HEADER HYDROLASE/HYDROLASE INHIBITOR 02-OCT-14 4WKN TITLE CRYSTAL STRUCTURE OF HELICOBACTER PYLORI 5'-METHYLTHIOADENOSINE/S- TITLE 2 ADENOSYL HOMOCYSTEINE NUCLEOSIDASE (MTAN) COMPLEXED WITH METHYLTHIO- TITLE 3 DADME-IMMUCILLIN-A COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINODEOXYFUTALOSINE NUCLEOSIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AMINOFUTALOSINE NUCLEOSIDASE,5'-METHYLTHIOADENOSINE/S- COMPND 5 ADENOSYLHOMOCYSTEINE NUCLEOSIDASE,MTAN,6-AMINO-6-DEOXYFUTALOSINE N- COMPND 6 RIBOSYLHYDROLASE; COMPND 7 EC: 3.2.2.9; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 85963; SOURCE 4 STRAIN: J99 / ATCC 700824; SOURCE 5 GENE: MTNN, MTN, JHP_0082; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32A KEYWDS HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.A.CAMERON,S.WANG,S.C.ALMO,V.L.SCHRAMM REVDAT 5 27-SEP-23 4WKN 1 REMARK REVDAT 4 25-DEC-19 4WKN 1 REMARK REVDAT 3 20-SEP-17 4WKN 1 REMARK REVDAT 2 02-DEC-15 4WKN 1 JRNL REVDAT 1 25-NOV-15 4WKN 0 JRNL AUTH S.WANG,S.A.CAMERON,K.CLINCH,G.B.EVANS,Z.WU,V.L.SCHRAMM, JRNL AUTH 2 P.C.TYLER JRNL TITL NEW ANTIBIOTIC CANDIDATES AGAINST HELICOBACTER PYLORI. JRNL REF J.AM.CHEM.SOC. V. 137 14275 2015 JRNL REFN ESSN 1520-5126 JRNL PMID 26494017 JRNL DOI 10.1021/JACS.5B06110 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.WANG,A.M.HAAPALAINEN,F.YAN,Q.DU,P.C.TYLER,G.B.EVANS, REMARK 1 AUTH 2 A.RINALDO-MATTHIS,R.L.BROWN,G.E.NORRIS,S.C.ALMO,V.L.SCHRAMM REMARK 1 TITL A PICOMOLAR TRANSITION STATE ANALOGUE INHIBITOR OF MTAN AS A REMARK 1 TITL 2 SPECIFIC ANTIBIOTIC FOR HELICOBACTER PYLORI. REMARK 1 REF BIOCHEMISTRY 6892 2012 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 22891633 REMARK 1 DOI 10.1021/BI3009664 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 21409 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1159 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1538 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.2210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1753 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.032 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1837 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1794 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2484 ; 1.256 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4148 ; 0.747 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 237 ; 5.687 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 75 ;32.521 ;25.733 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 329 ;13.335 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;15.097 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 289 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2072 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 399 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 933 ; 0.709 ; 1.678 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 932 ; 0.699 ; 1.677 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1169 ; 1.112 ; 2.513 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 230 REMARK 3 ORIGIN FOR THE GROUP (A): 6.0896 45.0353 -26.3273 REMARK 3 T TENSOR REMARK 3 T11: 0.0356 T22: 0.0121 REMARK 3 T33: 0.0331 T12: -0.0026 REMARK 3 T13: 0.0023 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 1.4586 L22: 0.9274 REMARK 3 L33: 1.1400 L12: 0.0725 REMARK 3 L13: 0.5440 L23: -0.0162 REMARK 3 S TENSOR REMARK 3 S11: -0.0342 S12: -0.1141 S13: 0.1983 REMARK 3 S21: 0.0912 S22: 0.0162 S23: -0.0197 REMARK 3 S31: -0.1710 S32: 0.0032 S33: 0.0180 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4WKN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000203982. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : DOUBLE SILICON(111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22676 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 39.80 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 38.00 REMARK 200 R MERGE FOR SHELL (I) : 0.81100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.790 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4FFS REMARK 200 REMARK 200 REMARK: CUBES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MG/ML); RESERVOIR (0.1 M REMARK 280 BICINE PH 9.0 AND 2.4 M AMMONIUM SULFATE); CRYOPROTECTION (20% REMARK 280 (V/V) GLYCEROL), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y,X,-Z REMARK 290 14555 -Y,-X,-Z REMARK 290 15555 Y,-X,Z REMARK 290 16555 -Y,X,Z REMARK 290 17555 X,Z,-Y REMARK 290 18555 -X,Z,Y REMARK 290 19555 -X,-Z,-Y REMARK 290 20555 X,-Z,Y REMARK 290 21555 Z,Y,-X REMARK 290 22555 Z,-Y,X REMARK 290 23555 -Z,Y,X REMARK 290 24555 -Z,-Y,-X REMARK 290 25555 X+1/2,Y+1/2,Z+1/2 REMARK 290 26555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 27555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 28555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 29555 Z+1/2,X+1/2,Y+1/2 REMARK 290 30555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 31555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 32555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 33555 Y+1/2,Z+1/2,X+1/2 REMARK 290 34555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 35555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 36555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 37555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 38555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 39555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 40555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 41555 X+1/2,Z+1/2,-Y+1/2 REMARK 290 42555 -X+1/2,Z+1/2,Y+1/2 REMARK 290 43555 -X+1/2,-Z+1/2,-Y+1/2 REMARK 290 44555 X+1/2,-Z+1/2,Y+1/2 REMARK 290 45555 Z+1/2,Y+1/2,-X+1/2 REMARK 290 46555 Z+1/2,-Y+1/2,X+1/2 REMARK 290 47555 -Z+1/2,Y+1/2,X+1/2 REMARK 290 48555 -Z+1/2,-Y+1/2,-X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 78.47900 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 78.47900 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 78.47900 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 78.47900 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 78.47900 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 78.47900 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 78.47900 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 78.47900 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 78.47900 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 78.47900 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 78.47900 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 78.47900 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 78.47900 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 78.47900 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 78.47900 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 78.47900 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 78.47900 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 78.47900 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 78.47900 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 78.47900 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 78.47900 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 78.47900 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 78.47900 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 78.47900 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 78.47900 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 78.47900 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 78.47900 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 78.47900 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 78.47900 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 78.47900 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 78.47900 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 78.47900 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 78.47900 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 78.47900 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 78.47900 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 78.47900 REMARK 290 SMTRY1 37 0.000000 1.000000 0.000000 78.47900 REMARK 290 SMTRY2 37 1.000000 0.000000 0.000000 78.47900 REMARK 290 SMTRY3 37 0.000000 0.000000 -1.000000 78.47900 REMARK 290 SMTRY1 38 0.000000 -1.000000 0.000000 78.47900 REMARK 290 SMTRY2 38 -1.000000 0.000000 0.000000 78.47900 REMARK 290 SMTRY3 38 0.000000 0.000000 -1.000000 78.47900 REMARK 290 SMTRY1 39 0.000000 1.000000 0.000000 78.47900 REMARK 290 SMTRY2 39 -1.000000 0.000000 0.000000 78.47900 REMARK 290 SMTRY3 39 0.000000 0.000000 1.000000 78.47900 REMARK 290 SMTRY1 40 0.000000 -1.000000 0.000000 78.47900 REMARK 290 SMTRY2 40 1.000000 0.000000 0.000000 78.47900 REMARK 290 SMTRY3 40 0.000000 0.000000 1.000000 78.47900 REMARK 290 SMTRY1 41 1.000000 0.000000 0.000000 78.47900 REMARK 290 SMTRY2 41 0.000000 0.000000 1.000000 78.47900 REMARK 290 SMTRY3 41 0.000000 -1.000000 0.000000 78.47900 REMARK 290 SMTRY1 42 -1.000000 0.000000 0.000000 78.47900 REMARK 290 SMTRY2 42 0.000000 0.000000 1.000000 78.47900 REMARK 290 SMTRY3 42 0.000000 1.000000 0.000000 78.47900 REMARK 290 SMTRY1 43 -1.000000 0.000000 0.000000 78.47900 REMARK 290 SMTRY2 43 0.000000 0.000000 -1.000000 78.47900 REMARK 290 SMTRY3 43 0.000000 -1.000000 0.000000 78.47900 REMARK 290 SMTRY1 44 1.000000 0.000000 0.000000 78.47900 REMARK 290 SMTRY2 44 0.000000 0.000000 -1.000000 78.47900 REMARK 290 SMTRY3 44 0.000000 1.000000 0.000000 78.47900 REMARK 290 SMTRY1 45 0.000000 0.000000 1.000000 78.47900 REMARK 290 SMTRY2 45 0.000000 1.000000 0.000000 78.47900 REMARK 290 SMTRY3 45 -1.000000 0.000000 0.000000 78.47900 REMARK 290 SMTRY1 46 0.000000 0.000000 1.000000 78.47900 REMARK 290 SMTRY2 46 0.000000 -1.000000 0.000000 78.47900 REMARK 290 SMTRY3 46 1.000000 0.000000 0.000000 78.47900 REMARK 290 SMTRY1 47 0.000000 0.000000 -1.000000 78.47900 REMARK 290 SMTRY2 47 0.000000 1.000000 0.000000 78.47900 REMARK 290 SMTRY3 47 1.000000 0.000000 0.000000 78.47900 REMARK 290 SMTRY1 48 0.000000 0.000000 -1.000000 78.47900 REMARK 290 SMTRY2 48 0.000000 -1.000000 0.000000 78.47900 REMARK 290 SMTRY3 48 -1.000000 0.000000 0.000000 78.47900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 426 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -14 REMARK 465 GLY A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 1 CG1 CG2 REMARK 470 LYS A 84 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 51 160.67 86.62 REMARK 500 ASN A 89 -20.08 83.56 REMARK 500 SER A 117 -153.36 -138.33 REMARK 500 HIS A 155 51.16 -147.82 REMARK 500 GLU A 175 -30.66 -144.01 REMARK 500 ASP A 201 -165.96 -115.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 496 DISTANCE = 6.12 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TDI A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FFS RELATED DB: PDB REMARK 900 4FFS CONTAINS THE SAME PROTEIN (WITH A DIFFERENT TAG) COMPLEXED REMARK 900 WITH BUTYLTHIO-DADME-IMMUCILLIN-A REMARK 900 RELATED ID: 4WKC RELATED DB: PDB REMARK 900 RELATED ID: 4WKO RELATED DB: PDB REMARK 900 RELATED ID: 4WKP RELATED DB: PDB DBREF 4WKN A 2 230 UNP Q9ZMY2 MQMTN_HELPJ 2 230 SEQADV 4WKN MET A -14 UNP Q9ZMY2 INITIATING METHIONINE SEQADV 4WKN GLY A -13 UNP Q9ZMY2 EXPRESSION TAG SEQADV 4WKN HIS A -12 UNP Q9ZMY2 EXPRESSION TAG SEQADV 4WKN HIS A -11 UNP Q9ZMY2 EXPRESSION TAG SEQADV 4WKN HIS A -10 UNP Q9ZMY2 EXPRESSION TAG SEQADV 4WKN HIS A -9 UNP Q9ZMY2 EXPRESSION TAG SEQADV 4WKN HIS A -8 UNP Q9ZMY2 EXPRESSION TAG SEQADV 4WKN HIS A -7 UNP Q9ZMY2 EXPRESSION TAG SEQADV 4WKN GLU A -6 UNP Q9ZMY2 EXPRESSION TAG SEQADV 4WKN ASN A -5 UNP Q9ZMY2 EXPRESSION TAG SEQADV 4WKN LEU A -4 UNP Q9ZMY2 EXPRESSION TAG SEQADV 4WKN TYR A -3 UNP Q9ZMY2 EXPRESSION TAG SEQADV 4WKN PHE A -2 UNP Q9ZMY2 EXPRESSION TAG SEQADV 4WKN GLN A -1 UNP Q9ZMY2 EXPRESSION TAG SEQADV 4WKN GLY A 0 UNP Q9ZMY2 EXPRESSION TAG SEQADV 4WKN VAL A 1 UNP Q9ZMY2 EXPRESSION TAG SEQRES 1 A 245 MET GLY HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE SEQRES 2 A 245 GLN GLY VAL GLN LYS ILE GLY ILE LEU GLY ALA MET ARG SEQRES 3 A 245 GLU GLU ILE THR PRO ILE LEU GLU LEU PHE GLY VAL ASP SEQRES 4 A 245 PHE GLU GLU ILE PRO LEU GLY GLY ASN VAL PHE HIS LYS SEQRES 5 A 245 GLY VAL TYR HIS ASN LYS GLU ILE ILE VAL ALA TYR SER SEQRES 6 A 245 LYS ILE GLY LYS VAL HIS SER THR LEU THR THR THR SER SEQRES 7 A 245 MET ILE LEU ALA PHE GLY VAL GLN LYS VAL LEU PHE SER SEQRES 8 A 245 GLY VAL ALA GLY SER LEU VAL LYS ASP LEU LYS ILE ASN SEQRES 9 A 245 ASP LEU LEU VAL ALA THR GLN LEU VAL GLN HIS ASP VAL SEQRES 10 A 245 ASP LEU SER ALA PHE ASP HIS PRO LEU GLY PHE ILE PRO SEQRES 11 A 245 GLU SER ALA ILE PHE ILE GLU THR SER GLY SER LEU ASN SEQRES 12 A 245 ALA LEU ALA LYS LYS ILE ALA ASN GLU GLN HIS ILE ALA SEQRES 13 A 245 LEU LYS GLU GLY VAL ILE ALA SER GLY ASP GLN PHE VAL SEQRES 14 A 245 HIS SER LYS GLU ARG LYS GLU PHE LEU VAL SER GLU PHE SEQRES 15 A 245 LYS ALA SER ALA VAL GLU MET GLU GLY ALA SER VAL ALA SEQRES 16 A 245 PHE VAL CYS GLN LYS PHE GLY VAL PRO CYS CYS VAL LEU SEQRES 17 A 245 ARG SER ILE SER ASP ASN ALA ASP GLU LYS ALA GLY MET SEQRES 18 A 245 SER PHE ASP GLU PHE LEU GLU LYS SER ALA HIS THR SER SEQRES 19 A 245 ALA LYS PHE LEU LYS SER MET VAL ASP GLU LEU HET TDI A 301 20 HETNAM TDI (3R,4S)-1-[(4-AMINO-5H-PYRROLO[3,2-D]PYRIMIDIN-7-YL) HETNAM 2 TDI METHYL]-4-[(METHYLSULFANYL)METHYL]PYRROLIDIN-3-OL HETSYN TDI (3R,4S)-1-[9-DEAZAADENIN-9-YL)METHYL]-3-HYDROXY-4- HETSYN 2 TDI (METHYLTHIOMETHYL)PYRROLIDINE FORMUL 2 TDI C13 H19 N5 O S FORMUL 3 HOH *149(H2 O) HELIX 1 AA1 MET A 10 GLY A 22 1 13 HELIX 2 AA2 GLY A 53 GLY A 69 1 17 HELIX 3 AA3 LEU A 104 ASP A 108 5 5 HELIX 4 AA4 SER A 124 GLN A 138 1 15 HELIX 5 AA5 SER A 156 LYS A 168 1 13 HELIX 6 AA6 GLU A 175 PHE A 186 1 12 HELIX 7 AA7 LYS A 203 LEU A 230 1 28 SHEET 1 AA1 9 GLU A 26 LEU A 30 0 SHEET 2 AA1 9 ASN A 33 TYR A 40 -1 O LYS A 37 N GLU A 26 SHEET 3 AA1 9 LYS A 43 TYR A 49 -1 O VAL A 47 N HIS A 36 SHEET 4 AA1 9 GLN A 2 GLY A 8 1 N ILE A 6 O ILE A 46 SHEET 5 AA1 9 LYS A 72 SER A 81 1 O SER A 76 N LEU A 7 SHEET 6 AA1 9 ALA A 169 GLU A 173 -1 O VAL A 172 N GLY A 80 SHEET 7 AA1 9 LEU A 142 SER A 149 1 N VAL A 146 O SER A 170 SHEET 8 AA1 9 LEU A 91 GLN A 99 1 N VAL A 98 O SER A 149 SHEET 9 AA1 9 ILE A 121 GLU A 122 -1 O ILE A 121 N LEU A 97 SHEET 1 AA2 8 GLU A 26 LEU A 30 0 SHEET 2 AA2 8 ASN A 33 TYR A 40 -1 O LYS A 37 N GLU A 26 SHEET 3 AA2 8 LYS A 43 TYR A 49 -1 O VAL A 47 N HIS A 36 SHEET 4 AA2 8 GLN A 2 GLY A 8 1 N ILE A 6 O ILE A 46 SHEET 5 AA2 8 LYS A 72 SER A 81 1 O SER A 76 N LEU A 7 SHEET 6 AA2 8 CYS A 190 ASP A 198 1 O CYS A 191 N PHE A 75 SHEET 7 AA2 8 LEU A 91 GLN A 99 -1 N LEU A 92 O ARG A 194 SHEET 8 AA2 8 ILE A 121 GLU A 122 -1 O ILE A 121 N LEU A 97 SITE 1 AC1 15 ALA A 9 ILE A 52 VAL A 78 ALA A 79 SITE 2 AC1 15 GLY A 80 GLN A 152 PHE A 153 VAL A 154 SITE 3 AC1 15 GLU A 173 MET A 174 GLU A 175 SER A 197 SITE 4 AC1 15 ASP A 198 PHE A 208 HOH A 461 CRYST1 156.958 156.958 156.958 90.00 90.00 90.00 I 4 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006371 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006371 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006371 0.00000