HEADER TRANSCRIPTION 22-SEP-14 4WHF TITLE CRYSTAL STRUCTURE OF TR3 LBD IN COMPLEX WITH 1-(3,4,5- TITLE 2 TRIHYDROXYPHENYL)DECAN-1-ONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR RECEPTOR SUBFAMILY 4 GROUP A MEMBER 1; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN, UNP RESIDUES 351-598; COMPND 5 SYNONYM: EARLY RESPONSE PROTEIN NAK1,NUCLEAR HORMONE RECEPTOR NUR/77, COMPND 6 NUR77,ORPHAN NUCLEAR RECEPTOR HMR,ORPHAN NUCLEAR RECEPTOR TR3,ST-59, COMPND 7 TESTICULAR RECEPTOR 3; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR4A1, GFRP1, HMR, NAK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS LBD, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR F.W.LI,Q.X.CAI,A.Z.LI,X.Y.TIAN,W.J.WANG,Y.WANG,P.P.HOU,Q.WU,T.W.LIN REVDAT 3 20-MAR-24 4WHF 1 REMARK REVDAT 2 14-OCT-15 4WHF 1 LINK REVDAT 1 09-SEP-15 4WHF 0 JRNL AUTH W.J.WANG,Y.WANG,P.P.HOU,F.W.LI,B.ZHOU,H.Z.CHEN,X.L.BIAN, JRNL AUTH 2 Q.X.CAI,Y.Z.XING,J.P.HE,H.ZHANG,P.Q.HUANG,T.LIN,Q.WU JRNL TITL INDUCTION OF AUTOPHAGIC DEATH IN CANCER CELLS BY AGONIZING JRNL TITL 2 TR3 AND ATTENUATING AKT2 ACTIVITY JRNL REF CHEM.BIOL. V. 22 1040 2015 JRNL REFN ISSN 1074-5521 JRNL PMID 26235054 JRNL DOI 10.1016/J.CHEMBIOL.2015.06.023 REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 84.0 REMARK 3 NUMBER OF REFLECTIONS : 27719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1422 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.27 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1806 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3616 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.27000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : -1.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.297 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.244 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.166 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.776 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3735 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3723 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5045 ; 1.798 ; 2.010 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8572 ; 1.439 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 455 ; 5.268 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;37.527 ;23.247 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 653 ;18.979 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;20.839 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 585 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4066 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 812 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1835 ; 3.268 ; 3.812 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1834 ; 3.264 ; 3.810 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2285 ; 4.724 ; 5.683 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2286 ; 4.723 ; 5.685 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1900 ; 4.036 ; 4.187 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1901 ; 4.035 ; 4.187 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2761 ; 6.057 ; 6.135 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 16377 ; 9.053 ;36.084 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 16378 ; 9.053 ;36.084 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 B 31 267 A 31 267 12791 0.20 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4WHF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203831. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, HKL REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29178 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.8 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, SODIUM CITRATE, GLYCEROL, PH REMARK 280 4.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.18900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.33200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.22000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.33200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.18900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.22000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A MONOMER. THERE ARE 2 BIOLOGICAL REMARK 300 UNITS IN THE ASYMMETRIC UNIT (CHAINS A AND CHAINS B). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 19 REMARK 465 SER B 20 REMARK 465 LYS B 21 REMARK 465 PRO B 22 REMARK 465 LYS B 23 REMARK 465 GLN B 24 REMARK 465 PRO B 25 REMARK 465 PRO B 26 REMARK 465 ASP B 27 REMARK 465 ALA B 28 REMARK 465 SER B 29 REMARK 465 HIS B 63 REMARK 465 PHE B 64 REMARK 465 GLY B 65 REMARK 465 ALA B 212 REMARK 465 GLY B 213 REMARK 465 GLU B 214 REMARK 465 PRO B 215 REMARK 465 GLN B 216 REMARK 465 PRO B 217 REMARK 465 LEU B 268 REMARK 465 GLU B 269 REMARK 465 HIS B 270 REMARK 465 HIS B 271 REMARK 465 HIS B 272 REMARK 465 HIS B 273 REMARK 465 HIS B 274 REMARK 465 HIS B 275 REMARK 465 MET A 19 REMARK 465 SER A 20 REMARK 465 LYS A 21 REMARK 465 PRO A 22 REMARK 465 LYS A 23 REMARK 465 GLN A 24 REMARK 465 PRO A 25 REMARK 465 PRO A 26 REMARK 465 ASP A 27 REMARK 465 ALA A 28 REMARK 465 SER A 29 REMARK 465 PRO A 30 REMARK 465 GLU A 214 REMARK 465 PRO A 215 REMARK 465 GLN A 216 REMARK 465 PRO A 217 REMARK 465 ALA A 218 REMARK 465 SER A 219 REMARK 465 LEU A 268 REMARK 465 GLU A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 HIS A 274 REMARK 465 HIS A 275 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 260 OG1 THR A 264 1.03 REMARK 500 OE1 GLU B 67 OE2 GLU B 248 1.08 REMARK 500 OE1 GLU B 67 CD GLU B 248 1.28 REMARK 500 NH2 ARG B 160 O HOH B 401 1.29 REMARK 500 CD GLU B 67 OE2 GLU B 248 1.33 REMARK 500 OE1 GLU B 67 OE1 GLU B 248 1.50 REMARK 500 CB PRO B 30 CB ALA B 31 1.53 REMARK 500 OE2 GLU B 67 OE2 GLU B 248 1.54 REMARK 500 OE2 GLU B 84 NZ LYS B 88 1.67 REMARK 500 OE2 GLU B 84 CE LYS B 88 1.84 REMARK 500 OG1 THR A 182 O10 3MX A 302 2.00 REMARK 500 OE2 GLU A 67 O HOH A 401 2.10 REMARK 500 C ILE A 260 OG1 THR A 264 2.15 REMARK 500 OG SER B 161 NZ LYS B 227 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD GLU B 98 O GLU A 98 2455 1.19 REMARK 500 CG GLU B 98 O GLU A 98 2455 1.42 REMARK 500 OE2 GLU B 98 C LEU A 99 2455 1.46 REMARK 500 CD GLU B 98 C GLU A 98 2455 1.63 REMARK 500 OE2 GLU B 98 O LEU A 99 2455 1.64 REMARK 500 OE2 GLU B 98 O GLU A 98 2455 1.69 REMARK 500 OE2 GLU B 98 CA LEU A 99 2455 1.81 REMARK 500 OE2 GLU B 98 C GLU A 98 2455 1.88 REMARK 500 OE1 GLU B 98 C GLU A 98 2455 1.88 REMARK 500 OE2 GLU B 98 N LEU A 99 2455 1.96 REMARK 500 OE1 GLU B 98 CA GLU A 98 2455 1.99 REMARK 500 OE1 GLU B 98 O GLU A 98 2455 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 98 CG GLU B 98 CD 0.116 REMARK 500 SER B 176 CB SER B 176 OG -0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 83 CA - CB - CG ANGL. DEV. = 25.3 DEGREES REMARK 500 LEU B 83 CB - CG - CD1 ANGL. DEV. = -16.8 DEGREES REMARK 500 GLU B 98 OE1 - CD - OE2 ANGL. DEV. = -8.5 DEGREES REMARK 500 ARG A 123 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 123 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 31 -129.82 109.35 REMARK 500 GLU B 67 134.60 -20.86 REMARK 500 LEU B 166 71.31 49.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 475 DISTANCE = 6.11 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3MX A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WHG RELATED DB: PDB REMARK 900 RELATED ID: 4RE8 RELATED DB: PDB REMARK 900 RELATED ID: 4REE RELATED DB: PDB REMARK 900 RELATED ID: 4REF RELATED DB: PDB DBREF 4WHF B 20 267 UNP P22736 NR4A1_HUMAN 351 598 DBREF 4WHF A 20 267 UNP P22736 NR4A1_HUMAN 351 598 SEQADV 4WHF MET B 19 UNP P22736 INITIATING METHIONINE SEQADV 4WHF LEU B 268 UNP P22736 EXPRESSION TAG SEQADV 4WHF GLU B 269 UNP P22736 EXPRESSION TAG SEQADV 4WHF HIS B 270 UNP P22736 EXPRESSION TAG SEQADV 4WHF HIS B 271 UNP P22736 EXPRESSION TAG SEQADV 4WHF HIS B 272 UNP P22736 EXPRESSION TAG SEQADV 4WHF HIS B 273 UNP P22736 EXPRESSION TAG SEQADV 4WHF HIS B 274 UNP P22736 EXPRESSION TAG SEQADV 4WHF HIS B 275 UNP P22736 EXPRESSION TAG SEQADV 4WHF MET A 19 UNP P22736 INITIATING METHIONINE SEQADV 4WHF LEU A 268 UNP P22736 EXPRESSION TAG SEQADV 4WHF GLU A 269 UNP P22736 EXPRESSION TAG SEQADV 4WHF HIS A 270 UNP P22736 EXPRESSION TAG SEQADV 4WHF HIS A 271 UNP P22736 EXPRESSION TAG SEQADV 4WHF HIS A 272 UNP P22736 EXPRESSION TAG SEQADV 4WHF HIS A 273 UNP P22736 EXPRESSION TAG SEQADV 4WHF HIS A 274 UNP P22736 EXPRESSION TAG SEQADV 4WHF HIS A 275 UNP P22736 EXPRESSION TAG SEQRES 1 B 257 MET SER LYS PRO LYS GLN PRO PRO ASP ALA SER PRO ALA SEQRES 2 B 257 ASN LEU LEU THR SER LEU VAL ARG ALA HIS LEU ASP SER SEQRES 3 B 257 GLY PRO SER THR ALA LYS LEU ASP TYR SER LYS PHE GLN SEQRES 4 B 257 GLU LEU VAL LEU PRO HIS PHE GLY LYS GLU ASP ALA GLY SEQRES 5 B 257 ASP VAL GLN GLN PHE TYR ASP LEU LEU SER GLY SER LEU SEQRES 6 B 257 GLU VAL ILE ARG LYS TRP ALA GLU LYS ILE PRO GLY PHE SEQRES 7 B 257 ALA GLU LEU SER PRO ALA ASP GLN ASP LEU LEU LEU GLU SEQRES 8 B 257 SER ALA PHE LEU GLU LEU PHE ILE LEU ARG LEU ALA TYR SEQRES 9 B 257 ARG SER LYS PRO GLY GLU GLY LYS LEU ILE PHE CYS SER SEQRES 10 B 257 GLY LEU VAL LEU HIS ARG LEU GLN CYS ALA ARG GLY PHE SEQRES 11 B 257 GLY ASP TRP ILE ASP SER ILE LEU ALA PHE SER ARG SER SEQRES 12 B 257 LEU HIS SER LEU LEU VAL ASP VAL PRO ALA PHE ALA CYS SEQRES 13 B 257 LEU SER ALA LEU VAL LEU ILE THR ASP ARG HIS GLY LEU SEQRES 14 B 257 GLN GLU PRO ARG ARG VAL GLU GLU LEU GLN ASN ARG ILE SEQRES 15 B 257 ALA SER CYS LEU LYS GLU HIS VAL ALA ALA VAL ALA GLY SEQRES 16 B 257 GLU PRO GLN PRO ALA SER CYS LEU SER ARG LEU LEU GLY SEQRES 17 B 257 LYS LEU PRO GLU LEU ARG THR LEU CYS THR GLN GLY LEU SEQRES 18 B 257 GLN ARG ILE PHE TYR LEU LYS LEU GLU ASP LEU VAL PRO SEQRES 19 B 257 PRO PRO PRO ILE ILE ASP LYS ILE PHE MET ASP THR LEU SEQRES 20 B 257 PRO PHE LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 A 257 MET SER LYS PRO LYS GLN PRO PRO ASP ALA SER PRO ALA SEQRES 2 A 257 ASN LEU LEU THR SER LEU VAL ARG ALA HIS LEU ASP SER SEQRES 3 A 257 GLY PRO SER THR ALA LYS LEU ASP TYR SER LYS PHE GLN SEQRES 4 A 257 GLU LEU VAL LEU PRO HIS PHE GLY LYS GLU ASP ALA GLY SEQRES 5 A 257 ASP VAL GLN GLN PHE TYR ASP LEU LEU SER GLY SER LEU SEQRES 6 A 257 GLU VAL ILE ARG LYS TRP ALA GLU LYS ILE PRO GLY PHE SEQRES 7 A 257 ALA GLU LEU SER PRO ALA ASP GLN ASP LEU LEU LEU GLU SEQRES 8 A 257 SER ALA PHE LEU GLU LEU PHE ILE LEU ARG LEU ALA TYR SEQRES 9 A 257 ARG SER LYS PRO GLY GLU GLY LYS LEU ILE PHE CYS SER SEQRES 10 A 257 GLY LEU VAL LEU HIS ARG LEU GLN CYS ALA ARG GLY PHE SEQRES 11 A 257 GLY ASP TRP ILE ASP SER ILE LEU ALA PHE SER ARG SER SEQRES 12 A 257 LEU HIS SER LEU LEU VAL ASP VAL PRO ALA PHE ALA CYS SEQRES 13 A 257 LEU SER ALA LEU VAL LEU ILE THR ASP ARG HIS GLY LEU SEQRES 14 A 257 GLN GLU PRO ARG ARG VAL GLU GLU LEU GLN ASN ARG ILE SEQRES 15 A 257 ALA SER CYS LEU LYS GLU HIS VAL ALA ALA VAL ALA GLY SEQRES 16 A 257 GLU PRO GLN PRO ALA SER CYS LEU SER ARG LEU LEU GLY SEQRES 17 A 257 LYS LEU PRO GLU LEU ARG THR LEU CYS THR GLN GLY LEU SEQRES 18 A 257 GLN ARG ILE PHE TYR LEU LYS LEU GLU ASP LEU VAL PRO SEQRES 19 A 257 PRO PRO PRO ILE ILE ASP LYS ILE PHE MET ASP THR LEU SEQRES 20 A 257 PRO PHE LEU GLU HIS HIS HIS HIS HIS HIS HET GOL B 301 6 HET GOL A 301 6 HET 3MX A 302 20 HET GOL A 303 6 HET GOL A 304 6 HET GOL A 305 6 HETNAM GOL GLYCEROL HETNAM 3MX 1-(3,4,5-TRIHYDROXYPHENYL)DECAN-1-ONE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 5(C3 H8 O3) FORMUL 5 3MX C16 H24 O4 FORMUL 9 HOH *190(H2 O) HELIX 1 AA1 ALA B 31 SER B 44 1 14 HELIX 2 AA2 SER B 47 LEU B 51 5 5 HELIX 3 AA3 ASP B 68 GLU B 91 1 24 HELIX 4 AA4 GLY B 95 LEU B 99 5 5 HELIX 5 AA5 SER B 100 SER B 124 1 25 HELIX 6 AA6 LYS B 125 GLU B 128 5 4 HELIX 7 AA7 ARG B 141 GLY B 149 1 9 HELIX 8 AA8 ASP B 150 LEU B 165 1 16 HELIX 9 AA9 ASP B 168 ILE B 181 1 14 HELIX 10 AB1 GLU B 189 VAL B 211 1 23 HELIX 11 AB2 SER B 219 GLY B 226 1 8 HELIX 12 AB3 GLY B 226 ASP B 249 1 24 HELIX 13 AB4 PRO B 254 LEU B 265 1 12 HELIX 14 AB5 ASN A 32 SER A 44 1 13 HELIX 15 AB6 SER A 47 LEU A 51 5 5 HELIX 16 AB7 ASP A 68 LYS A 92 1 25 HELIX 17 AB8 GLY A 95 LEU A 99 5 5 HELIX 18 AB9 SER A 100 SER A 124 1 25 HELIX 19 AC1 LYS A 125 GLU A 128 5 4 HELIX 20 AC2 ARG A 141 GLY A 149 1 9 HELIX 21 AC3 ASP A 150 LEU A 165 1 16 HELIX 22 AC4 ASP A 168 ILE A 181 1 14 HELIX 23 AC5 GLU A 189 GLY A 213 1 25 HELIX 24 AC6 LEU A 221 GLY A 226 1 6 HELIX 25 AC7 LYS A 227 ASP A 249 1 23 HELIX 26 AC8 PRO A 254 LEU A 265 1 12 SHEET 1 AA1 2 LYS B 130 ILE B 132 0 SHEET 2 AA1 2 VAL B 138 HIS B 140 -1 O LEU B 139 N LEU B 131 SHEET 1 AA2 2 LYS A 130 ILE A 132 0 SHEET 2 AA2 2 VAL A 138 HIS A 140 -1 O LEU A 139 N LEU A 131 CISPEP 1 PRO B 30 ALA B 31 0 -6.95 CISPEP 2 LEU B 61 PRO B 62 0 7.64 SITE 1 AC1 8 HIS B 41 SER B 44 GLY B 45 PRO B 46 SITE 2 AC1 8 ARG B 119 ARG B 123 HOH B 425 HOH B 442 SITE 1 AC2 8 HIS A 41 SER A 44 GLY A 45 ARG A 119 SITE 2 AC2 8 ARG A 123 HOH A 413 HOH A 429 HOH A 463 SITE 1 AC3 10 LEU A 162 LEU A 165 LEU A 175 LEU A 178 SITE 2 AC3 10 VAL A 179 THR A 182 GLN A 197 LEU A 224 SITE 3 AC3 10 LEU A 225 ARG A 232 SITE 1 AC4 4 ASP A 153 ARG A 191 GLU A 194 GLU A 195 SITE 1 AC5 7 GLY A 95 ARG A 192 GLU A 195 LEU A 196 SITE 2 AC5 7 ARG A 199 GLU B 189 ARG B 192 SITE 1 AC6 10 GLU A 109 SER A 110 ALA A 111 PHE A 112 SITE 2 AC6 10 LEU A 113 GLU A 114 ILE A 260 THR A 264 SITE 3 AC6 10 HOH A 402 HOH A 424 CRYST1 74.378 76.440 128.664 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013445 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013082 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007772 0.00000