TAG SEQADV 4WH2 HIS A 364 UNP E8MF12 EXPRESSION TAG SEQADV 4WH2 HIS A 365 UNP E8MF12 EXPRESSION TAG SEQADV 4WH2 HIS A 366 UNP E8MF12 EXPRESSION TAG SEQADV 4WH2 HIS A 367 UNP E8MF12 EXPRESSION TAG SEQRES 1 A 367 MET THR GLU SER ASN GLU VAL LEU PHE GLY ILE ALA SER SEQRES 2 A 367 HIS PHE ALA LEU GLU GLY ALA VAL THR GLY ILE GLU PRO SEQRES 3 A 367 TYR GLY ASP GLY HIS ILE ASN THR THR TYR LEU VAL THR SEQRES 4 A 367 THR ASP GLY PRO ARG TYR ILE LEU GLN GLN MET ASN THR SEQRES 5 A 367 SER ILE PHE PRO ASP THR VAL ASN LEU MET ARG ASN VAL SEQRES 6 A 367 GLU LEU VAL THR SER THR LEU LYS ALA GLN GLY LYS GLU SEQRES 7 A 367 THR LEU ASP ILE VAL PRO THR THR SER GLY ALA THR TRP SEQRES 8 A 367 ALA GLU ILE ASP GLY GLY ALA TRP ARG VAL TYR LYS PHE SEQRES 9 A 367 ILE GLU HIS THR VAL SER TYR ASN LEU VAL PRO ASN PRO SEQRES 10 A 367 ASP VAL PHE ARG GLU ALA GLY SER ALA PHE GLY ASP PHE SEQRES 11 A 367 GLN ASN PHE LEU SER GLU PHE ASP ALA SER GLN LEU THR SEQRES 12 A 367 GLU THR ILE ALA HIS PHE HIS ASP THR PRO HIS ARG PHE SEQRES 13 A 367 GLU ASP PHE LYS ALA ALA LEU ALA ALA ASP LYS LEU GLY SEQRES 14 A 367 ARG ALA ALA ALA CYS GLN PRO GLU ILE ASP PHE TYR LEU SEQRES 15 A 367 SER HIS ALA ASP GLN TYR ALA VAL VAL MET ASP GLY LEU SEQRES 16 A 367 ARG ASP GLY SER ILE PRO LEU ARG VAL THR HIS ASN ASP SEQRES 17 A 367 THR LYS LEU ASN ASN ILE LEU MET ASP ALA THR THR GLY SEQRES 18 A 367 LYS ALA ARG ALA ILE ILE ASP LEU ASP THR ILE MET PRO SEQRES 19 A 367 GLY SER MET LEU PHE ASP PHE GLY ASP SER ILE ARG PHE SEQRES 20 A 367 GLY ALA SER THR ALA LEU GLU ASP GLU LYS ASP LEU SER SEQRES 21 A 367 LYS VAL HIS PHE SER THR GLU LEU PHE ARG ALA TYR THR SEQRES 22 A 367 GLU GLY PHE VAL GLY GLU LEU ARG GLY SER ILE THR ALA SEQRES 23 A 367 ARG GLU ALA GLU LEU LEU PRO PHE SER GLY ASN LEU LEU SEQRES 24 A 367 THR MET GLU CYS GLY MET ARG PHE LEU ALA ASP TYR LEU SEQRES 25 A 367 GLU GLY ASP ILE TYR PHE ALA THR LYS TYR PRO GLU HIS SEQRES 26 A 367 ASN LEU VAL ARG THR ARG THR GLN ILE LYS LEU VAL GLN SEQRES 27 A 367 GLU MET GLU GLN LYS ALA SER GLU THR ARG ALA ILE VAL SEQRES 28 A 367 ALA ASP ILE MET GLU ALA ALA ARG LEU GLU HIS HIS HIS SEQRES 29 A 367 HIS HIS HIS HET ADP A 401 27 HET MG A 402 1 HET MG A 403 1 HET ACY A 404 4 HET ACY A 405 7 HET ACY A 406 7 HET ACY A 407 7 HET ACY A 408 7 HET GOL A 409 6 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM ACY ACETIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG 2(MG 2+) FORMUL 5 ACY 5(C2 H4 O2) FORMUL 10 GOL C3 H8 O3 FORMUL 11 HOH *313(H2 O) HELIX 1 AA1 ASN A 5 SER A 13 1 9 HELIX 2 AA2 ASP A 57 GLN A 75 1 19 HELIX 3 AA3 ASN A 116 LEU A 134 1 19 HELIX 4 AA4 ASP A 138 LEU A 142 5 5 HELIX 5 AA5 ASP A 151 ASP A 166 1 16 HELIX 6 AA6 ARG A 170 ALA A 173 5 4 HELIX 7 AA7 CYS A 174 HIS A 184 1 11 HELIX 8 AA8 ALA A 185 TYR A 188 5 4 HELIX 9 AA9 ALA A 189 GLY A 198 1 10 HELIX 10 AB1 LYS A 210 ASN A 212 5 3 HELIX 11 AB2 SER A 236 ALA A 249 1 14 HELIX 12 AB3 ASP A 258 VAL A 262 5 5 HELIX 13 AB4 SER A 265 ARG A 281 1 17 HELIX 14 AB5 THR A 285 GLU A 313 1 29 HELIX 15 AB6 GLU A 324 LYS A 343 1 20 HELIX 16 AB7 LYS A 343 ARG A 359 1 17 SHEET 1 AA1 5 VAL A 21 PRO A 26 0 SHEET 2 AA1 5 THR A 34 THR A 40 -1 O LEU A 37 N GLU A 25 SHEET 3 AA1 5 ARG A 44 GLN A 49 -1 O TYR A 45 N VAL A 38 SHEET 4 AA1 5 ALA A 98 LYS A 103 -1 O TYR A 102 N ILE A 46 SHEET 5 AA1 5 ILE A 82 VAL A 83 -1 N VAL A 83 O VAL A 101 SHEET 1 AA2 5 VAL A 21 PRO A 26 0 SHEET 2 AA2 5 THR A 34 THR A 40 -1 O LEU A 37 N GLU A 25 SHEET 3 AA2 5 ARG A 44 GLN A 49 -1 O TYR A 45 N VAL A 38 SHEET 4 AA2 5 ALA A 98 LYS A 103 -1 O TYR A 102 N ILE A 46 SHEET 5 AA2 5 ALA A 92 GLU A 93 -1 N ALA A 92 O TRP A 99 SHEET 1 AA3 3 THR A 108 VAL A 109 0 SHEET 2 AA3 3 ILE A 214 ASP A 217 -1 O MET A 216 N VAL A 109 SHEET 3 AA3 3 ALA A 223 ILE A 226 -1 O ARG A 224 N LEU A 215 SHEET 1 AA4 2 ARG A 203 THR A 205 0 SHEET 2 AA4 2 MET A 233 GLY A 235 -1 O GLY A 235 N ARG A 203 LINK OD1 ASN A 213 MG MG A 402 1555 1555 2.20 LINK OD2 ASP A 228 MG MG A 402 1555 1555 2.11 LINK OD1 ASP A 228 MG MG A 403 1555 1555 2.26 LINK OD2 ASP A 228 MG MG A 403 1555 1555 2.16 LINK O1B ADP A 401 MG MG A 402 1555 1555 2.14 LINK O1A ADP A 401 MG MG A 402 1555 1555 2.01 LINK O2B ADP A 401 MG MG A 403 1555 1555 2.01 LINK MG MG A 402 O HOH A 547 1555 1555 2.00 LINK MG MG A 402 O HOH A 548 1555 1555 2.07 LINK MG MG A 403 O HOH A 549 1555 1555 2.06 LINK MG MG A 403 O HOH A 550 1555 1555 1.99 LINK MG MG A 403 O HOH A 551 1555 1555 2.03 SITE 1 AC1 27 GLY A 30 HIS A 31 ILE A 32 ASN A 33 SITE 2 AC1 27 ILE A 46 GLN A 48 LEU A 80 TYR A 102 SITE 3 AC1 27 LYS A 103 PHE A 104 ILE A 105 ASN A 212 SITE 4 AC1 27 ASN A 213 ILE A 227 ASP A 228 MG A 402 SITE 5 AC1 27 MG A 403 HOH A 547 HOH A 548 HOH A 550 SITE 6 AC1 27 HOH A 551 HOH A 571 HOH A 605 HOH A 618 SITE 7 AC1 27 HOH A 647 HOH A 669 HOH A 695 SITE 1 AC2 5 ASN A 213 ASP A 228 ADP A 401 HOH A 547 SITE 2 AC2 5 HOH A 548 SITE 1 AC3 5 ASP A 228 ADP A 401 HOH A 549 HOH A 550 SITE 2 AC3 5 HOH A 551 SITE 1 AC4 5 PHE A 149 ARG A 306 TYR A 317 HOH A 579 SITE 2 AC4 5 HOH A 644 SITE 1 AC5 3 GLN A 338 HOH A 502 HOH A 515 SITE 1 AC6 4 GLU A 254 ASP A 255 HIS A 325 ARG A 329 SITE 1 AC7 4 GLU A 78 ARG A 224 LYS A 335 GLN A 342 SITE 1 AC8 4 SER A 140 GLN A 141 ALA A 165 HOH A 528 SITE 1 AC9 9 ILE A 54 PHE A 55 THR A 231 HOH A 549 SITE 2 AC9 9 HOH A 551 HOH A 575 HOH A 616 HOH A 644 SITE 3 AC9 9 HOH A 712 CRYST1 44.079 88.220 105.895 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022687 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011335 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009443 0.00000