HEADER IMMUNE SYSTEM 25-SEP-14 4WI5 TITLE STRUCTURAL MAPPING OF THE HUMAN IGG1 BINDING SITE FOR FCRN: HU3S193 FC TITLE 2 MUTATION H310A COMPND MOL_ID: 1; COMPND 2 MOLECULE: IG GAMMA-1 CHAIN C REGION; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 120-327; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IGHG1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: 293F KEYWDS HUMAN IGG1, FCRN BINDING SITE, THERAPEUTIC ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR W.FARRUGIA,I.J.G.BURVENICH,A.M.SCOTT,P.A.RAMSLAND REVDAT 5 27-DEC-23 4WI5 1 HETSYN LINK REVDAT 4 29-JUL-20 4WI5 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 08-JAN-20 4WI5 1 REMARK REVDAT 2 13-SEP-17 4WI5 1 REMARK REVDAT 1 30-SEP-15 4WI5 0 JRNL AUTH I.J.G.BURVENICH,W.FARRUGIA,F.T.LEE,B.CATIMEL,Z.LIU,D.MAKRIS, JRNL AUTH 2 D.CAO,G.O'KEEFE,M.W.BRECHBIEL,D.KING,V.SPIRKOSKA,L.ALLAN, JRNL AUTH 3 P.A.RAMSLAND,A.M.SCOTT JRNL TITL STRUCTURAL AND FUNCTIONAL MAPPING OF HUMAN IGG1 BINDING SITE JRNL TITL 2 FOR FCRN IN VIVO USING HUMAN FCRN TRANSGENIC MICE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 12980 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.301 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1300 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 5.8112 0.98 1417 159 0.2129 0.2828 REMARK 3 2 5.8112 - 4.6182 0.99 1354 149 0.1922 0.2532 REMARK 3 3 4.6182 - 4.0360 0.99 1316 148 0.1759 0.2379 REMARK 3 4 4.0360 - 3.6678 0.98 1309 146 0.2099 0.3291 REMARK 3 5 3.6678 - 3.4053 0.98 1297 144 0.2362 0.3034 REMARK 3 6 3.4053 - 3.2047 0.98 1285 143 0.2714 0.3557 REMARK 3 7 3.2047 - 3.0444 0.95 1249 138 0.3267 0.4381 REMARK 3 8 3.0444 - 2.9120 0.94 1239 138 0.0000 0.4040 REMARK 3 9 2.9120 - 2.8000 0.93 1214 135 0.0000 0.4379 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 85.01 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -18.39150 REMARK 3 B22 (A**2) : -6.36400 REMARK 3 B33 (A**2) : 24.75540 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3635 REMARK 3 ANGLE : 1.945 4966 REMARK 3 CHIRALITY : 0.107 592 REMARK 3 PLANARITY : 0.008 606 REMARK 3 DIHEDRAL : 29.255 1437 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 237:325) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9149 -13.9101 11.3120 REMARK 3 T TENSOR REMARK 3 T11: 0.7985 T22: 0.5803 REMARK 3 T33: 0.9707 T12: -0.3747 REMARK 3 T13: 0.0752 T23: -0.3406 REMARK 3 L TENSOR REMARK 3 L11: 2.7605 L22: 4.6470 REMARK 3 L33: 1.7891 L12: -0.4223 REMARK 3 L13: -1.0046 L23: -0.3984 REMARK 3 S TENSOR REMARK 3 S11: -0.6443 S12: 0.9136 S13: -0.3308 REMARK 3 S21: -1.5186 S22: -0.0067 S23: 0.1787 REMARK 3 S31: 0.1349 S32: -0.4084 S33: -0.2622 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 326:346) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2333 -3.5936 15.6028 REMARK 3 T TENSOR REMARK 3 T11: 0.6317 T22: 0.5777 REMARK 3 T33: 1.3051 T12: -0.2941 REMARK 3 T13: -0.1244 T23: -0.1702 REMARK 3 L TENSOR REMARK 3 L11: 0.8424 L22: 3.0785 REMARK 3 L33: 1.7903 L12: 0.3114 REMARK 3 L13: -0.4516 L23: -0.4384 REMARK 3 S TENSOR REMARK 3 S11: -0.5730 S12: 0.1825 S13: 0.0741 REMARK 3 S21: -0.9475 S22: 0.1123 S23: 0.4051 REMARK 3 S31: 0.1088 S32: -0.2991 S33: 0.7363 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 347:444) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4088 -7.9419 40.8759 REMARK 3 T TENSOR REMARK 3 T11: 0.2841 T22: 0.4331 REMARK 3 T33: 0.6073 T12: 0.0571 REMARK 3 T13: -0.0127 T23: 0.1100 REMARK 3 L TENSOR REMARK 3 L11: 5.4003 L22: 5.1064 REMARK 3 L33: 4.3028 L12: -0.6524 REMARK 3 L13: -0.5366 L23: 0.9620 REMARK 3 S TENSOR REMARK 3 S11: 0.0968 S12: -1.0944 S13: -1.2398 REMARK 3 S21: 0.9260 S22: 0.0142 S23: 0.2677 REMARK 3 S31: 0.2462 S32: -0.1909 S33: -0.0471 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 237:336) REMARK 3 ORIGIN FOR THE GROUP (A): -33.1161 11.8879 7.3506 REMARK 3 T TENSOR REMARK 3 T11: 1.1183 T22: 0.3723 REMARK 3 T33: 0.3336 T12: -0.0714 REMARK 3 T13: -0.0940 T23: 0.1635 REMARK 3 L TENSOR REMARK 3 L11: 1.9197 L22: 1.8244 REMARK 3 L33: 2.7864 L12: -0.3953 REMARK 3 L13: 0.6007 L23: -0.8336 REMARK 3 S TENSOR REMARK 3 S11: -0.0303 S12: 0.7484 S13: 0.0912 REMARK 3 S21: -1.4313 S22: -0.1464 S23: -0.2724 REMARK 3 S31: 0.2860 S32: 0.3410 S33: 0.0573 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 337:444) REMARK 3 ORIGIN FOR THE GROUP (A): -30.1699 6.4294 38.5795 REMARK 3 T TENSOR REMARK 3 T11: 0.2267 T22: 0.2968 REMARK 3 T33: 0.2565 T12: 0.0070 REMARK 3 T13: 0.0137 T23: -0.1766 REMARK 3 L TENSOR REMARK 3 L11: 2.8519 L22: 5.5253 REMARK 3 L33: 3.0242 L12: 0.2792 REMARK 3 L13: -0.4108 L23: 0.1779 REMARK 3 S TENSOR REMARK 3 S11: -0.0769 S12: -0.6892 S13: 0.8217 REMARK 3 S21: 0.4567 S22: 0.0047 S23: 0.1614 REMARK 3 S31: 0.0201 S32: 0.0253 S33: 0.1811 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'A' AND (RESSEQ 237:266 OR RESSEQ REMARK 3 268:329 OR RESSEQ 331:444 ) AND (NOT REMARK 3 ELEMENT H) AND (NOT ELEMENT D) REMARK 3 SELECTION : CHAIN 'B' AND (RESSEQ 237:266 OR RESSEQ REMARK 3 268:329 OR RESSEQ 331:444 ) AND (NOT REMARK 3 ELEMENT H) AND (NOT ELEMENT D) REMARK 3 ATOM PAIRS NUMBER : 1648 REMARK 3 RMSD : 0.082 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WI5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203814. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13002 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, 0.1 M MES, 25% V/V ETHYLENE REMARK 280 GLYCOL, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.50200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.34150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.74150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.34150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.50200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.74150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 297 C2 NAG D 1 1.92 REMARK 500 OE1 GLN A 295 O2 FUC C 8 2.01 REMARK 500 OD1 ASP B 376 O HOH B 601 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 294 CB GLU A 294 CG -0.120 REMARK 500 TYR A 300 CB TYR A 300 CG -0.134 REMARK 500 TYR A 300 CD1 TYR A 300 CE1 -0.104 REMARK 500 TYR A 300 CE2 TYR A 300 CD2 -0.138 REMARK 500 TYR B 300 CB TYR B 300 CG -0.113 REMARK 500 TYR B 300 CE2 TYR B 300 CD2 -0.112 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 292 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 292 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 TYR A 300 CA - CB - CG ANGL. DEV. = -15.7 DEGREES REMARK 500 GLY A 341 N - CA - C ANGL. DEV. = -16.1 DEGREES REMARK 500 ARG A 344 NE - CZ - NH1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 356 CB - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 ASP A 356 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 356 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 LEU A 358 CA - CB - CG ANGL. DEV. = 19.6 DEGREES REMARK 500 LYS B 274 CB - CA - C ANGL. DEV. = -14.1 DEGREES REMARK 500 ARG B 292 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 TYR B 300 CA - CB - CG ANGL. DEV. = -17.6 DEGREES REMARK 500 ARG B 344 NE - CZ - NH1 ANGL. DEV. = -5.0 DEGREES REMARK 500 LEU B 358 CB - CG - CD1 ANGL. DEV. = -11.1 DEGREES REMARK 500 LEU B 358 CB - CG - CD2 ANGL. DEV. = 11.2 DEGREES REMARK 500 LEU B 406 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 254 40.13 -106.78 REMARK 500 ASP A 265 90.72 63.41 REMARK 500 LYS A 274 113.19 -167.76 REMARK 500 ASN A 286 33.33 -77.64 REMARK 500 ALA A 287 177.64 -59.15 REMARK 500 LYS A 288 83.53 -172.90 REMARK 500 GLN A 295 -151.63 -138.26 REMARK 500 ASN A 297 18.08 -59.80 REMARK 500 ARG A 301 95.28 -162.82 REMARK 500 ALA A 330 144.48 176.37 REMARK 500 ILE A 336 143.10 -174.92 REMARK 500 ARG A 355 -51.10 -22.15 REMARK 500 PRO A 387 153.62 -49.16 REMARK 500 ASP A 401 35.03 -85.25 REMARK 500 GLN A 418 -95.13 -56.27 REMARK 500 GLN A 419 -70.79 1.62 REMARK 500 ASN A 421 134.35 -12.57 REMARK 500 ALA A 431 16.28 -66.45 REMARK 500 ASP B 265 89.62 62.58 REMARK 500 ASP B 270 59.90 -145.08 REMARK 500 ASN B 286 32.51 -77.55 REMARK 500 ALA B 287 177.70 -57.46 REMARK 500 LYS B 288 81.43 -173.60 REMARK 500 GLN B 295 -155.19 -136.79 REMARK 500 ASN B 297 18.18 -61.33 REMARK 500 SER B 298 19.14 56.96 REMARK 500 ARG B 301 90.40 -160.80 REMARK 500 ALA B 330 143.15 176.43 REMARK 500 ILE B 336 138.89 -173.15 REMARK 500 ARG B 355 -51.74 -21.55 REMARK 500 PRO B 387 154.47 -47.51 REMARK 500 ASP B 401 31.32 -84.67 REMARK 500 GLN B 418 -94.91 -57.76 REMARK 500 GLN B 419 -72.24 3.44 REMARK 500 ASN B 421 134.87 -12.93 REMARK 500 ALA B 431 15.79 -60.08 REMARK 500 GLN B 438 111.70 -160.33 REMARK 500 SER B 442 -158.86 -159.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 299 TYR A 300 -145.05 REMARK 500 PRO B 291 ARG B 292 -148.84 REMARK 500 THR B 299 TYR B 300 -141.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WI2 RELATED DB: PDB REMARK 900 RELATED ID: 4WI4 RELATED DB: PDB REMARK 900 RELATED ID: 4WI6 RELATED DB: PDB REMARK 900 RELATED ID: 4WI3 RELATED DB: PDB REMARK 900 RELATED ID: 4WI7 RELATED DB: PDB REMARK 900 RELATED ID: 4WI8 RELATED DB: PDB REMARK 900 RELATED ID: 4WI9 RELATED DB: PDB DBREF 4WI5 A 237 444 UNP P01857 IGHG1_HUMAN 120 327 DBREF 4WI5 B 237 444 UNP P01857 IGHG1_HUMAN 120 327 SEQADV 4WI5 ALA A 310 UNP P01857 HIS 193 ENGINEERED MUTATION SEQADV 4WI5 ALA B 310 UNP P01857 HIS 193 ENGINEERED MUTATION SEQRES 1 A 208 GLY PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP SEQRES 2 A 208 THR LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL SEQRES 3 A 208 VAL VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE SEQRES 4 A 208 ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS SEQRES 5 A 208 THR LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG SEQRES 6 A 208 VAL VAL SER VAL LEU THR VAL LEU ALA GLN ASP TRP LEU SEQRES 7 A 208 ASN GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA SEQRES 8 A 208 LEU PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS SEQRES 9 A 208 GLY GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SEQRES 10 A 208 SER ARG ASP GLU LEU THR LYS ASN GLN VAL SER LEU THR SEQRES 11 A 208 CYS LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL SEQRES 12 A 208 GLU TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS SEQRES 13 A 208 THR THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE SEQRES 14 A 208 LEU TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP GLN SEQRES 15 A 208 GLN GLY ASN VAL PHE SER CYS SER VAL MET HIS GLU ALA SEQRES 16 A 208 LEU HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SER SEQRES 1 B 208 GLY PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP SEQRES 2 B 208 THR LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL SEQRES 3 B 208 VAL VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE SEQRES 4 B 208 ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS SEQRES 5 B 208 THR LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG SEQRES 6 B 208 VAL VAL SER VAL LEU THR VAL LEU ALA GLN ASP TRP LEU SEQRES 7 B 208 ASN GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA SEQRES 8 B 208 LEU PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS SEQRES 9 B 208 GLY GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SEQRES 10 B 208 SER ARG ASP GLU LEU THR LYS ASN GLN VAL SER LEU THR SEQRES 11 B 208 CYS LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL SEQRES 12 B 208 GLU TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS SEQRES 13 B 208 THR THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE SEQRES 14 B 208 LEU TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP GLN SEQRES 15 B 208 GLN GLY ASN VAL PHE SER CYS SER VAL MET HIS GLU ALA SEQRES 16 B 208 LEU HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SER HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG C 5 14 HET MAN C 6 11 HET NAG C 7 14 HET FUC C 8 10 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET NAG D 5 14 HET MAN D 6 11 HET NAG D 7 14 HET FUC D 8 10 HET EDO A 509 4 HET EDO B 509 4 HET EDO B 510 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 4(C6 H12 O6) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 5 EDO 3(C2 H6 O2) FORMUL 8 HOH *8(H2 O) HELIX 1 AA1 LYS A 246 LEU A 251 1 6 HELIX 2 AA2 LEU A 309 ASN A 315 1 7 HELIX 3 AA3 SER A 354 LYS A 360 5 7 HELIX 4 AA4 LYS A 414 GLY A 420 1 7 HELIX 5 AA5 LEU A 432 ASN A 434 5 3 HELIX 6 AA6 LYS B 246 LEU B 251 1 6 HELIX 7 AA7 LEU B 309 ASN B 315 1 7 HELIX 8 AA8 SER B 354 LYS B 360 5 7 HELIX 9 AA9 LYS B 414 GLY B 420 1 7 HELIX 10 AB1 LEU B 432 ASN B 434 5 3 SHEET 1 AA1 4 SER A 239 PHE A 243 0 SHEET 2 AA1 4 GLU A 258 VAL A 264 -1 O VAL A 262 N PHE A 241 SHEET 3 AA1 4 TYR A 300 THR A 307 -1 O LEU A 306 N VAL A 259 SHEET 4 AA1 4 THR A 289 GLU A 294 -1 N LYS A 290 O VAL A 303 SHEET 1 AA2 4 VAL A 282 GLU A 283 0 SHEET 2 AA2 4 VAL A 273 VAL A 279 -1 N VAL A 279 O VAL A 282 SHEET 3 AA2 4 TYR A 319 ASN A 325 -1 O SER A 324 N LYS A 274 SHEET 4 AA2 4 ILE A 332 LYS A 334 -1 O ILE A 332 N VAL A 323 SHEET 1 AA3 4 GLN A 347 LEU A 351 0 SHEET 2 AA3 4 GLN A 362 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 AA3 4 PHE A 404 ASP A 413 -1 O LEU A 410 N LEU A 365 SHEET 4 AA3 4 TYR A 391 THR A 393 -1 N LYS A 392 O LYS A 409 SHEET 1 AA4 4 GLN A 347 LEU A 351 0 SHEET 2 AA4 4 GLN A 362 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 AA4 4 PHE A 404 ASP A 413 -1 O LEU A 410 N LEU A 365 SHEET 4 AA4 4 VAL A 397 LEU A 398 -1 N VAL A 397 O PHE A 405 SHEET 1 AA5 4 GLN A 386 PRO A 387 0 SHEET 2 AA5 4 ALA A 378 SER A 383 -1 N SER A 383 O GLN A 386 SHEET 3 AA5 4 PHE A 423 MET A 428 -1 O SER A 426 N GLU A 380 SHEET 4 AA5 4 TYR A 436 LEU A 441 -1 O LYS A 439 N CYS A 425 SHEET 1 AA6 4 SER B 239 PHE B 243 0 SHEET 2 AA6 4 GLU B 258 VAL B 264 -1 O VAL B 262 N PHE B 241 SHEET 3 AA6 4 VAL B 303 THR B 307 -1 O LEU B 306 N VAL B 259 SHEET 4 AA6 4 THR B 289 LYS B 290 -1 N LYS B 290 O VAL B 303 SHEET 1 AA7 4 VAL B 282 VAL B 284 0 SHEET 2 AA7 4 VAL B 273 VAL B 279 -1 N VAL B 279 O VAL B 282 SHEET 3 AA7 4 TYR B 319 ASN B 325 -1 O SER B 324 N LYS B 274 SHEET 4 AA7 4 ILE B 332 LYS B 334 -1 O ILE B 332 N VAL B 323 SHEET 1 AA8 4 GLN B 347 LEU B 351 0 SHEET 2 AA8 4 GLN B 362 PHE B 372 -1 O THR B 366 N LEU B 351 SHEET 3 AA8 4 PHE B 404 ASP B 413 -1 O LEU B 410 N LEU B 365 SHEET 4 AA8 4 TYR B 391 THR B 393 -1 N LYS B 392 O LYS B 409 SHEET 1 AA9 4 GLN B 347 LEU B 351 0 SHEET 2 AA9 4 GLN B 362 PHE B 372 -1 O THR B 366 N LEU B 351 SHEET 3 AA9 4 PHE B 404 ASP B 413 -1 O LEU B 410 N LEU B 365 SHEET 4 AA9 4 VAL B 397 LEU B 398 -1 N VAL B 397 O PHE B 405 SHEET 1 AB1 4 GLN B 386 PRO B 387 0 SHEET 2 AB1 4 ALA B 378 SER B 383 -1 N SER B 383 O GLN B 386 SHEET 3 AB1 4 PHE B 423 MET B 428 -1 O SER B 426 N GLU B 380 SHEET 4 AB1 4 TYR B 436 LEU B 441 -1 O THR B 437 N VAL B 427 SSBOND 1 CYS A 261 CYS A 321 1555 1555 2.04 SSBOND 2 CYS A 367 CYS A 425 1555 1555 2.02 SSBOND 3 CYS B 261 CYS B 321 1555 1555 2.04 SSBOND 4 CYS B 367 CYS B 425 1555 1555 2.02 LINK ND2 ASN A 297 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN B 297 C1 NAG D 1 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O6 NAG C 1 C1 FUC C 8 1555 1555 1.45 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.45 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.43 LINK O6 BMA C 3 C1 MAN C 6 1555 1555 1.45 LINK O2 MAN C 4 C1 NAG C 5 1555 1555 1.44 LINK O2 MAN C 6 C1 NAG C 7 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O6 NAG D 1 C1 FUC D 8 1555 1555 1.45 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.45 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.44 LINK O6 BMA D 3 C1 MAN D 6 1555 1555 1.44 LINK O2 MAN D 4 C1 NAG D 5 1555 1555 1.44 LINK O2 MAN D 6 C1 NAG D 7 1555 1555 1.44 CISPEP 1 TYR A 373 PRO A 374 0 -10.23 CISPEP 2 TYR B 373 PRO B 374 0 -12.77 CRYST1 49.004 77.483 136.683 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020406 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012906 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007316 0.00000