HEADER LYASE 26-SEP-14 4WIM TITLE CRYSTAL STRUCTURE OF THE GMP SYNTHETASE FROM PLASMODIUM FALCIPARUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GMP SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 2-554; COMPND 5 EC: 6.3.5.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM 3D7; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 GENE: PF10_0123; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS GMP SYNTHETASE, PURINE SALVAGE PATHWAY, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR L.BALLUT,S.VIOLOT,R.HASER,N.AGHAJARI REVDAT 4 10-JAN-24 4WIM 1 REMARK REVDAT 3 24-OCT-18 4WIM 1 SOURCE REMARK LINK ATOM REVDAT 2 09-DEC-15 4WIM 1 JRNL REVDAT 1 02-DEC-15 4WIM 0 JRNL AUTH L.BALLUT,S.VIOLOT,S.SHIVAKUMARASWAMY,L.P.THOTA,M.SATHYA, JRNL AUTH 2 J.KUNALA,B.W.DIJKSTRA,R.TERREUX,R.HASER,H.BALARAM,N.AGHAJARI JRNL TITL ACTIVE SITE COUPLING IN PLASMODIUM FALCIPARUM GMP SYNTHETASE JRNL TITL 2 IS TRIGGERED BY DOMAIN ROTATION. JRNL REF NAT COMMUN V. 6 8930 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26592566 JRNL DOI 10.1038/NCOMMS9930 REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.4 REMARK 3 NUMBER OF REFLECTIONS : 11730 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.282 REMARK 3 R VALUE (WORKING SET) : 0.282 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 594 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.3099 - 5.7125 0.87 2713 143 0.2794 0.2625 REMARK 3 2 5.7125 - 4.5352 0.89 2809 133 0.2798 0.2907 REMARK 3 3 4.5352 - 3.9622 0.90 2759 160 0.2699 0.3561 REMARK 3 4 3.9622 - 3.6001 0.92 2855 158 0.3067 0.3307 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.035 7411 REMARK 3 ANGLE : 3.448 10084 REMARK 3 CHIRALITY : 0.230 1179 REMARK 3 PLANARITY : 0.015 1314 REMARK 3 DIHEDRAL : 19.167 2527 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WIM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203830. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97239 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13123 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.600 REMARK 200 RESOLUTION RANGE LOW (A) : 98.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.8 REMARK 200 DATA REDUNDANCY : 1.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3UOW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 3350, 0.2 M DIAMMONIUM REMARK 280 TARTRATE AND 5 MM NACL, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -12 REMARK 465 ARG A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 GLU A 2 REMARK 465 GLY A 3 REMARK 465 GLU A 4 REMARK 465 TYR A 60 REMARK 465 LYS A 379 REMARK 465 ASN A 380 REMARK 465 LEU A 381 REMARK 465 SER A 382 REMARK 465 ASP A 383 REMARK 465 THR A 384 REMARK 465 ILE A 385 REMARK 465 LYS A 386 REMARK 465 THR A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 ASN A 390 REMARK 465 VAL A 391 REMARK 465 GLY A 392 REMARK 465 GLY A 393 REMARK 465 LEU A 394 REMARK 465 PRO A 395 REMARK 465 LYS A 396 REMARK 465 ASN A 397 REMARK 465 SER A 486 REMARK 465 VAL A 487 REMARK 465 GLY A 488 REMARK 465 VAL A 489 REMARK 465 ARG A 490 REMARK 465 GLY A 491 REMARK 465 ASP A 492 REMARK 465 ALA A 493 REMARK 465 ARG A 494 REMARK 465 SER A 495 REMARK 465 TYR A 496 REMARK 465 MET B -12 REMARK 465 ARG B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 MET B 0 REMARK 465 ALA B 1 REMARK 465 GLU B 2 REMARK 465 GLY B 3 REMARK 465 GLU B 4 REMARK 465 GLU B 5 REMARK 465 TYR B 6 REMARK 465 ASP B 7 REMARK 465 LYS B 8 REMARK 465 MET B 140 REMARK 465 ASP B 141 REMARK 465 LEU B 142 REMARK 465 TYR B 143 REMARK 465 SER B 144 REMARK 465 ASN B 145 REMARK 465 TYR B 146 REMARK 465 LYS B 147 REMARK 465 LEU B 148 REMARK 465 MET B 149 REMARK 465 ASN B 150 REMARK 465 GLU B 151 REMARK 465 CYS B 231 REMARK 465 LYS B 232 REMARK 465 LYS B 233 REMARK 465 GLN B 234 REMARK 465 GLU B 280 REMARK 465 ARG B 281 REMARK 465 PHE B 282 REMARK 465 PHE B 283 REMARK 465 GLY B 284 REMARK 465 ILE B 285 REMARK 465 PHE B 286 REMARK 465 ASP B 355 REMARK 465 ILE B 356 REMARK 465 ASP B 357 REMARK 465 ILE B 358 REMARK 465 ASN B 359 REMARK 465 LYS B 360 REMARK 465 THR B 361 REMARK 465 PHE B 362 REMARK 465 LEU B 363 REMARK 465 LEU B 364 REMARK 465 GLN B 365 REMARK 465 GLY B 366 REMARK 465 THR B 367 REMARK 465 ASN B 380 REMARK 465 LEU B 381 REMARK 465 SER B 382 REMARK 465 ASP B 383 REMARK 465 THR B 384 REMARK 465 ILE B 385 REMARK 465 LYS B 386 REMARK 465 THR B 387 REMARK 465 HIS B 388 REMARK 465 HIS B 389 REMARK 465 ASN B 390 REMARK 465 VAL B 391 REMARK 465 GLY B 392 REMARK 465 GLY B 393 REMARK 465 LEU B 394 REMARK 465 PRO B 395 REMARK 465 LYS B 396 REMARK 465 ASN B 397 REMARK 465 LEU B 398 REMARK 465 LYS B 399 REMARK 465 PHE B 400 REMARK 465 LYS B 401 REMARK 465 SER B 486 REMARK 465 VAL B 487 REMARK 465 GLY B 488 REMARK 465 VAL B 489 REMARK 465 ARG B 490 REMARK 465 GLY B 491 REMARK 465 ASP B 492 REMARK 465 ALA B 493 REMARK 465 ARG B 494 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 5 CG CD OE1 OE2 REMARK 470 ASP A 7 CG OD1 OD2 REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 LEU A 12 CD1 CD2 REMARK 470 HIS A 20 CE1 NE2 REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 LYS A 30 NZ REMARK 470 ILE A 31 CG1 CG2 CD1 REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 LYS A 43 NZ REMARK 470 LYS A 46 CE NZ REMARK 470 ASP A 47 CG OD1 OD2 REMARK 470 GLU A 64 OE1 OE2 REMARK 470 LYS A 71 CG CD CE NZ REMARK 470 PHE A 78 CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 79 CG CD1 CD2 REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 ILE A 85 CG1 CG2 CD1 REMARK 470 TYR A 90 CZ OH REMARK 470 MET A 92 CG SD CE REMARK 470 GLU A 94 CG CD OE1 OE2 REMARK 470 ASN A 100 CG OD1 ND2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 GLU A 110 CG CD OE1 OE2 REMARK 470 ILE A 124 CG1 CG2 CD1 REMARK 470 ARG A 131 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 135 CG OD1 OD2 REMARK 470 SER A 136 OG REMARK 470 SER A 137 OG REMARK 470 SER A 138 OG REMARK 470 MET A 140 SD CE REMARK 470 TYR A 143 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 150 OD1 ND2 REMARK 470 GLU A 151 CG CD OE1 OE2 REMARK 470 ASN A 158 CG OD1 ND2 REMARK 470 SER A 161 OG REMARK 470 LEU A 191 CG CD1 CD2 REMARK 470 TYR A 200 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A 224 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 233 CG CD CE NZ REMARK 470 GLN A 234 CG CD OE1 NE2 REMARK 470 LYS A 250 NZ REMARK 470 TYR A 251 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 ASP A 254 CG OD1 OD2 REMARK 470 HIS A 255 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 265 CG1 CG2 CD1 REMARK 470 HIS A 275 CE1 NE2 REMARK 470 ILE A 277 CG1 CG2 CD1 REMARK 470 GLU A 280 CG CD OE1 OE2 REMARK 470 PHE A 282 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 285 CD1 REMARK 470 ILE A 287 CG1 CG2 CD1 REMARK 470 LEU A 291 CG CD1 CD2 REMARK 470 LYS A 294 CE NZ REMARK 470 ASN A 295 OD1 ND2 REMARK 470 GLU A 296 CG CD OE1 OE2 REMARK 470 VAL A 300 CG1 CG2 REMARK 470 PHE A 303 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 310 CG OD1 OD2 REMARK 470 MET A 311 CG SD CE REMARK 470 ILE A 316 CG1 CG2 CD1 REMARK 470 LEU A 326 CD1 CD2 REMARK 470 GLN A 327 CG CD OE1 NE2 REMARK 470 ASP A 331 CG OD1 OD2 REMARK 470 LYS A 335 CG CD CE NZ REMARK 470 LYS A 337 CG CD CE NZ REMARK 470 LYS A 341 CG CD CE NZ REMARK 470 ILE A 344 CG1 CG2 CD1 REMARK 470 GLU A 345 CG CD OE1 OE2 REMARK 470 ILE A 356 CG1 CG2 CD1 REMARK 470 ASP A 357 CG OD1 OD2 REMARK 470 ILE A 358 CG1 CG2 CD1 REMARK 470 ILE A 373 CG1 CG2 CD1 REMARK 470 LEU A 398 CG CD1 CD2 REMARK 470 LYS A 399 CG CD CE NZ REMARK 470 LYS A 401 CE NZ REMARK 470 LYS A 407 NZ REMARK 470 ASN A 429 CG OD1 ND2 REMARK 470 ILE A 443 CG1 CG2 CD1 REMARK 470 LYS A 450 NZ REMARK 470 TYR A 471 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 481 CG CD1 CD2 REMARK 470 LEU A 482 CD1 CD2 REMARK 470 LYS A 485 CG CD CE NZ REMARK 470 ASP A 497 CG OD1 OD2 REMARK 470 CYS A 500 SG REMARK 470 MET A 511 CE REMARK 470 ASP A 521 CG OD1 OD2 REMARK 470 ASP A 524 CG OD1 OD2 REMARK 470 SER A 545 OG REMARK 470 ILE B 9 CG1 CG2 CD1 REMARK 470 LEU B 10 CG CD1 CD2 REMARK 470 LEU B 12 CG CD1 CD2 REMARK 470 PHE B 19 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 26 CG CD1 CD2 REMARK 470 ILE B 31 CD1 REMARK 470 LYS B 36 CG CD CE NZ REMARK 470 ASP B 37 CG OD1 OD2 REMARK 470 TYR B 38 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE B 45 CG1 CG2 CD1 REMARK 470 LYS B 46 CG CD CE NZ REMARK 470 ILE B 50 CG1 CG2 CD1 REMARK 470 ILE B 54 CG1 CG2 CD1 REMARK 470 SER B 56 OG REMARK 470 VAL B 62 CG1 CG2 REMARK 470 GLU B 64 CG CD OE1 OE2 REMARK 470 LYS B 71 CG CD CE NZ REMARK 470 PHE B 75 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE B 78 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 80 CG CD OE1 OE2 REMARK 470 LYS B 81 CG CD CE NZ REMARK 470 ILE B 83 CG1 CG2 CD1 REMARK 470 ILE B 88 CG1 CG2 CD1 REMARK 470 MET B 99 CG SD CE REMARK 470 ASN B 100 CG OD1 ND2 REMARK 470 LYS B 105 CG CD CE NZ REMARK 470 LYS B 107 CG CD CE NZ REMARK 470 SER B 109 OG REMARK 470 GLU B 110 CG CD OE1 OE2 REMARK 470 CYS B 113 SG REMARK 470 ASP B 115 CG OD1 OD2 REMARK 470 LEU B 119 CG CD1 CD2 REMARK 470 ARG B 120 CZ NH1 NH2 REMARK 470 ILE B 124 CG1 CG2 CD1 REMARK 470 ASN B 125 CG OD1 ND2 REMARK 470 ASN B 126 CG OD1 ND2 REMARK 470 ARG B 131 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 135 CG OD1 OD2 REMARK 470 SER B 137 OG REMARK 470 THR B 152 OG1 CG2 REMARK 470 CYS B 153 SG REMARK 470 LEU B 155 CG CD1 CD2 REMARK 470 PHE B 156 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 157 OE1 OE2 REMARK 470 ASN B 158 CG OD1 ND2 REMARK 470 ILE B 159 CG1 CG2 CD1 REMARK 470 LYS B 160 CG CD CE NZ REMARK 470 ASP B 162 CG OD1 OD2 REMARK 470 MET B 168 CG SD CE REMARK 470 VAL B 174 CG1 CG2 REMARK 470 ILE B 177 CG1 CG2 CD1 REMARK 470 GLU B 179 CG CD OE1 OE2 REMARK 470 ASN B 180 CG OD1 ND2 REMARK 470 LEU B 183 CG CD1 CD2 REMARK 470 CYS B 190 SG REMARK 470 TYR B 196 OH REMARK 470 ASN B 197 CG OD1 ND2 REMARK 470 LYS B 198 CG CD CE NZ REMARK 470 TYR B 200 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN B 206 CG CD OE1 NE2 REMARK 470 TYR B 207 CE1 CE2 CZ OH REMARK 470 GLU B 213 CG CD OE1 OE2 REMARK 470 LEU B 215 CG CD1 CD2 REMARK 470 GLU B 218 CG CD OE1 OE2 REMARK 470 MET B 220 CE REMARK 470 TYR B 222 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE B 224 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN B 227 CG OD1 ND2 REMARK 470 CYS B 229 SG REMARK 470 LYS B 230 CG CD CE NZ REMARK 470 PHE B 235 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 244 CG CD OE1 OE2 REMARK 470 ILE B 248 CD1 REMARK 470 GLU B 249 CG CD OE1 OE2 REMARK 470 LYS B 250 CG CD CE NZ REMARK 470 TYR B 251 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 252 CG CD CE NZ REMARK 470 ASP B 254 CG OD1 OD2 REMARK 470 HIS B 255 CG ND1 CD2 CE1 NE2 REMARK 470 TYR B 256 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL B 257 CG1 CG2 REMARK 470 ILE B 258 CG1 CG2 CD1 REMARK 470 ASP B 266 CG OD1 OD2 REMARK 470 TYR B 273 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 276 CG CD CE NZ REMARK 470 ILE B 277 CD1 REMARK 470 LYS B 279 CG CD CE NZ REMARK 470 ILE B 287 CG1 CG2 CD1 REMARK 470 ASP B 288 CG OD1 OD2 REMARK 470 ASN B 289 CG OD1 ND2 REMARK 470 LYS B 294 CE NZ REMARK 470 GLU B 296 CG CD OE1 OE2 REMARK 470 GLU B 298 CD OE1 OE2 REMARK 470 ASN B 299 CG OD1 ND2 REMARK 470 TYR B 301 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR B 302 OG1 CG2 REMARK 470 PHE B 303 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 304 CG CD1 CD2 REMARK 470 LYS B 305 NZ REMARK 470 PHE B 308 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 315 CD CE NZ REMARK 470 GLU B 320 CG CD OE1 OE2 REMARK 470 PHE B 322 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 323 CG CD1 CD2 REMARK 470 ASN B 325 CG OD1 ND2 REMARK 470 LEU B 326 CG CD1 CD2 REMARK 470 ASP B 331 CG OD1 OD2 REMARK 470 LYS B 337 CG CD CE NZ REMARK 470 ILE B 338 CG1 CG2 CD1 REMARK 470 LEU B 342 CG CD1 CD2 REMARK 470 GLU B 345 CG CD OE1 OE2 REMARK 470 GLU B 346 CG CD OE1 OE2 REMARK 470 LYS B 349 CG CD CE NZ REMARK 470 ASN B 352 CG OD1 ND2 REMARK 470 ASN B 353 CG OD1 ND2 REMARK 470 ILE B 354 CG1 CG2 CD1 REMARK 470 LEU B 368 CG CD1 CD2 REMARK 470 TYR B 369 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE B 373 CG1 CG2 CD1 REMARK 470 CYS B 377 SG REMARK 470 SER B 378 OG REMARK 470 LYS B 379 CG CD CE NZ REMARK 470 LEU B 402 CG CD1 CD2 REMARK 470 LYS B 407 CG CD CE NZ REMARK 470 LEU B 409 CG CD1 CD2 REMARK 470 SER B 418 OG REMARK 470 GLU B 420 CG CD OE1 OE2 REMARK 470 LEU B 423 CG CD1 CD2 REMARK 470 ASN B 429 CG OD1 ND2 REMARK 470 ARG B 430 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 433 CE1 CE2 CZ REMARK 470 ARG B 441 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 445 CG CD OE1 OE2 REMARK 470 ASN B 447 OD1 ND2 REMARK 470 HIS B 449 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 450 CG CD CE NZ REMARK 470 ASN B 452 CG OD1 ND2 REMARK 470 LEU B 454 CG CD1 CD2 REMARK 470 ARG B 455 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 457 CG1 CG2 REMARK 470 PHE B 461 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 464 CG OD1 OD2 REMARK 470 LEU B 465 CG CD1 CD2 REMARK 470 LYS B 466 CG CD CE NZ REMARK 470 LEU B 470 CG CD1 CD2 REMARK 470 LEU B 481 CG CD1 CD2 REMARK 470 LYS B 485 CG CD CE NZ REMARK 470 SER B 495 OG REMARK 470 TYR B 496 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP B 497 CG OD1 OD2 REMARK 470 VAL B 501 CG1 CG2 REMARK 470 SER B 508 OG REMARK 470 SER B 509 OG REMARK 470 PHE B 510 CG CD1 CD2 CE1 CE2 CZ REMARK 470 MET B 511 SD CE REMARK 470 TYR B 516 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 533 CG CD OE1 OE2 REMARK 470 ARG B 539 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD1 LEU B 291 CA GLY B 437 0.92 REMARK 500 NE2 GLN A 473 OH TYR A 516 1.03 REMARK 500 OG SER B 16 O GLY B 57 1.11 REMARK 500 NH2 ARG A 539 O THR B 551 1.21 REMARK 500 OD1 ASN B 463 NH2 ARG B 529 1.23 REMARK 500 O ASN A 27 O ILE A 29 1.31 REMARK 500 NH2 ARG A 441 OE2 GLU A 553 1.31 REMARK 500 OG SER A 187 SG CYS A 190 1.35 REMARK 500 CB TYR A 111 O MET A 168 1.48 REMARK 500 OG SER A 187 O CYS A 190 1.50 REMARK 500 OE1 GLU B 41 NZ LYS B 43 1.52 REMARK 500 O GLY A 264 OG SER A 267 1.56 REMARK 500 NH1 ARG B 503 OD2 ASP B 543 1.58 REMARK 500 CD2 LEU B 55 CA GLY B 91 1.60 REMARK 500 OG SER A 546 O HOH A 601 1.61 REMARK 500 O ALA A 225 O CYS A 229 1.64 REMARK 500 CD PRO B 68 OH TYR B 90 1.65 REMARK 500 CZ ARG A 539 O THR B 551 1.67 REMARK 500 CB ASP A 331 CG GLN A 334 1.69 REMARK 500 O THR A 367 O PHE A 406 1.69 REMARK 500 O ASP A 7 O ASN A 49 1.70 REMARK 500 OG SER A 475 OG1 THR A 507 1.72 REMARK 500 CG1 VAL B 499 O ARG B 539 1.74 REMARK 500 CD1 LEU B 70 CD GLU B 94 1.77 REMARK 500 NH1 ARG A 539 O THR B 551 1.77 REMARK 500 CG1 VAL A 116 O THR A 164 1.78 REMARK 500 NH1 ARG A 25 O VAL A 211 1.78 REMARK 500 CE1 PHE A 181 O ILE A 195 1.78 REMARK 500 CB ASN B 429 OD1 ASN B 472 1.79 REMARK 500 NH1 ARG B 419 OD1 ASN B 422 1.81 REMARK 500 O LYS A 107 O HOH A 602 1.84 REMARK 500 CD1 LEU B 291 C GLY B 437 1.85 REMARK 500 OD1 ASN A 223 ND2 ASN A 227 1.86 REMARK 500 O PHE B 221 CB ALA B 225 1.86 REMARK 500 O ALA A 439 O VAL A 442 1.86 REMARK 500 O SER B 509 O THR B 512 1.86 REMARK 500 CZ ARG A 25 O VAL A 211 1.86 REMARK 500 CG1 VAL A 166 CD2 TYR A 207 1.86 REMARK 500 NH2 ARG A 25 O VAL A 211 1.87 REMARK 500 CD1 LEU B 70 OE2 GLU B 94 1.90 REMARK 500 O SER B 509 O HOH B 601 1.90 REMARK 500 CG1 VAL B 97 OE1 GLU B 102 1.91 REMARK 500 CG2 THR A 512 NZ LYS A 547 1.92 REMARK 500 OH TYR A 207 SD MET A 220 1.93 REMARK 500 CE2 PHE A 461 CD2 LEU A 502 1.93 REMARK 500 O VAL A 480 O VAL A 501 1.94 REMARK 500 C ASN A 27 O ILE A 29 1.94 REMARK 500 CG PRO A 434 OE1 GLU A 553 1.94 REMARK 500 NH2 ARG A 120 OD1 ASP A 162 1.95 REMARK 500 O SER A 138 OD1 ASP A 141 1.95 REMARK 500 REMARK 500 THIS ENTRY HAS 87 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN A 132 CG2 THR B 108 1545 1.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE A 54 CA ILE A 54 CB -0.210 REMARK 500 GLU A 80 CG GLU A 80 CD -0.124 REMARK 500 CYS A 89 CB CYS A 89 SG -0.108 REMARK 500 VAL A 116 CA VAL A 116 CB -0.127 REMARK 500 ILE A 118 CA ILE A 118 CB -0.156 REMARK 500 CYS A 153 CB CYS A 153 SG -0.145 REMARK 500 GLU A 157 CG GLU A 157 CD -0.091 REMARK 500 CYS A 190 CB CYS A 190 SG -0.164 REMARK 500 TYR A 212 CZ TYR A 212 CE2 -0.080 REMARK 500 PHE A 221 CD1 PHE A 221 CE1 -0.125 REMARK 500 PHE A 221 CE2 PHE A 221 CD2 -0.138 REMARK 500 PRO A 332 CD PRO A 332 N -0.286 REMARK 500 TYR A 408 CD1 TYR A 408 CE1 -0.095 REMARK 500 TYR A 408 CE2 TYR A 408 CD2 -0.106 REMARK 500 ILE A 462 CA ILE A 462 CB -0.183 REMARK 500 VAL A 480 CA VAL A 480 CB -0.155 REMARK 500 TYR A 498 CZ TYR A 498 CE2 -0.088 REMARK 500 TYR A 498 CE2 TYR A 498 CD2 -0.123 REMARK 500 VAL A 501 CA VAL A 501 CB -0.157 REMARK 500 TYR A 520 CZ TYR A 520 CE2 -0.092 REMARK 500 ILE A 522 CA ILE A 522 CB -0.165 REMARK 500 VAL A 537 CB VAL A 537 CG2 -0.146 REMARK 500 TYR A 542 CE1 TYR A 542 CZ -0.090 REMARK 500 CYS B 89 CB CYS B 89 SG -0.113 REMARK 500 TYR B 90 CE2 TYR B 90 CD2 -0.092 REMARK 500 CYS B 130 CB CYS B 130 SG -0.119 REMARK 500 TRP B 515 CB TRP B 515 CG -0.124 REMARK 500 TRP B 515 CG TRP B 515 CD1 -0.087 REMARK 500 PRO B 519 CD PRO B 519 N -0.119 REMARK 500 GLU B 553 CG GLU B 553 CD -0.113 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 11 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 ILE A 22 CB - CA - C ANGL. DEV. = -13.9 DEGREES REMARK 500 ILE A 29 N - CA - C ANGL. DEV. = -18.7 DEGREES REMARK 500 ILE A 45 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 ILE A 54 N - CA - C ANGL. DEV. = -18.0 DEGREES REMARK 500 GLY A 57 N - CA - C ANGL. DEV. = -19.5 DEGREES REMARK 500 GLY A 58 N - CA - C ANGL. DEV. = -20.0 DEGREES REMARK 500 PRO A 84 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 PRO A 84 C - N - CD ANGL. DEV. = -18.9 DEGREES REMARK 500 PHE A 86 N - CA - C ANGL. DEV. = -20.1 DEGREES REMARK 500 GLY A 87 N - CA - C ANGL. DEV. = -24.3 DEGREES REMARK 500 ILE A 88 CB - CA - C ANGL. DEV. = -12.1 DEGREES REMARK 500 CYS A 113 N - CA - C ANGL. DEV. = -21.2 DEGREES REMARK 500 VAL A 116 CB - CA - C ANGL. DEV. = -14.6 DEGREES REMARK 500 ILE A 118 CB - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 ILE A 124 N - CA - C ANGL. DEV. = -16.4 DEGREES REMARK 500 LEU A 142 CA - CB - CG ANGL. DEV. = -16.6 DEGREES REMARK 500 VAL A 166 N - CA - C ANGL. DEV. = -18.8 DEGREES REMARK 500 TRP A 167 N - CA - C ANGL. DEV. = -29.7 DEGREES REMARK 500 PRO A 178 C - N - CD ANGL. DEV. = -14.4 DEGREES REMARK 500 LEU A 191 N - CA - C ANGL. DEV. = 17.7 DEGREES REMARK 500 CYS A 193 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 TYR A 196 N - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 ILE A 202 CB - CA - C ANGL. DEV. = -16.0 DEGREES REMARK 500 GLY A 204 N - CA - C ANGL. DEV. = 16.9 DEGREES REMARK 500 LEU A 243 CA - CB - CG ANGL. DEV. = -20.4 DEGREES REMARK 500 GLU A 244 N - CA - C ANGL. DEV. = -18.4 DEGREES REMARK 500 SER A 267 N - CA - CB ANGL. DEV. = -9.3 DEGREES REMARK 500 SER A 267 N - CA - C ANGL. DEV. = 16.2 DEGREES REMARK 500 LYS A 279 N - CA - C ANGL. DEV. = 22.2 DEGREES REMARK 500 ILE A 285 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 LEU A 292 CA - CB - CG ANGL. DEV. = -13.9 DEGREES REMARK 500 LEU A 292 CB - CG - CD1 ANGL. DEV. = -10.3 DEGREES REMARK 500 PRO A 309 C - N - CD ANGL. DEV. = -17.7 DEGREES REMARK 500 SER A 319 N - CA - C ANGL. DEV. = 17.8 DEGREES REMARK 500 VAL A 329 CB - CA - C ANGL. DEV. = -15.0 DEGREES REMARK 500 PRO A 332 C - N - CD ANGL. DEV. = -17.6 DEGREES REMARK 500 PRO A 332 CA - N - CD ANGL. DEV. = 15.6 DEGREES REMARK 500 PRO A 332 N - CA - CB ANGL. DEV. = -13.5 DEGREES REMARK 500 ILE A 338 CB - CA - C ANGL. DEV. = -14.2 DEGREES REMARK 500 LEU A 342 CA - CB - CG ANGL. DEV. = -17.2 DEGREES REMARK 500 ASN A 353 N - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 LEU A 364 CA - CB - CG ANGL. DEV. = -21.9 DEGREES REMARK 500 TYR A 369 CB - CA - C ANGL. DEV. = -15.7 DEGREES REMARK 500 PRO A 370 C - N - CD ANGL. DEV. = -13.4 DEGREES REMARK 500 ASP A 371 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 PRO A 405 C - N - CD ANGL. DEV. = -15.1 DEGREES REMARK 500 LEU A 421 CB - CG - CD2 ANGL. DEV. = -16.5 DEGREES REMARK 500 PRO A 436 C - N - CD ANGL. DEV. = -19.9 DEGREES REMARK 500 VAL A 442 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 81 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 8 -54.35 -126.44 REMARK 500 ASP A 47 6.37 83.61 REMARK 500 GLU A 80 -125.04 44.92 REMARK 500 LYS A 81 -46.08 -162.09 REMARK 500 CYS A 89 -129.67 15.02 REMARK 500 MET A 99 77.92 -157.74 REMARK 500 TYR A 111 -127.03 56.08 REMARK 500 ILE A 127 133.27 -39.67 REMARK 500 SER A 136 -81.00 104.05 REMARK 500 SER A 137 -53.18 169.68 REMARK 500 LEU A 148 -162.40 -170.04 REMARK 500 MET A 149 -150.85 173.88 REMARK 500 CYS A 154 -53.14 69.19 REMARK 500 LYS A 160 -52.89 74.16 REMARK 500 GLU A 179 -140.12 53.12 REMARK 500 CYS A 193 -126.83 61.82 REMARK 500 VAL A 211 179.96 178.69 REMARK 500 GLN A 234 -144.13 -103.04 REMARK 500 PHE A 278 43.18 -162.06 REMARK 500 LYS A 294 -115.54 55.41 REMARK 500 ASN A 295 31.20 -88.59 REMARK 500 ALA A 318 46.53 -155.36 REMARK 500 LEU A 368 -107.89 -95.80 REMARK 500 PHE A 403 71.74 -152.07 REMARK 500 TYR A 408 68.48 -151.88 REMARK 500 PRO A 432 151.63 -47.20 REMARK 500 GLN A 476 107.30 -163.66 REMARK 500 LYS A 547 -144.38 54.36 REMARK 500 PRO A 549 54.09 37.17 REMARK 500 ILE B 31 -167.92 -163.40 REMARK 500 LYS B 82 26.69 81.19 REMARK 500 CYS B 89 -128.61 19.22 REMARK 500 GLU B 110 -156.93 -166.87 REMARK 500 ARG B 120 -144.77 174.71 REMARK 500 PHE B 133 56.86 -101.39 REMARK 500 ASP B 135 -49.28 76.51 REMARK 500 SER B 136 95.83 168.09 REMARK 500 LYS B 160 -40.20 70.06 REMARK 500 ILE B 163 -173.65 170.68 REMARK 500 PRO B 178 -116.59 -65.21 REMARK 500 CYS B 190 8.49 -160.63 REMARK 500 LEU B 191 -117.17 29.16 REMARK 500 CYS B 193 15.72 -153.24 REMARK 500 TYR B 200 22.78 -141.96 REMARK 500 ASP B 288 -167.40 -179.51 REMARK 500 ASN B 289 -74.67 79.37 REMARK 500 LEU B 291 -109.25 -176.31 REMARK 500 LEU B 292 155.89 45.71 REMARK 500 ARG B 293 -139.80 -71.40 REMARK 500 LYS B 294 -123.27 -106.63 REMARK 500 REMARK 500 THIS ENTRY HAS 58 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 134 ASP A 135 -146.32 REMARK 500 ASP A 135 SER A 136 147.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WIN RELATED DB: PDB REMARK 900 4WIN CONTAINS ONLY THE GATASE DOMAIN OF THIS ENTRY. REMARK 900 RELATED ID: 4WIO RELATED DB: PDB REMARK 900 4WIO CONTAINS THE C89A MUTANT PROTEIN IN COMPLEX WITH GLUTAMINE. DBREF 4WIM A 2 555 UNP Q8IJR9 Q8IJR9_PLAF7 2 555 DBREF 4WIM B 2 555 UNP Q8IJR9 Q8IJR9_PLAF7 2 555 SEQADV 4WIM MET A -12 UNP Q8IJR9 INITIATING METHIONINE SEQADV 4WIM ARG A -11 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIM GLY A -10 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIM SER A -9 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIM HIS A -8 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIM HIS A -7 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIM HIS A -6 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIM HIS A -5 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIM HIS A -4 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIM HIS A -3 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIM GLY A -2 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIM SER A -1 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIM MET A 0 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIM ALA A 1 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIM MET B -12 UNP Q8IJR9 INITIATING METHIONINE SEQADV 4WIM ARG B -11 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIM GLY B -10 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIM SER B -9 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIM HIS B -8 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIM HIS B -7 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIM HIS B -6 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIM HIS B -5 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIM HIS B -4 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIM HIS B -3 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIM GLY B -2 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIM SER B -1 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIM MET B 0 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIM ALA B 1 UNP Q8IJR9 EXPRESSION TAG SEQRES 1 A 568 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 A 568 ALA GLU GLY GLU GLU TYR ASP LYS ILE LEU VAL LEU ASN SEQRES 3 A 568 PHE GLY SER GLN TYR PHE HIS LEU ILE VAL LYS ARG LEU SEQRES 4 A 568 ASN ASN ILE LYS ILE PHE SER GLU THR LYS ASP TYR GLY SEQRES 5 A 568 VAL GLU LEU LYS ASP ILE LYS ASP MET ASN ILE LYS GLY SEQRES 6 A 568 VAL ILE LEU SER GLY GLY PRO TYR SER VAL THR GLU ALA SEQRES 7 A 568 GLY SER PRO HIS LEU LYS LYS GLU VAL PHE GLU TYR PHE SEQRES 8 A 568 LEU GLU LYS LYS ILE PRO ILE PHE GLY ILE CYS TYR GLY SEQRES 9 A 568 MET GLN GLU ILE ALA VAL GLN MET ASN GLY GLU VAL LYS SEQRES 10 A 568 LYS SER LYS THR SER GLU TYR GLY CYS THR ASP VAL ASN SEQRES 11 A 568 ILE LEU ARG ASN ASP ASN ILE ASN ASN ILE THR TYR CYS SEQRES 12 A 568 ARG ASN PHE GLY ASP SER SER SER ALA MET ASP LEU TYR SEQRES 13 A 568 SER ASN TYR LYS LEU MET ASN GLU THR CYS CYS LEU PHE SEQRES 14 A 568 GLU ASN ILE LYS SER ASP ILE THR THR VAL TRP MET ASN SEQRES 15 A 568 HIS ASN ASP GLU VAL THR LYS ILE PRO GLU ASN PHE TYR SEQRES 16 A 568 LEU VAL SER SER SER GLU ASN CYS LEU ILE CYS SER ILE SEQRES 17 A 568 TYR ASN LYS GLU TYR ASN ILE TYR GLY VAL GLN TYR HIS SEQRES 18 A 568 PRO GLU VAL TYR GLU SER LEU ASP GLY GLU LEU MET PHE SEQRES 19 A 568 TYR ASN PHE ALA TYR ASN ILE CYS LYS CYS LYS LYS GLN SEQRES 20 A 568 PHE ASP PRO ILE ARG TYR HIS GLU LEU GLU LEU LYS ASN SEQRES 21 A 568 ILE GLU LYS TYR LYS HIS ASP HIS TYR VAL ILE ALA ALA SEQRES 22 A 568 MET SER GLY GLY ILE ASP SER THR VAL ALA ALA ALA TYR SEQRES 23 A 568 THR HIS LYS ILE PHE LYS GLU ARG PHE PHE GLY ILE PHE SEQRES 24 A 568 ILE ASP ASN GLY LEU LEU ARG LYS ASN GLU ALA GLU ASN SEQRES 25 A 568 VAL TYR THR PHE LEU LYS SER THR PHE PRO ASP MET ASN SEQRES 26 A 568 ILE THR LYS ILE ASP ALA SER GLU ASN PHE LEU SER ASN SEQRES 27 A 568 LEU GLN GLY VAL THR ASP PRO GLU GLN LYS ARG LYS ILE SEQRES 28 A 568 ILE GLY LYS LEU PHE ILE GLU GLU PHE GLU LYS ALA VAL SEQRES 29 A 568 ASN ASN ILE ASP ILE ASP ILE ASN LYS THR PHE LEU LEU SEQRES 30 A 568 GLN GLY THR LEU TYR PRO ASP ILE ILE GLU SER LYS CYS SEQRES 31 A 568 SER LYS ASN LEU SER ASP THR ILE LYS THR HIS HIS ASN SEQRES 32 A 568 VAL GLY GLY LEU PRO LYS ASN LEU LYS PHE LYS LEU PHE SEQRES 33 A 568 GLU PRO PHE LYS TYR LEU PHE LYS ASP ASP VAL LYS THR SEQRES 34 A 568 LEU SER ARG GLU LEU ASN LEU PRO GLU GLU ILE THR ASN SEQRES 35 A 568 ARG HIS PRO PHE PRO GLY PRO GLY LEU ALA ILE ARG VAL SEQRES 36 A 568 ILE GLY GLU ILE ASN LYS HIS LYS LEU ASN ILE LEU ARG SEQRES 37 A 568 GLU VAL ASP ASP ILE PHE ILE ASN ASP LEU LYS GLN TYR SEQRES 38 A 568 GLY LEU TYR ASN GLN ILE SER GLN ALA PHE ALA VAL LEU SEQRES 39 A 568 LEU SER SER LYS SER VAL GLY VAL ARG GLY ASP ALA ARG SEQRES 40 A 568 SER TYR ASP TYR VAL CYS VAL LEU ARG ALA VAL LYS THR SEQRES 41 A 568 SER SER PHE MET THR ALA ASN TRP TYR GLN ILE PRO TYR SEQRES 42 A 568 ASP ILE LEU ASP LYS ILE THR THR ARG ILE LEU SER GLU SEQRES 43 A 568 VAL LYS GLY VAL ASN ARG ILE LEU TYR ASP VAL SER SER SEQRES 44 A 568 LYS PRO PRO ALA THR ILE GLU PHE GLU SEQRES 1 B 568 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 B 568 ALA GLU GLY GLU GLU TYR ASP LYS ILE LEU VAL LEU ASN SEQRES 3 B 568 PHE GLY SER GLN TYR PHE HIS LEU ILE VAL LYS ARG LEU SEQRES 4 B 568 ASN ASN ILE LYS ILE PHE SER GLU THR LYS ASP TYR GLY SEQRES 5 B 568 VAL GLU LEU LYS ASP ILE LYS ASP MET ASN ILE LYS GLY SEQRES 6 B 568 VAL ILE LEU SER GLY GLY PRO TYR SER VAL THR GLU ALA SEQRES 7 B 568 GLY SER PRO HIS LEU LYS LYS GLU VAL PHE GLU TYR PHE SEQRES 8 B 568 LEU GLU LYS LYS ILE PRO ILE PHE GLY ILE CYS TYR GLY SEQRES 9 B 568 MET GLN GLU ILE ALA VAL GLN MET ASN GLY GLU VAL LYS SEQRES 10 B 568 LYS SER LYS THR SER GLU TYR GLY CYS THR ASP VAL ASN SEQRES 11 B 568 ILE LEU ARG ASN ASP ASN ILE ASN ASN ILE THR TYR CYS SEQRES 12 B 568 ARG ASN PHE GLY ASP SER SER SER ALA MET ASP LEU TYR SEQRES 13 B 568 SER ASN TYR LYS LEU MET ASN GLU THR CYS CYS LEU PHE SEQRES 14 B 568 GLU ASN ILE LYS SER ASP ILE THR THR VAL TRP MET ASN SEQRES 15 B 568 HIS ASN ASP GLU VAL THR LYS ILE PRO GLU ASN PHE TYR SEQRES 16 B 568 LEU VAL SER SER SER GLU ASN CYS LEU ILE CYS SER ILE SEQRES 17 B 568 TYR ASN LYS GLU TYR ASN ILE TYR GLY VAL GLN TYR HIS SEQRES 18 B 568 PRO GLU VAL TYR GLU SER LEU ASP GLY GLU LEU MET PHE SEQRES 19 B 568 TYR ASN PHE ALA TYR ASN ILE CYS LYS CYS LYS LYS GLN SEQRES 20 B 568 PHE ASP PRO ILE ARG TYR HIS GLU LEU GLU LEU LYS ASN SEQRES 21 B 568 ILE GLU LYS TYR LYS HIS ASP HIS TYR VAL ILE ALA ALA SEQRES 22 B 568 MET SER GLY GLY ILE ASP SER THR VAL ALA ALA ALA TYR SEQRES 23 B 568 THR HIS LYS ILE PHE LYS GLU ARG PHE PHE GLY ILE PHE SEQRES 24 B 568 ILE ASP ASN GLY LEU LEU ARG LYS ASN GLU ALA GLU ASN SEQRES 25 B 568 VAL TYR THR PHE LEU LYS SER THR PHE PRO ASP MET ASN SEQRES 26 B 568 ILE THR LYS ILE ASP ALA SER GLU ASN PHE LEU SER ASN SEQRES 27 B 568 LEU GLN GLY VAL THR ASP PRO GLU GLN LYS ARG LYS ILE SEQRES 28 B 568 ILE GLY LYS LEU PHE ILE GLU GLU PHE GLU LYS ALA VAL SEQRES 29 B 568 ASN ASN ILE ASP ILE ASP ILE ASN LYS THR PHE LEU LEU SEQRES 30 B 568 GLN GLY THR LEU TYR PRO ASP ILE ILE GLU SER LYS CYS SEQRES 31 B 568 SER LYS ASN LEU SER ASP THR ILE LYS THR HIS HIS ASN SEQRES 32 B 568 VAL GLY GLY LEU PRO LYS ASN LEU LYS PHE LYS LEU PHE SEQRES 33 B 568 GLU PRO PHE LYS TYR LEU PHE LYS ASP ASP VAL LYS THR SEQRES 34 B 568 LEU SER ARG GLU LEU ASN LEU PRO GLU GLU ILE THR ASN SEQRES 35 B 568 ARG HIS PRO PHE PRO GLY PRO GLY LEU ALA ILE ARG VAL SEQRES 36 B 568 ILE GLY GLU ILE ASN LYS HIS LYS LEU ASN ILE LEU ARG SEQRES 37 B 568 GLU VAL ASP ASP ILE PHE ILE ASN ASP LEU LYS GLN TYR SEQRES 38 B 568 GLY LEU TYR ASN GLN ILE SER GLN ALA PHE ALA VAL LEU SEQRES 39 B 568 LEU SER SER LYS SER VAL GLY VAL ARG GLY ASP ALA ARG SEQRES 40 B 568 SER TYR ASP TYR VAL CYS VAL LEU ARG ALA VAL LYS THR SEQRES 41 B 568 SER SER PHE MET THR ALA ASN TRP TYR GLN ILE PRO TYR SEQRES 42 B 568 ASP ILE LEU ASP LYS ILE THR THR ARG ILE LEU SER GLU SEQRES 43 B 568 VAL LYS GLY VAL ASN ARG ILE LEU TYR ASP VAL SER SER SEQRES 44 B 568 LYS PRO PRO ALA THR ILE GLU PHE GLU FORMUL 3 HOH *23(H2 O) HELIX 1 AA1 TYR A 18 ILE A 29 1 12 HELIX 2 AA2 LYS A 71 GLU A 80 1 10 HELIX 3 AA3 ILE A 88 GLN A 98 1 11 HELIX 4 AA4 ASN A 121 ILE A 127 1 7 HELIX 5 AA5 ALA A 139 TYR A 146 1 8 HELIX 6 AA6 SER A 214 CYS A 229 1 16 HELIX 7 AA7 PRO A 237 LYS A 250 1 14 HELIX 8 AA8 GLY A 264 LYS A 276 1 13 HELIX 9 AA9 ASN A 295 PHE A 308 1 14 HELIX 10 AB1 ALA A 318 LEU A 326 1 9 HELIX 11 AB2 PRO A 332 ASN A 352 1 21 HELIX 12 AB3 TYR A 369 SER A 375 1 7 HELIX 13 AB4 PHE A 410 LEU A 421 1 12 HELIX 14 AB5 PRO A 424 ASN A 429 1 6 HELIX 15 AB6 PRO A 436 ILE A 440 5 5 HELIX 16 AB7 ASN A 447 TYR A 468 1 22 HELIX 17 AB8 PRO A 519 VAL A 534 1 16 HELIX 18 AB9 GLN B 17 ASN B 28 1 12 HELIX 19 AC1 LYS B 71 LYS B 81 1 11 HELIX 20 AC2 CYS B 89 MET B 99 1 11 HELIX 21 AC3 ASN B 121 ASN B 126 1 6 HELIX 22 AC4 CYS B 153 GLU B 157 5 5 HELIX 23 AC5 SER B 214 ASN B 227 1 14 HELIX 24 AC6 ASP B 236 GLU B 249 1 14 HELIX 25 AC7 GLY B 264 PHE B 278 1 15 HELIX 26 AC8 LYS B 294 PHE B 308 1 15 HELIX 27 AC9 SER B 319 ASN B 325 1 7 HELIX 28 AD1 ASP B 331 ILE B 354 1 24 HELIX 29 AD2 TYR B 369 LYS B 379 1 11 HELIX 30 AD3 PHE B 410 ARG B 419 1 10 HELIX 31 AD4 ASN B 447 GLY B 469 1 23 HELIX 32 AD5 PRO B 519 VAL B 534 1 16 SHEET 1 AA1 3 THR A 35 ASP A 37 0 SHEET 2 AA1 3 ILE A 9 ASN A 13 1 N ASN A 13 O LYS A 36 SHEET 3 AA1 3 GLY A 52 SER A 56 1 O ILE A 54 N LEU A 10 SHEET 1 AA2 2 GLU A 102 LYS A 105 0 SHEET 2 AA2 2 ASP A 172 LYS A 176 -1 O GLU A 173 N LYS A 104 SHEET 1 AA3 3 ILE A 163 MET A 168 0 SHEET 2 AA3 3 GLY A 112 ILE A 118 -1 N VAL A 116 O THR A 164 SHEET 3 AA3 3 SER A 185 SER A 186 -1 O SER A 186 N ASN A 117 SHEET 1 AA4 3 TYR A 182 LEU A 183 0 SHEET 2 AA4 3 ILE A 195 ASN A 197 -1 O TYR A 196 N TYR A 182 SHEET 3 AA4 3 ILE A 202 GLY A 204 -1 O ILE A 202 N ASN A 197 SHEET 1 AA5 2 VAL A 257 ALA A 260 0 SHEET 2 AA5 2 PHE A 282 ILE A 285 1 O PHE A 283 N VAL A 257 SHEET 1 AA6 6 GLN A 476 LEU A 482 0 SHEET 2 AA6 6 VAL A 499 VAL A 505 -1 O VAL A 501 N VAL A 480 SHEET 3 AA6 6 ARG A 539 ASP A 543 1 O ASP A 543 N LEU A 502 SHEET 4 AA6 6 ILE B 540 ASP B 543 -1 O TYR B 542 N TYR A 542 SHEET 5 AA6 6 VAL B 499 SER B 509 1 N CYS B 500 O LEU B 541 SHEET 6 AA6 6 GLN B 476 LEU B 482 -1 N LEU B 482 O VAL B 499 SHEET 1 AA7 6 GLN A 476 LEU A 482 0 SHEET 2 AA7 6 VAL A 499 VAL A 505 -1 O VAL A 501 N VAL A 480 SHEET 3 AA7 6 ARG A 539 ASP A 543 1 O ASP A 543 N LEU A 502 SHEET 4 AA7 6 ILE B 540 ASP B 543 -1 O TYR B 542 N TYR A 542 SHEET 5 AA7 6 VAL B 499 SER B 509 1 N CYS B 500 O LEU B 541 SHEET 6 AA7 6 THR B 512 ASN B 514 -1 O THR B 512 N SER B 509 SHEET 1 AA8 2 LEU B 10 VAL B 11 0 SHEET 2 AA8 2 VAL B 53 ILE B 54 1 O ILE B 54 N LEU B 10 SHEET 1 AA9 3 GLY B 87 ILE B 88 0 SHEET 2 AA9 3 TYR B 203 VAL B 205 1 O TYR B 203 N GLY B 87 SHEET 3 AA9 3 ILE B 195 TYR B 196 -1 N ILE B 195 O GLY B 204 SHEET 1 AB1 3 ASN B 117 ILE B 118 0 SHEET 2 AB1 3 SER B 185 SER B 187 -1 O SER B 186 N ASN B 117 SHEET 3 AB1 3 LEU B 191 ILE B 192 -1 N LEU B 191 O SER B 187 SHEET 1 AB2 2 TRP B 167 MET B 168 0 SHEET 2 AB2 2 TYR B 207 HIS B 208 -1 O HIS B 208 N TRP B 167 CISPEP 1 PRO A 548 PRO A 549 0 -16.75 CISPEP 2 LYS B 547 PRO B 548 0 -5.29 CISPEP 3 PRO B 548 PRO B 549 0 -0.05 CRYST1 43.453 68.548 102.080 101.11 99.17 93.71 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023013 0.001491 0.004112 0.00000 SCALE2 0.000000 0.014619 0.003079 0.00000 SCALE3 0.000000 0.000000 0.010141 0.00000