HEADER IMMUNE SYSTEM 25-SEP-14 4WI9 TITLE STRUCTURAL MAPPING OF THE HUMAN IGG1 BINDING SITE FOR FCRN: HU3S193 FC TITLE 2 MUTATION I253A/H310A CAVEAT 4WI9 NAG E 1 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IG GAMMA-1 CHAIN C REGION; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 120-327; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IGHG1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: 293F KEYWDS HUMAN IGG1, FCRN BINDING SITE, THERAPEUTIC ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR W.FARRUGIA,I.J.G.BURVENICH,A.M.SCOTT,P.A.RAMSLAND REVDAT 5 27-DEC-23 4WI9 1 HETSYN LINK REVDAT 4 29-JUL-20 4WI9 1 CAVEAT COMPND REMARK HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 08-JAN-20 4WI9 1 REMARK REVDAT 2 13-SEP-17 4WI9 1 REMARK REVDAT 1 30-SEP-15 4WI9 0 JRNL AUTH I.J.G.BURVENICH,W.FARRUGIA,F.T.LEE,B.CATIMEL,Z.LIU,D.MAKRIS, JRNL AUTH 2 D.CAO,G.O'KEEFE,M.W.BRECHBIEL,D.KING,V.SPIRKOSKA,L.ALLAN, JRNL AUTH 3 P.A.RAMSLAND,A.M.SCOTT JRNL TITL STRUCTURAL AND FUNCTIONAL MAPPING OF HUMAN IGG1 BINDING SITE JRNL TITL 2 FOR FCRN IN VIVO USING HUMAN FCRN TRANSGENIC MICE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 16281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 6.0519 0.99 1310 146 0.1839 0.2236 REMARK 3 2 6.0519 - 4.8101 1.00 1256 139 0.1813 0.2604 REMARK 3 3 4.8101 - 4.2040 1.00 1231 137 0.1647 0.2097 REMARK 3 4 4.2040 - 3.8205 1.00 1221 136 0.2126 0.2753 REMARK 3 5 3.8205 - 3.5471 1.00 1211 134 0.2276 0.3163 REMARK 3 6 3.5471 - 3.3383 1.00 1230 137 0.2192 0.3275 REMARK 3 7 3.3383 - 3.1713 1.00 1195 134 0.2091 0.3041 REMARK 3 8 3.1713 - 3.0334 1.00 1211 133 0.2352 0.2874 REMARK 3 9 3.0334 - 2.9167 1.00 1187 131 0.2393 0.3557 REMARK 3 10 2.9167 - 2.8161 1.00 1206 135 0.2904 0.3329 REMARK 3 11 2.8161 - 2.7281 1.00 1180 131 0.2994 0.3758 REMARK 3 12 2.7281 - 2.6502 1.00 1215 135 0.3165 0.3719 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 57.20 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -17.33660 REMARK 3 B22 (A**2) : -4.08950 REMARK 3 B33 (A**2) : 21.42610 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3619 REMARK 3 ANGLE : 1.272 4952 REMARK 3 CHIRALITY : 0.073 590 REMARK 3 PLANARITY : 0.006 606 REMARK 3 DIHEDRAL : 28.192 1430 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 237:264) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7235 -13.8400 19.4598 REMARK 3 T TENSOR REMARK 3 T11: 0.6256 T22: 0.8852 REMARK 3 T33: 0.6507 T12: -0.4609 REMARK 3 T13: -0.0995 T23: -0.3257 REMARK 3 L TENSOR REMARK 3 L11: 1.7780 L22: 2.2947 REMARK 3 L33: 3.0247 L12: -0.1332 REMARK 3 L13: -0.7403 L23: 0.0368 REMARK 3 S TENSOR REMARK 3 S11: -0.7079 S12: 1.3188 S13: -0.8303 REMARK 3 S21: -0.5475 S22: 0.7486 S23: 0.7053 REMARK 3 S31: 0.8398 S32: -1.2446 S33: -0.1512 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 265:279) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6324 -15.0476 1.4518 REMARK 3 T TENSOR REMARK 3 T11: 1.1030 T22: 1.1329 REMARK 3 T33: 0.6900 T12: -0.2475 REMARK 3 T13: 0.1570 T23: -0.2812 REMARK 3 L TENSOR REMARK 3 L11: 0.4051 L22: 0.7152 REMARK 3 L33: 1.2356 L12: -0.2332 REMARK 3 L13: -0.4581 L23: -0.3674 REMARK 3 S TENSOR REMARK 3 S11: -0.0298 S12: 0.4866 S13: 0.4825 REMARK 3 S21: -0.7204 S22: 0.0723 S23: -0.5451 REMARK 3 S31: 0.3996 S32: -0.5516 S33: -0.0042 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 280:301) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1194 -18.8413 6.7551 REMARK 3 T TENSOR REMARK 3 T11: 0.9766 T22: 1.2275 REMARK 3 T33: 1.2516 T12: -0.0803 REMARK 3 T13: 0.2246 T23: -0.2275 REMARK 3 L TENSOR REMARK 3 L11: 1.8210 L22: 0.9770 REMARK 3 L33: 1.0552 L12: 0.6605 REMARK 3 L13: 0.8156 L23: -0.4642 REMARK 3 S TENSOR REMARK 3 S11: 0.6333 S12: 0.1808 S13: 0.8181 REMARK 3 S21: -1.0885 S22: -0.6213 S23: -0.2672 REMARK 3 S31: 0.5551 S32: -0.3398 S33: -0.1318 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 302:336) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2448 -10.5915 12.3501 REMARK 3 T TENSOR REMARK 3 T11: 1.1283 T22: 0.6863 REMARK 3 T33: 0.7193 T12: -0.3194 REMARK 3 T13: 0.2525 T23: -0.0428 REMARK 3 L TENSOR REMARK 3 L11: 1.2959 L22: 1.1901 REMARK 3 L33: 3.1224 L12: -1.0393 REMARK 3 L13: -1.9016 L23: 1.1874 REMARK 3 S TENSOR REMARK 3 S11: -0.9762 S12: 0.8896 S13: -0.5491 REMARK 3 S21: -1.4923 S22: 0.2190 S23: -1.0715 REMARK 3 S31: 0.1015 S32: -0.0768 S33: -0.0247 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 337:444) REMARK 3 ORIGIN FOR THE GROUP (A): -20.2495 -7.4022 41.0211 REMARK 3 T TENSOR REMARK 3 T11: 0.3643 T22: 0.4454 REMARK 3 T33: 0.5104 T12: 0.0232 REMARK 3 T13: -0.1261 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 3.8826 L22: 3.3895 REMARK 3 L33: 2.7699 L12: -0.3194 REMARK 3 L13: -0.5177 L23: 1.0100 REMARK 3 S TENSOR REMARK 3 S11: 0.0640 S12: -0.6984 S13: -0.7318 REMARK 3 S21: 0.3631 S22: 0.0563 S23: -0.2423 REMARK 3 S31: 0.2273 S32: 0.0784 S33: -0.0167 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 237:300) REMARK 3 ORIGIN FOR THE GROUP (A): -31.2617 13.6228 7.8231 REMARK 3 T TENSOR REMARK 3 T11: 1.8065 T22: 0.5395 REMARK 3 T33: 0.5772 T12: -0.3026 REMARK 3 T13: 0.3316 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.9329 L22: 1.6911 REMARK 3 L33: 4.2324 L12: -0.6014 REMARK 3 L13: 0.4647 L23: -0.3901 REMARK 3 S TENSOR REMARK 3 S11: -0.1242 S12: 0.3403 S13: 0.1752 REMARK 3 S21: -2.1896 S22: 0.2393 S23: -0.5924 REMARK 3 S31: -0.3517 S32: 0.3867 S33: -0.1171 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 301:336) REMARK 3 ORIGIN FOR THE GROUP (A): -37.1514 9.1670 7.5730 REMARK 3 T TENSOR REMARK 3 T11: 1.6365 T22: 0.7004 REMARK 3 T33: 0.4634 T12: 0.0685 REMARK 3 T13: -0.1795 T23: -0.1614 REMARK 3 L TENSOR REMARK 3 L11: 0.0108 L22: 0.0772 REMARK 3 L33: 6.8499 L12: -0.0108 REMARK 3 L13: 0.2413 L23: 0.9312 REMARK 3 S TENSOR REMARK 3 S11: -0.1912 S12: 0.6436 S13: -0.0042 REMARK 3 S21: -2.2796 S22: 0.6308 S23: 0.3931 REMARK 3 S31: -0.0143 S32: -0.7923 S33: 0.2718 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 337:444) REMARK 3 ORIGIN FOR THE GROUP (A): -30.2976 6.5486 39.4896 REMARK 3 T TENSOR REMARK 3 T11: 0.3212 T22: 0.4991 REMARK 3 T33: 0.5306 T12: -0.0463 REMARK 3 T13: 0.0421 T23: -0.1007 REMARK 3 L TENSOR REMARK 3 L11: 3.3858 L22: 3.0303 REMARK 3 L33: 2.8366 L12: -1.3409 REMARK 3 L13: -0.4199 L23: -0.1617 REMARK 3 S TENSOR REMARK 3 S11: 0.0609 S12: -0.7278 S13: 0.5030 REMARK 3 S21: 0.1649 S22: 0.0967 S23: -0.0899 REMARK 3 S31: -0.1087 S32: 0.0815 S33: -0.1207 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WI9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203818. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16296 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, 0.1 M MES, 25% V/V ETHYLENE REMARK 280 GLYCOL, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.58150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.44850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.82700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.44850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.58150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.82700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 392 O HOH A 614 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 291 C - N - CA ANGL. DEV. = 10.1 DEGREES REMARK 500 PRO B 291 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 253 -78.71 -48.86 REMARK 500 SER A 254 47.46 -96.09 REMARK 500 THR A 256 76.08 -114.07 REMARK 500 VAL A 266 -165.22 -77.53 REMARK 500 SER A 267 -135.06 -90.54 REMARK 500 HIS A 268 -47.83 -161.62 REMARK 500 GLU A 272 93.41 -62.50 REMARK 500 ASN A 286 38.11 -83.72 REMARK 500 LYS A 288 98.94 -165.35 REMARK 500 PRO A 291 157.47 -31.78 REMARK 500 ASN A 434 18.55 52.84 REMARK 500 HIS A 435 16.25 58.84 REMARK 500 ALA B 253 -82.16 -31.87 REMARK 500 SER B 267 -148.32 -97.04 REMARK 500 HIS B 268 -26.99 -141.00 REMARK 500 THR B 289 70.28 -106.48 REMARK 500 PRO B 291 162.18 -33.18 REMARK 500 GLU B 294 -161.26 -75.66 REMARK 500 TYR B 296 -82.63 -61.23 REMARK 500 ASN B 297 42.93 -57.61 REMARK 500 SER B 298 -8.11 60.93 REMARK 500 ASN B 389 -65.62 -90.37 REMARK 500 ASN B 390 70.12 -65.54 REMARK 500 HIS B 435 15.21 58.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG D 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WI2 RELATED DB: PDB REMARK 900 RELATED ID: 4WI3 RELATED DB: PDB REMARK 900 RELATED ID: 4WI4 RELATED DB: PDB REMARK 900 RELATED ID: 4WI5 RELATED DB: PDB REMARK 900 RELATED ID: 4WI6 RELATED DB: PDB REMARK 900 RELATED ID: 4WI7 RELATED DB: PDB REMARK 900 RELATED ID: 4WI8 RELATED DB: PDB DBREF 4WI9 A 237 444 UNP P01857 IGHG1_HUMAN 120 327 DBREF 4WI9 B 237 444 UNP P01857 IGHG1_HUMAN 120 327 SEQADV 4WI9 ALA A 253 UNP P01857 ILE 136 ENGINEERED MUTATION SEQADV 4WI9 ALA A 310 UNP P01857 HIS 193 ENGINEERED MUTATION SEQADV 4WI9 ALA B 253 UNP P01857 ILE 136 ENGINEERED MUTATION SEQADV 4WI9 ALA B 310 UNP P01857 HIS 193 ENGINEERED MUTATION SEQRES 1 A 208 GLY PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP SEQRES 2 A 208 THR LEU MET ALA SER ARG THR PRO GLU VAL THR CYS VAL SEQRES 3 A 208 VAL VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE SEQRES 4 A 208 ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS SEQRES 5 A 208 THR LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG SEQRES 6 A 208 VAL VAL SER VAL LEU THR VAL LEU ALA GLN ASP TRP LEU SEQRES 7 A 208 ASN GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA SEQRES 8 A 208 LEU PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS SEQRES 9 A 208 GLY GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SEQRES 10 A 208 SER ARG ASP GLU LEU THR LYS ASN GLN VAL SER LEU THR SEQRES 11 A 208 CYS LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL SEQRES 12 A 208 GLU TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS SEQRES 13 A 208 THR THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE SEQRES 14 A 208 LEU TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP GLN SEQRES 15 A 208 GLN GLY ASN VAL PHE SER CYS SER VAL MET HIS GLU ALA SEQRES 16 A 208 LEU HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SER SEQRES 1 B 208 GLY PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP SEQRES 2 B 208 THR LEU MET ALA SER ARG THR PRO GLU VAL THR CYS VAL SEQRES 3 B 208 VAL VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE SEQRES 4 B 208 ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS SEQRES 5 B 208 THR LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG SEQRES 6 B 208 VAL VAL SER VAL LEU THR VAL LEU ALA GLN ASP TRP LEU SEQRES 7 B 208 ASN GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA SEQRES 8 B 208 LEU PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS SEQRES 9 B 208 GLY GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SEQRES 10 B 208 SER ARG ASP GLU LEU THR LYS ASN GLN VAL SER LEU THR SEQRES 11 B 208 CYS LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL SEQRES 12 B 208 GLU TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS SEQRES 13 B 208 THR THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE SEQRES 14 B 208 LEU TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP GLN SEQRES 15 B 208 GLN GLY ASN VAL PHE SER CYS SER VAL MET HIS GLU ALA SEQRES 16 B 208 LEU HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SER HET NAG C 1 14 HET FUC C 2 10 HET NAG D 1 14 HET BMA D 2 11 HET MAN D 3 11 HET NAG D 4 14 HET MAN D 5 11 HET NAG D 6 14 HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET MAN E 4 11 HET NAG E 5 14 HET MAN E 6 11 HET NAG E 7 14 HET FUC E 8 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 4 BMA 2(C6 H12 O6) FORMUL 4 MAN 4(C6 H12 O6) FORMUL 6 HOH *30(H2 O) HELIX 1 AA1 PRO A 247 LEU A 251 5 5 HELIX 2 AA2 LEU A 309 ASN A 315 1 7 HELIX 3 AA3 SER A 354 LYS A 360 5 7 HELIX 4 AA4 LYS A 414 GLN A 419 1 6 HELIX 5 AA5 LEU A 432 ASN A 434 5 3 HELIX 6 AA6 LYS B 246 MET B 252 1 7 HELIX 7 AA7 LEU B 309 GLY B 316 1 8 HELIX 8 AA8 SER B 354 LYS B 360 5 7 HELIX 9 AA9 LYS B 414 GLN B 419 1 6 HELIX 10 AB1 LEU B 432 ASN B 434 5 3 SHEET 1 AA1 3 SER A 239 PHE A 243 0 SHEET 2 AA1 3 GLU A 258 VAL A 264 -1 O VAL A 262 N PHE A 241 SHEET 3 AA1 3 VAL A 303 THR A 307 -1 O SER A 304 N CYS A 261 SHEET 1 AA2 4 VAL A 282 VAL A 284 0 SHEET 2 AA2 4 LYS A 274 VAL A 279 -1 N VAL A 279 O VAL A 282 SHEET 3 AA2 4 TYR A 319 SER A 324 -1 O SER A 324 N LYS A 274 SHEET 4 AA2 4 ILE A 332 ILE A 336 -1 O ILE A 336 N TYR A 319 SHEET 1 AA3 4 GLN A 347 LEU A 351 0 SHEET 2 AA3 4 GLN A 362 PHE A 372 -1 O THR A 366 N LEU A 351 SHEET 3 AA3 4 PHE A 404 ASP A 413 -1 O LEU A 410 N LEU A 365 SHEET 4 AA3 4 TYR A 391 THR A 393 -1 N LYS A 392 O LYS A 409 SHEET 1 AA4 4 GLN A 347 LEU A 351 0 SHEET 2 AA4 4 GLN A 362 PHE A 372 -1 O THR A 366 N LEU A 351 SHEET 3 AA4 4 PHE A 404 ASP A 413 -1 O LEU A 410 N LEU A 365 SHEET 4 AA4 4 VAL A 397 LEU A 398 -1 N VAL A 397 O PHE A 405 SHEET 1 AA5 4 GLN A 386 PRO A 387 0 SHEET 2 AA5 4 ALA A 378 SER A 383 -1 N SER A 383 O GLN A 386 SHEET 3 AA5 4 PHE A 423 MET A 428 -1 O SER A 426 N GLU A 380 SHEET 4 AA5 4 TYR A 436 LEU A 441 -1 O LYS A 439 N CYS A 425 SHEET 1 AA6 3 SER B 239 PHE B 243 0 SHEET 2 AA6 3 GLU B 258 VAL B 264 -1 O VAL B 262 N PHE B 241 SHEET 3 AA6 3 ARG B 301 THR B 307 -1 O VAL B 302 N VAL B 263 SHEET 1 AA7 4 LYS B 274 PHE B 275 0 SHEET 2 AA7 4 TYR B 319 SER B 324 -1 O SER B 324 N LYS B 274 SHEET 3 AA7 4 TYR B 278 VAL B 279 -1 N TYR B 278 O LYS B 320 SHEET 4 AA7 4 VAL B 282 GLU B 283 -1 O VAL B 282 N VAL B 279 SHEET 1 AA8 3 LYS B 274 PHE B 275 0 SHEET 2 AA8 3 TYR B 319 SER B 324 -1 O SER B 324 N LYS B 274 SHEET 3 AA8 3 ILE B 332 ILE B 336 -1 O ILE B 336 N TYR B 319 SHEET 1 AA9 4 GLN B 347 LEU B 351 0 SHEET 2 AA9 4 GLN B 362 PHE B 372 -1 O LYS B 370 N GLN B 347 SHEET 3 AA9 4 PHE B 404 ASP B 413 -1 O LEU B 410 N LEU B 365 SHEET 4 AA9 4 TYR B 391 THR B 393 -1 N LYS B 392 O LYS B 409 SHEET 1 AB1 4 GLN B 347 LEU B 351 0 SHEET 2 AB1 4 GLN B 362 PHE B 372 -1 O LYS B 370 N GLN B 347 SHEET 3 AB1 4 PHE B 404 ASP B 413 -1 O LEU B 410 N LEU B 365 SHEET 4 AB1 4 VAL B 397 LEU B 398 -1 N VAL B 397 O PHE B 405 SHEET 1 AB2 4 GLN B 386 PRO B 387 0 SHEET 2 AB2 4 ALA B 378 SER B 383 -1 N SER B 383 O GLN B 386 SHEET 3 AB2 4 PHE B 423 MET B 428 -1 O SER B 426 N GLU B 380 SHEET 4 AB2 4 TYR B 436 LEU B 441 -1 O THR B 437 N VAL B 427 SSBOND 1 CYS A 261 CYS A 321 1555 1555 2.03 SSBOND 2 CYS A 367 CYS A 425 1555 1555 2.05 SSBOND 3 CYS B 261 CYS B 321 1555 1555 2.04 SSBOND 4 CYS B 367 CYS B 425 1555 1555 2.04 LINK ND2 ASN A 297 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN B 297 C1 NAG E 1 1555 1555 1.45 LINK O6 NAG C 1 C1 FUC C 2 1555 1555 1.44 LINK O4 NAG D 1 C1 BMA D 2 1555 1555 1.46 LINK O3 BMA D 2 C1 MAN D 3 1555 1555 1.44 LINK O6 BMA D 2 C1 MAN D 5 1555 1555 1.45 LINK O2 MAN D 3 C1 NAG D 4 1555 1555 1.44 LINK O2 MAN D 5 C1 NAG D 6 1555 1555 1.46 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.46 LINK O6 NAG E 1 C1 FUC E 8 1555 1555 1.44 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.46 LINK O3 BMA E 3 C1 MAN E 4 1555 1555 1.45 LINK O6 BMA E 3 C1 MAN E 6 1555 1555 1.45 LINK O2 MAN E 4 C1 NAG E 5 1555 1555 1.43 LINK O2 MAN E 6 C1 NAG E 7 1555 1555 1.45 CISPEP 1 TYR A 373 PRO A 374 0 -10.14 CISPEP 2 TYR B 373 PRO B 374 0 -6.99 CRYST1 49.163 77.654 140.897 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020340 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012878 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007097 0.00000