HEADER TRANSFERASE/TRANSFERASE INHIBITOR 29-SEP-14 4WJC OBSLTE 30-DEC-15 4WJC 5F0A TITLE CRYSTAL STRUCTURE OF PVX_084705 WITH BOUND 1-TERT-BUTYL-3-(3- TITLE 2 CHLOROPHENOXY)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CGMP-DEPENDENT PROTEIN KINASE, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX; SOURCE 3 ORGANISM_TAXID: 126793; SOURCE 4 STRAIN: SALVADOR I; SOURCE 5 GENE: PVX_084705; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PFBOH-MHL KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KINASE, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,A.K.WERNIMONT,H.HE,A.SEITOVA,P.LOPPNAU,L.D.SIBLEY, AUTHOR 2 S.GRASLUND,A.HUTCHINSON,C.BOUNTRA,J.WEIGELT,A.M.EDWARDS, AUTHOR 3 C.H.ARROWSMITH,R.HUI,M.EL BAKKOURI,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 4 (SGC) REVDAT 2 30-DEC-15 4WJC 1 OBSLTE REVDAT 1 29-OCT-14 4WJC 0 JRNL AUTH J.R.WALKER,A.K.WERNIMONT,H.HE,A.SEITOVA,P.LOPPNAU, JRNL AUTH 2 L.D.SIBLEY,S.GRASLUND,A.HUTCHINSON,C.BOUNTRA,J.WEIGELT, JRNL AUTH 3 A.M.EDWARDS,C.H.ARROWSMITH,R.HUI,M.EL BAKKOURI, JRNL AUTH 4 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF PVX_084705 WITH BOUND INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 41766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2231 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2997 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.61 REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6295 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 169 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.12000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -2.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.39000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.351 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.263 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.241 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.329 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6466 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6116 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8751 ; 1.129 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13995 ; 0.702 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 815 ; 5.097 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 297 ;36.718 ;24.343 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1110 ;14.711 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;16.735 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 994 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7498 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1520 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3251 ; 2.752 ; 5.613 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3250 ; 2.752 ; 5.611 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4060 ; 4.543 ; 8.405 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 901 REMARK 3 ORIGIN FOR THE GROUP (A): -31.2715 48.3596 19.5210 REMARK 3 T TENSOR REMARK 3 T11: 0.2871 T22: 0.0402 REMARK 3 T33: 0.0413 T12: 0.0137 REMARK 3 T13: -0.0186 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 0.2062 L22: 0.1138 REMARK 3 L33: 0.2167 L12: 0.1121 REMARK 3 L13: -0.0519 L23: -0.0471 REMARK 3 S TENSOR REMARK 3 S11: 0.0939 S12: -0.0297 S13: -0.0393 REMARK 3 S21: 0.0119 S22: -0.0384 S23: -0.0407 REMARK 3 S31: -0.0139 S32: 0.0878 S33: -0.0555 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4WJC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000203914. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000, HKL REMARK 200 DATA SCALING SOFTWARE : HKL-3000, HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45908 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.84200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4MYI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% TACSIMATE, 0.1 M HEPES PH 7.0, 10% REMARK 280 PEG 5000 MME, 16% SPERMIDINE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 96.08600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.72600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 96.08600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 58.72600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 72300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -5.37050 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 67.48565 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 6 REMARK 465 ASN A 7 REMARK 465 LYS A 8 REMARK 465 ASN A 15 REMARK 465 ASP A 16 REMARK 465 ASP A 17 REMARK 465 PHE A 18 REMARK 465 SER A 19 REMARK 465 ASP A 319 REMARK 465 GLU A 817 REMARK 465 ASP A 818 REMARK 465 ILE A 819 REMARK 465 ASP A 820 REMARK 465 ILE A 821 REMARK 465 LYS A 822 REMARK 465 GLN A 823 REMARK 465 ILE A 824 REMARK 465 GLU A 825 REMARK 465 GLU A 826 REMARK 465 GLU A 827 REMARK 465 ASP A 828 REMARK 465 ALA A 829 REMARK 465 LEU A 830 REMARK 465 ASN A 831 REMARK 465 GLU A 832 REMARK 465 GLY A 833 REMARK 465 GLU A 834 REMARK 465 PRO A 835 REMARK 465 LEU A 836 REMARK 465 ASP A 837 REMARK 465 GLY A 838 REMARK 465 ASP A 839 REMARK 465 ASP A 840 REMARK 465 SER A 841 REMARK 465 TRP A 842 REMARK 465 ASP A 843 REMARK 465 VAL A 844 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 9 CG CD CE NZ REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 ILE A 12 CG1 CG2 CD1 REMARK 470 ASP A 22 CG OD1 OD2 REMARK 470 GLU A 33 CG CD OE1 OE2 REMARK 470 LYS A 47 CD CE NZ REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 ILE A 79 CD1 REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 GLN A 81 CG CD OE1 NE2 REMARK 470 LYS A 84 CG CD CE NZ REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 VAL A 100 CG1 CG2 REMARK 470 ASP A 102 CG OD1 OD2 REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 GLN A 124 CG CD OE1 NE2 REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 THR A 133 OG1 CG2 REMARK 470 LYS A 198 CE NZ REMARK 470 GLU A 211 CG CD OE1 OE2 REMARK 470 LYS A 213 CG CD CE NZ REMARK 470 ILE A 223 CG1 CG2 CD1 REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 LYS A 261 CE NZ REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 470 LYS A 318 CG CD CE NZ REMARK 470 LYS A 320 CG CD CE NZ REMARK 470 LYS A 322 CG CD CE NZ REMARK 470 LYS A 363 CG CD CE NZ REMARK 470 ARG A 431 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 457 CG CD OE1 OE2 REMARK 470 ASN A 461 CG OD1 ND2 REMARK 470 LYS A 463 CG CD CE NZ REMARK 470 ARG A 466 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 470 CD CE NZ REMARK 470 LYS A 492 CG CD CE NZ REMARK 470 LYS A 528 CG CD CE NZ REMARK 470 GLU A 535 CG CD OE1 OE2 REMARK 470 THR A 536 OG1 CG2 REMARK 470 LYS A 554 CG CD CE NZ REMARK 470 SER A 566 OG REMARK 470 LYS A 567 CG CD CE NZ REMARK 470 ARG A 568 CG CD NE CZ NH1 NH2 REMARK 470 SER A 569 OG REMARK 470 ILE A 570 CG1 CG2 CD1 REMARK 470 ILE A 571 CG2 CD1 REMARK 470 SER A 572 OG REMARK 470 LEU A 573 CG CD1 CD2 REMARK 470 GLN A 575 CD OE1 NE2 REMARK 470 GLN A 576 CG CD OE1 NE2 REMARK 470 ASN A 577 CG OD1 ND2 REMARK 470 ARG A 599 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 602 CG CD CE NZ REMARK 470 ASN A 605 CG OD1 ND2 REMARK 470 GLU A 805 CD OE1 OE2 REMARK 470 LYS A 811 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 78 -72.21 -105.98 REMARK 500 VAL A 105 -68.23 -106.77 REMARK 500 SER A 126 -72.77 -77.22 REMARK 500 GLU A 132 -77.03 -63.99 REMARK 500 ASP A 339 -114.65 46.57 REMARK 500 ASN A 461 35.61 37.88 REMARK 500 LYS A 470 125.72 -35.13 REMARK 500 ASN A 471 -2.24 75.14 REMARK 500 GLU A 612 154.72 -46.71 REMARK 500 ARG A 656 -10.93 74.57 REMARK 500 ASP A 675 89.93 59.66 REMARK 500 LEU A 767 31.60 -94.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1FB A 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MYI RELATED DB: PDB REMARK 900 UNLIGANDED STRUCTURE DBREF 4WJC A 1 846 UNP A5K0N4 A5K0N4_PLAVS 1 846 SEQADV 4WJC GLY A 0 UNP A5K0N4 EXPRESSION TAG SEQRES 1 A 847 GLY MET ARG CYS ASN GLU ARG ASN LYS LYS LYS ALA ILE SEQRES 2 A 847 PHE SER ASN ASP ASP PHE SER GLY GLU ASP THR LEU MET SEQRES 3 A 847 GLU ASP HIS LEU GLN LEU ARG GLU LYS LEU SER GLU ASP SEQRES 4 A 847 ILE GLU MET ILE LYS ALA SER LEU LYS ASN ASN LEU VAL SEQRES 5 A 847 CYS SER THR LEU ASN ASP ASN GLU ILE LEU THR LEU SER SEQRES 6 A 847 ASN TYR MET GLN PHE PHE VAL PHE LYS GLY GLY ASP LEU SEQRES 7 A 847 VAL ILE LYS GLN GLY GLU LYS GLY SER TYR PHE PHE ILE SEQRES 8 A 847 ILE ASN SER GLY LYS PHE ASP VAL TYR VAL ASN ASP LYS SEQRES 9 A 847 LYS VAL LYS SER MET GLY LYS GLY SER SER PHE GLY GLU SEQRES 10 A 847 ALA ALA LEU ILE HIS ASN THR GLN ARG SER ALA THR ILE SEQRES 11 A 847 MET ALA GLU THR ASP GLY THR LEU TRP GLY VAL GLN ARG SEQRES 12 A 847 SER THR PHE ARG ALA THR LEU LYS GLN LEU SER ASN ARG SEQRES 13 A 847 ASN PHE ASN GLU ASN ARG SER PHE ILE ASP SER VAL SER SEQRES 14 A 847 VAL PHE ASP MET LEU THR GLU ALA GLN LYS ASN MET ILE SEQRES 15 A 847 THR ASN ALA CYS VAL ILE GLN MET PHE LYS PRO GLY GLU SEQRES 16 A 847 THR ILE VAL LYS GLN GLY ASP TYR GLY ASP VAL LEU PHE SEQRES 17 A 847 ILE LEU LYS GLU GLY LYS ALA THR VAL PHE ILE ASN ASP SEQRES 18 A 847 LYS GLU ILE ARG VAL LEU ASN LYS GLY SER TYR PHE GLY SEQRES 19 A 847 GLU ARG ALA LEU LEU TYR ASP GLU PRO ARG SER ALA THR SEQRES 20 A 847 ILE ILE ALA LYS GLU PRO THR ALA CYS ALA SER ILE CYS SEQRES 21 A 847 ARG LYS LEU LEU ASN ILE VAL LEU GLY ASN LEU GLN VAL SEQRES 22 A 847 VAL LEU PHE ARG ASN ILE MET THR GLU ALA LEU GLN GLN SEQRES 23 A 847 SER GLU ILE PHE ARG GLN PHE SER ALA GLU GLN LEU ASN SEQRES 24 A 847 ASP LEU ALA ASP THR ALA ILE VAL ARG ASP TYR PRO ALA SEQRES 25 A 847 ASN TYR HIS ILE LEU HIS LYS ASP LYS VAL LYS SER VAL SEQRES 26 A 847 LYS TYR LEU ILE VAL LEU GLU GLY LYS VAL GLU LEU PHE SEQRES 27 A 847 LEU ASP ASP GLU SER ILE GLY ILE LEU THR ARG GLY LYS SEQRES 28 A 847 SER PHE GLY ASP GLN TYR VAL LEU ASN GLN LYS GLN LYS SEQRES 29 A 847 PHE ARG HIS THR VAL LYS SER LEU ASP VAL CYS LYS ILE SEQRES 30 A 847 ALA LEU ILE THR GLU SER CYS LEU ALA ASP CYS LEU GLY SEQRES 31 A 847 ASP ASN ASN ILE ASP ALA SER ILE ASP HIS ASN ASN LYS SEQRES 32 A 847 LYS SER ILE ILE LYS LYS MET TYR ILE PHE ARG TYR LEU SEQRES 33 A 847 SER GLU GLN GLN CYS ASN LEU LEU ILE GLU ALA PHE ARG SEQRES 34 A 847 THR THR ARG TYR GLU GLU GLY ASP TYR ILE ILE GLN GLU SEQRES 35 A 847 GLY GLU VAL GLY SER ARG PHE TYR ILE ILE LYS ASN GLY SEQRES 36 A 847 GLU VAL GLU VAL THR LYS ASN GLY LYS ARG LEU ARG THR SEQRES 37 A 847 LEU GLY LYS ASN ASP TYR PHE GLY GLU ARG ALA LEU LEU SEQRES 38 A 847 TYR ASP GLU PRO ARG THR ALA SER ILE ILE SER LYS ALA SEQRES 39 A 847 THR SER VAL GLU CYS TRP PHE VAL ASP LYS SER VAL PHE SEQRES 40 A 847 LEU GLN ILE ILE GLN GLY PRO MET LEU THR HIS LEU GLU SEQRES 41 A 847 GLU ARG ILE LYS MET GLN ASP THR LYS VAL GLU MET HIS SEQRES 42 A 847 GLU LEU GLU THR GLU ARG ILE ILE GLY ARG GLY THR PHE SEQRES 43 A 847 GLY THR VAL LYS LEU VAL HIS HIS LYS PRO THR GLN ILE SEQRES 44 A 847 ARG TYR ALA LEU LYS CYS VAL SER LYS ARG SER ILE ILE SEQRES 45 A 847 SER LEU ASN GLN GLN ASN ASN ILE LYS LEU GLU ARG GLU SEQRES 46 A 847 ILE THR ALA GLU ASN ASP HIS PRO PHE ILE ILE ARG LEU SEQRES 47 A 847 VAL ARG THR PHE LYS ASP SER ASN CYS PHE TYR PHE LEU SEQRES 48 A 847 THR GLU LEU VAL THR GLY GLY GLU LEU TYR ASP ALA ILE SEQRES 49 A 847 ARG LYS LEU GLY LEU LEU SER LYS PRO GLN ALA GLN PHE SEQRES 50 A 847 TYR LEU GLY SER ILE ILE LEU ALA ILE GLU TYR LEU HIS SEQRES 51 A 847 GLU ARG ASN ILE VAL TYR ARG ASP LEU LYS PRO GLU ASN SEQRES 52 A 847 ILE LEU LEU ASP LYS GLN GLY TYR VAL LYS LEU ILE ASP SEQRES 53 A 847 PHE GLY CYS ALA LYS LYS ILE GLN GLY ARG ALA TYR THR SEQRES 54 A 847 LEU VAL GLY THR PRO HIS TYR MET ALA PRO GLU VAL ILE SEQRES 55 A 847 LEU GLY LYS GLY TYR GLY CYS THR VAL ASP ILE TRP ALA SEQRES 56 A 847 LEU GLY VAL CYS LEU TYR GLU PHE ILE CYS GLY PRO LEU SEQRES 57 A 847 PRO PHE GLY ASN ASP GLN GLU ASP GLN LEU GLU ILE PHE SEQRES 58 A 847 ARG ASP ILE LEU THR GLY GLN LEU THR PHE PRO ASP TYR SEQRES 59 A 847 VAL SER ASP GLN ASP SER ILE ASN LEU MET LYS ARG LEU SEQRES 60 A 847 LEU CYS ARG LEU PRO GLN GLY ARG ILE GLY CYS SER ILE SEQRES 61 A 847 ASN GLY PHE LYS ASP ILE LYS GLU HIS ALA PHE PHE GLY SEQRES 62 A 847 ASN PHE ASN TRP ASP LYS LEU ALA GLY ARG LEU LEU GLU SEQRES 63 A 847 PRO PRO LEU VAL SER LYS GLY GLU THR TYR ALA GLU ASP SEQRES 64 A 847 ILE ASP ILE LYS GLN ILE GLU GLU GLU ASP ALA LEU ASN SEQRES 65 A 847 GLU GLY GLU PRO LEU ASP GLY ASP ASP SER TRP ASP VAL SEQRES 66 A 847 ASP PHE HET 1FB A 901 22 HETNAM 1FB 1-TERT-BUTYL-3-(3-CHLOROPHENOXY)-1H-PYRAZOLO[3,4- HETNAM 2 1FB D]PYRIMIDIN-4-AMINE FORMUL 2 1FB C15 H16 CL N5 O FORMUL 3 HOH *169(H2 O) HELIX 1 AA1 GLU A 21 HIS A 28 1 8 HELIX 2 AA2 LEU A 35 ASN A 48 1 14 HELIX 3 AA3 ASN A 56 MET A 67 1 12 HELIX 4 AA4 GLU A 116 ILE A 120 5 5 HELIX 5 AA5 ARG A 142 VAL A 167 1 26 HELIX 6 AA6 SER A 168 ASP A 171 5 4 HELIX 7 AA7 THR A 174 ASN A 183 1 10 HELIX 8 AA8 GLY A 233 LEU A 238 5 6 HELIX 9 AA9 ARG A 260 LEU A 267 1 8 HELIX 10 AB1 ASN A 269 GLN A 284 1 16 HELIX 11 AB2 SER A 286 GLN A 291 1 6 HELIX 12 AB3 SER A 293 ALA A 304 1 12 HELIX 13 AB4 GLY A 353 ASN A 359 1 7 HELIX 14 AB5 GLU A 381 GLY A 389 1 9 HELIX 15 AB6 ASN A 392 LYS A 407 1 16 HELIX 16 AB7 MET A 409 TYR A 414 1 6 HELIX 17 AB8 SER A 416 ALA A 426 1 11 HELIX 18 AB9 GLY A 475 LEU A 480 5 6 HELIX 19 AC1 LYS A 503 ILE A 510 1 8 HELIX 20 AC2 GLN A 511 THR A 527 1 17 HELIX 21 AC3 GLU A 530 HIS A 532 5 3 HELIX 22 AC4 LYS A 567 LEU A 573 1 7 HELIX 23 AC5 GLN A 576 ASN A 589 1 14 HELIX 24 AC6 GLU A 618 GLY A 627 1 10 HELIX 25 AC7 SER A 630 ARG A 651 1 22 HELIX 26 AC8 LYS A 659 GLU A 661 5 3 HELIX 27 AC9 THR A 692 MET A 696 5 5 HELIX 28 AD1 ALA A 697 LEU A 702 1 6 HELIX 29 AD2 CYS A 708 CYS A 724 1 17 HELIX 30 AD3 ASP A 735 GLY A 746 1 12 HELIX 31 AD4 ASP A 756 LEU A 767 1 12 HELIX 32 AD5 LEU A 770 ARG A 774 5 5 HELIX 33 AD6 PHE A 782 GLU A 787 1 6 HELIX 34 AD7 HIS A 788 GLY A 792 5 5 HELIX 35 AD8 ASN A 795 GLY A 801 1 7 SHEET 1 AA1 5 LEU A 29 GLN A 30 0 SHEET 2 AA1 5 GLN A 68 PHE A 72 -1 O PHE A 69 N GLN A 30 SHEET 3 AA1 5 GLY A 135 GLN A 141 -1 O LEU A 137 N PHE A 70 SHEET 4 AA1 5 TYR A 87 SER A 93 -1 N ILE A 90 O TRP A 138 SHEET 5 AA1 5 SER A 113 PHE A 114 -1 O PHE A 114 N PHE A 89 SHEET 1 AA2 4 LEU A 77 ILE A 79 0 SHEET 2 AA2 4 THR A 128 ALA A 131 -1 O ILE A 129 N VAL A 78 SHEET 3 AA2 4 PHE A 96 TYR A 99 -1 N TYR A 99 O THR A 128 SHEET 4 AA2 4 LYS A 104 MET A 108 -1 O VAL A 105 N VAL A 98 SHEET 1 AA3 2 LYS A 84 GLY A 85 0 SHEET 2 AA3 2 THR A 123 GLN A 124 -1 O THR A 123 N GLY A 85 SHEET 1 AA4 4 VAL A 186 PHE A 190 0 SHEET 2 AA4 4 THR A 253 CYS A 259 -1 O THR A 253 N PHE A 190 SHEET 3 AA4 4 VAL A 205 GLU A 211 -1 N LYS A 210 O ALA A 254 SHEET 4 AA4 4 TYR A 231 PHE A 232 -1 O PHE A 232 N PHE A 207 SHEET 1 AA5 4 THR A 195 VAL A 197 0 SHEET 2 AA5 4 THR A 246 ALA A 249 -1 O ILE A 247 N ILE A 196 SHEET 3 AA5 4 LYS A 213 ILE A 218 -1 N THR A 215 O ILE A 248 SHEET 4 AA5 4 LYS A 221 ASN A 227 -1 O LEU A 226 N ALA A 214 SHEET 1 AA6 4 ILE A 305 TYR A 309 0 SHEET 2 AA6 4 CYS A 374 THR A 380 -1 O CYS A 374 N TYR A 309 SHEET 3 AA6 4 VAL A 324 GLU A 331 -1 N ILE A 328 O ALA A 377 SHEET 4 AA6 4 SER A 351 PHE A 352 -1 O PHE A 352 N LEU A 327 SHEET 1 AA7 4 HIS A 314 HIS A 317 0 SHEET 2 AA7 4 HIS A 366 SER A 370 -1 O VAL A 368 N LEU A 316 SHEET 3 AA7 4 VAL A 334 LEU A 338 -1 N GLU A 335 O LYS A 369 SHEET 4 AA7 4 GLU A 341 LEU A 346 -1 O GLY A 344 N LEU A 336 SHEET 1 AA8 4 ARG A 428 GLU A 433 0 SHEET 2 AA8 4 SER A 495 ASP A 502 -1 O PHE A 500 N ARG A 428 SHEET 3 AA8 4 ARG A 447 ASN A 453 -1 N ILE A 450 O TRP A 499 SHEET 4 AA8 4 TYR A 473 PHE A 474 -1 O PHE A 474 N TYR A 449 SHEET 1 AA9 4 TYR A 437 ILE A 439 0 SHEET 2 AA9 4 SER A 488 SER A 491 -1 O ILE A 489 N ILE A 439 SHEET 3 AA9 4 GLU A 455 LYS A 460 -1 N THR A 459 O SER A 488 SHEET 4 AA9 4 LYS A 463 GLY A 469 -1 O LEU A 465 N VAL A 458 SHEET 1 AB1 5 LEU A 534 ARG A 542 0 SHEET 2 AB1 5 GLY A 546 HIS A 553 -1 O VAL A 548 N ILE A 540 SHEET 3 AB1 5 ARG A 559 SER A 566 -1 O CYS A 564 N THR A 547 SHEET 4 AB1 5 CYS A 606 GLU A 612 -1 O PHE A 607 N VAL A 565 SHEET 5 AB1 5 LEU A 597 PHE A 601 -1 N VAL A 598 O LEU A 610 SHEET 1 AB2 2 ILE A 653 VAL A 654 0 SHEET 2 AB2 2 LYS A 680 LYS A 681 -1 O LYS A 680 N VAL A 654 SHEET 1 AB3 2 ILE A 663 LEU A 665 0 SHEET 2 AB3 2 VAL A 671 LEU A 673 -1 O LYS A 672 N LEU A 664 SITE 1 AC1 10 ILE A 540 ALA A 561 LYS A 563 ILE A 595 SITE 2 AC1 10 PHE A 609 THR A 611 GLU A 612 VAL A 614 SITE 3 AC1 10 GLU A 618 LEU A 664 CRYST1 192.172 117.452 67.699 90.00 94.55 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005204 0.000000 0.000414 0.00000 SCALE2 0.000000 0.008514 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014818 0.00000