HEADER TRANSFERASE 07-OCT-14 4WLH TITLE HIGH RESOLUTION CRYSTAL STRUCTURE OF HUMAN KYNURENINE TITLE 2 AMINOTRANSFERASE-I BOUND TO PLP COFACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: KYNURENINE--OXOGLUTARATE TRANSAMINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CYSTEINE-S-CONJUGATE BETA-LYASE,GLUTAMINE TRANSAMINASE K, COMPND 5 GTK,GLUTAMINE--PHENYLPYRUVATE TRANSAMINASE,KYNURENINE COMPND 6 AMINOTRANSFERASE 1,KYNURENINE AMINOTRANSFERASE I,KATI,KYNURENINE-- COMPND 7 OXOGLUTARATE TRANSAMINASE I; COMPND 8 EC: 2.6.1.7,4.4.1.13,2.6.1.64; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KYAT1, CCBL1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBLUEBAC4.5 KEYWDS AMINOTRANSFERASE, ALTERNATE CONFORMATIONS, ALPHA BETA PROTEIN, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.A.NADVI,N.K.SALAM,J.PARK,F.N.AKLADIOS,V.KAPOOR,C.A.COLLYER, AUTHOR 2 M.D.GORRELL,W.B.CHURCH REVDAT 7 15-NOV-23 4WLH 1 REMARK REVDAT 6 27-SEP-23 4WLH 1 REMARK REVDAT 5 31-MAY-17 4WLH 1 JRNL REVDAT 4 10-MAY-17 4WLH 1 SEQRES REVDAT 3 03-MAY-17 4WLH 1 HETNAM REVDAT 2 20-JUL-16 4WLH 1 REMARK REVDAT 1 03-DEC-14 4WLH 0 JRNL AUTH N.A.NADVI,N.K.SALAM,J.PARK,F.N.AKLADIOS,V.KAPOOR, JRNL AUTH 2 C.A.COLLYER,M.D.GORRELL,W.B.CHURCH JRNL TITL HIGH RESOLUTION CRYSTAL STRUCTURES OF HUMAN KYNURENINE JRNL TITL 2 AMINOTRANSFERASE-I BOUND TO PLP COFACTOR, AND IN COMPLEX JRNL TITL 3 WITH AMINOOXYACETATE. JRNL REF PROTEIN SCI. V. 26 727 2017 JRNL REFN ESSN 1469-896X JRNL PMID 28097769 JRNL DOI 10.1002/PRO.3119 REMARK 2 REMARK 2 RESOLUTION. 1.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 208771 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 10493 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.9787 - 3.9686 1.00 6709 375 0.1585 0.1637 REMARK 3 2 3.9686 - 3.1534 1.00 6634 376 0.1684 0.1786 REMARK 3 3 3.1534 - 2.7558 1.00 6632 342 0.1796 0.1961 REMARK 3 4 2.7558 - 2.5043 1.00 6672 342 0.1649 0.1695 REMARK 3 5 2.5043 - 2.3250 1.00 6601 346 0.1520 0.1602 REMARK 3 6 2.3250 - 2.1881 1.00 6654 339 0.1488 0.1445 REMARK 3 7 2.1881 - 2.0786 1.00 6639 345 0.1599 0.1763 REMARK 3 8 2.0786 - 1.9882 1.00 6574 378 0.1615 0.1866 REMARK 3 9 1.9882 - 1.9117 1.00 6603 343 0.1670 0.1784 REMARK 3 10 1.9117 - 1.8458 1.00 6631 331 0.1687 0.1911 REMARK 3 11 1.8458 - 1.7881 1.00 6617 363 0.1622 0.1898 REMARK 3 12 1.7881 - 1.7370 1.00 6610 339 0.1566 0.1734 REMARK 3 13 1.7370 - 1.6913 1.00 6550 370 0.1517 0.1932 REMARK 3 14 1.6913 - 1.6501 1.00 6643 312 0.1572 0.1810 REMARK 3 15 1.6501 - 1.6126 1.00 6614 364 0.1581 0.1847 REMARK 3 16 1.6126 - 1.5783 1.00 6587 357 0.1594 0.1750 REMARK 3 17 1.5783 - 1.5467 1.00 6604 337 0.1642 0.1875 REMARK 3 18 1.5467 - 1.5175 1.00 6610 360 0.1695 0.1797 REMARK 3 19 1.5175 - 1.4904 1.00 6591 372 0.1777 0.2080 REMARK 3 20 1.4904 - 1.4652 1.00 6608 333 0.1922 0.2236 REMARK 3 21 1.4652 - 1.4416 1.00 6594 357 0.1918 0.2144 REMARK 3 22 1.4416 - 1.4194 1.00 6558 363 0.2017 0.2175 REMARK 3 23 1.4194 - 1.3985 1.00 6611 337 0.2061 0.2229 REMARK 3 24 1.3985 - 1.3788 1.00 6568 326 0.2122 0.2278 REMARK 3 25 1.3788 - 1.3602 1.00 6636 379 0.2166 0.2455 REMARK 3 26 1.3602 - 1.3425 1.00 6605 336 0.2227 0.2528 REMARK 3 27 1.3425 - 1.3257 1.00 6574 330 0.2343 0.2479 REMARK 3 28 1.3257 - 1.3098 1.00 6587 354 0.2371 0.2532 REMARK 3 29 1.3098 - 1.2945 1.00 6587 340 0.2514 0.2932 REMARK 3 30 1.2945 - 1.2800 1.00 6575 347 0.2593 0.2740 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7301 REMARK 3 ANGLE : 1.347 9973 REMARK 3 CHIRALITY : 0.078 1041 REMARK 3 PLANARITY : 0.008 1321 REMARK 3 DIHEDRAL : 12.947 2730 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE HIGH RESOLUTION AT WHICH THIS REMARK 3 STRUCTURE WAS DETERMINED ALLOWED THE IDENTIFICATION OF RESIDUES REMARK 3 WITH ALTERNATE CONFORMATIONS. FOUR REGIONS IN EACH CHAIN WERE REMARK 3 OBSERVED TO BE HIGHLY DISORDERED WITH GENERALLY POORER ELECTION REMARK 3 (419-422). RESIDUES 147-154 WERE REMOVED FROM THE FINAL MODEL REMARK 3 DUE TO THE ABSENCE OF UNAMBIGUOUS ELECTION DENSITY. FOR RESIDUES REMARK 3 IN THE OTHER DISORDERED REGIONS ELECTRON DENSITY COULD BE REMARK 3 OBSERVED FOR MOST OF THE MAIN CHAIN ATOMS, BUT WAS LESS REMARK 3 UNAMBIGUOUS FOR THE SIDE-CHAINS. THESE RESIDUES ARE IN THE FINAL REMARK 3 MODEL, WITH BOTH THE OCCUPANCY AND TEMPERATURE FACTORS SET TO REMARK 3 ZERO FOR MOST OF THESE RESIDUES, DUE TO THE EXISTENCE OF A LEVEL REMARK 3 OF EVIDENCE FOR THEIR LOCATION. REMARK 4 REMARK 4 4WLH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000203924. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95369 REMARK 200 MONOCHROMATOR : SILICON DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 208782 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.280 REMARK 200 RESOLUTION RANGE LOW (A) : 75.247 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.61600 REMARK 200 R SYM FOR SHELL (I) : 0.61600 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: 3FVX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 29% PEG 4000, 0.2 M SODIUM ACETATE, REMARK 280 0.1 M TRIS, PH 7.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.22000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.78000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.22000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 53.78000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 GLY A 147 REMARK 465 PRO A 148 REMARK 465 ILE A 149 REMARK 465 GLN A 150 REMARK 465 ASN A 151 REMARK 465 GLY A 152 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 LYS B 3 REMARK 465 GLY B 147 REMARK 465 PRO B 148 REMARK 465 ILE B 149 REMARK 465 GLN B 150 REMARK 465 ASN B 151 REMARK 465 GLY B 152 REMARK 465 GLU B 153 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 TYR A 15 REMARK 475 VAL A 19 REMARK 475 GLU A 20 REMARK 475 PHE A 21 REMARK 475 VAL A 22 REMARK 475 LYS A 23 REMARK 475 LEU A 24 REMARK 475 ALA A 25 REMARK 475 SER A 26 REMARK 475 GLU A 27 REMARK 475 HIS A 28 REMARK 475 ASP A 29 REMARK 475 LEU A 91 REMARK 475 GLU A 153 REMARK 475 VAL A 358 REMARK 475 ASP A 359 REMARK 475 VAL A 420 REMARK 475 GLU A 421 REMARK 475 LEU A 422 REMARK 475 TYR B 15 REMARK 475 ASN B 16 REMARK 475 PRO B 17 REMARK 475 TRP B 18 REMARK 475 VAL B 19 REMARK 475 GLU B 20 REMARK 475 PHE B 21 REMARK 475 VAL B 22 REMARK 475 LYS B 23 REMARK 475 SER B 26 REMARK 475 GLU B 27 REMARK 475 LEU B 91 REMARK 475 LEU B 154 REMARK 475 GLY B 356 REMARK 475 ALA B 357 REMARK 475 VAL B 358 REMARK 475 ASP B 359 REMARK 475 LYS B 419 REMARK 475 VAL B 420 REMARK 475 GLU B 421 REMARK 475 LEU B 422 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR B 101 O HOH B 604 1.37 REMARK 500 HZ1 LYS B 419 O HOH B 601 1.54 REMARK 500 NZ LYS B 419 O HOH B 601 1.97 REMARK 500 OE1 GLU B 405 O HOH B 602 2.08 REMARK 500 O HOH B 624 O HOH B 780 2.08 REMARK 500 OH TYR B 101 O HOH B 603 2.13 REMARK 500 OH TYR B 101 O HOH B 604 2.13 REMARK 500 OE1 GLU A 237 O HOH A 601 2.14 REMARK 500 OG SER A 157 OE1 GLN A 335 2.14 REMARK 500 NH1 ARG A 315 O HOH A 602 2.15 REMARK 500 OG SER B 157 OE1 GLN B 335 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O PRO A 388 HZ3 LYS B 419 1554 1.40 REMARK 500 O HOH A 628 O HOH B 864 2656 1.70 REMARK 500 O HOH A 634 O HOH B 864 2656 1.84 REMARK 500 O PRO A 388 NZ LYS B 419 1554 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 64 -169.73 -110.20 REMARK 500 SER A 276 -83.46 -133.31 REMARK 500 PHE A 278 -57.51 70.61 REMARK 500 ARG A 300 -0.55 74.78 REMARK 500 SER A 337 179.11 78.17 REMARK 500 ASP B 39 33.88 -98.94 REMARK 500 THR B 64 -168.70 -109.27 REMARK 500 SER B 276 -78.23 -133.09 REMARK 500 PHE B 278 -56.94 68.42 REMARK 500 SER B 337 179.53 78.28 REMARK 500 ASP B 353 47.75 -105.76 REMARK 500 ASP B 359 18.61 57.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WLJ RELATED DB: PDB DBREF 4WLH A 1 422 UNP Q16773 KAT1_HUMAN 1 422 DBREF 4WLH B 1 422 UNP Q16773 KAT1_HUMAN 1 422 SEQRES 1 A 422 MET ALA LYS GLN LEU GLN ALA ARG ARG LEU ASP GLY ILE SEQRES 2 A 422 ASP TYR ASN PRO TRP VAL GLU PHE VAL LYS LEU ALA SER SEQRES 3 A 422 GLU HIS ASP VAL VAL ASN LEU GLY GLN GLY PHE PRO ASP SEQRES 4 A 422 PHE PRO PRO PRO ASP PHE ALA VAL GLU ALA PHE GLN HIS SEQRES 5 A 422 ALA VAL SER GLY ASP PHE MET LEU ASN GLN TYR THR LYS SEQRES 6 A 422 THR PHE GLY TYR PRO PRO LEU THR LYS ILE LEU ALA SER SEQRES 7 A 422 PHE PHE GLY GLU LEU LEU GLY GLN GLU ILE ASP PRO LEU SEQRES 8 A 422 ARG ASN VAL LEU VAL THR VAL GLY GLY TYR GLY ALA LEU SEQRES 9 A 422 PHE THR ALA PHE GLN ALA LEU VAL ASP GLU GLY ASP GLU SEQRES 10 A 422 VAL ILE ILE ILE GLU PRO PHE PHE ASP CYS TYR GLU PRO SEQRES 11 A 422 MET THR MET MET ALA GLY GLY ARG PRO VAL PHE VAL SER SEQRES 12 A 422 LEU LYS PRO GLY PRO ILE GLN ASN GLY GLU LEU GLY SER SEQRES 13 A 422 SER SER ASN TRP GLN LEU ASP PRO MET GLU LEU ALA GLY SEQRES 14 A 422 LYS PHE THR SER ARG THR LYS ALA LEU VAL LEU ASN THR SEQRES 15 A 422 PRO ASN ASN PRO LEU GLY LYS VAL PHE SER ARG GLU GLU SEQRES 16 A 422 LEU GLU LEU VAL ALA SER LEU CYS GLN GLN HIS ASP VAL SEQRES 17 A 422 VAL CYS ILE THR ASP GLU VAL TYR GLN TRP MET VAL TYR SEQRES 18 A 422 ASP GLY HIS GLN HIS ILE SER ILE ALA SER LEU PRO GLY SEQRES 19 A 422 MET TRP GLU ARG THR LEU THR ILE GLY SER ALA GLY LLP SEQRES 20 A 422 THR PHE SER ALA THR GLY TRP LYS VAL GLY TRP VAL LEU SEQRES 21 A 422 GLY PRO ASP HIS ILE MET LYS HIS LEU ARG THR VAL HIS SEQRES 22 A 422 GLN ASN SER VAL PHE HIS CYS PRO THR GLN SER GLN ALA SEQRES 23 A 422 ALA VAL ALA GLU SER PHE GLU ARG GLU GLN LEU LEU PHE SEQRES 24 A 422 ARG GLN PRO SER SER TYR PHE VAL GLN PHE PRO GLN ALA SEQRES 25 A 422 MET GLN ARG CYS ARG ASP HIS MET ILE ARG SER LEU GLN SEQRES 26 A 422 SER VAL GLY LEU LYS PRO ILE ILE PRO GLN GLY SER TYR SEQRES 27 A 422 PHE LEU ILE THR ASP ILE SER ASP PHE LYS ARG LYS MET SEQRES 28 A 422 PRO ASP LEU PRO GLY ALA VAL ASP GLU PRO TYR ASP ARG SEQRES 29 A 422 ARG PHE VAL LYS TRP MET ILE LYS ASN LYS GLY LEU VAL SEQRES 30 A 422 ALA ILE PRO VAL SER ILE PHE TYR SER VAL PRO HIS GLN SEQRES 31 A 422 LYS HIS PHE ASP HIS TYR ILE ARG PHE CYS PHE VAL LYS SEQRES 32 A 422 ASP GLU ALA THR LEU GLN ALA MET ASP GLU LYS LEU ARG SEQRES 33 A 422 LYS TRP LYS VAL GLU LEU SEQRES 1 B 422 MET ALA LYS GLN LEU GLN ALA ARG ARG LEU ASP GLY ILE SEQRES 2 B 422 ASP TYR ASN PRO TRP VAL GLU PHE VAL LYS LEU ALA SER SEQRES 3 B 422 GLU HIS ASP VAL VAL ASN LEU GLY GLN GLY PHE PRO ASP SEQRES 4 B 422 PHE PRO PRO PRO ASP PHE ALA VAL GLU ALA PHE GLN HIS SEQRES 5 B 422 ALA VAL SER GLY ASP PHE MET LEU ASN GLN TYR THR LYS SEQRES 6 B 422 THR PHE GLY TYR PRO PRO LEU THR LYS ILE LEU ALA SER SEQRES 7 B 422 PHE PHE GLY GLU LEU LEU GLY GLN GLU ILE ASP PRO LEU SEQRES 8 B 422 ARG ASN VAL LEU VAL THR VAL GLY GLY TYR GLY ALA LEU SEQRES 9 B 422 PHE THR ALA PHE GLN ALA LEU VAL ASP GLU GLY ASP GLU SEQRES 10 B 422 VAL ILE ILE ILE GLU PRO PHE PHE ASP CYS TYR GLU PRO SEQRES 11 B 422 MET THR MET MET ALA GLY GLY ARG PRO VAL PHE VAL SER SEQRES 12 B 422 LEU LYS PRO GLY PRO ILE GLN ASN GLY GLU LEU GLY SER SEQRES 13 B 422 SER SER ASN TRP GLN LEU ASP PRO MET GLU LEU ALA GLY SEQRES 14 B 422 LYS PHE THR SER ARG THR LYS ALA LEU VAL LEU ASN THR SEQRES 15 B 422 PRO ASN ASN PRO LEU GLY LYS VAL PHE SER ARG GLU GLU SEQRES 16 B 422 LEU GLU LEU VAL ALA SER LEU CYS GLN GLN HIS ASP VAL SEQRES 17 B 422 VAL CYS ILE THR ASP GLU VAL TYR GLN TRP MET VAL TYR SEQRES 18 B 422 ASP GLY HIS GLN HIS ILE SER ILE ALA SER LEU PRO GLY SEQRES 19 B 422 MET TRP GLU ARG THR LEU THR ILE GLY SER ALA GLY LLP SEQRES 20 B 422 THR PHE SER ALA THR GLY TRP LYS VAL GLY TRP VAL LEU SEQRES 21 B 422 GLY PRO ASP HIS ILE MET LYS HIS LEU ARG THR VAL HIS SEQRES 22 B 422 GLN ASN SER VAL PHE HIS CYS PRO THR GLN SER GLN ALA SEQRES 23 B 422 ALA VAL ALA GLU SER PHE GLU ARG GLU GLN LEU LEU PHE SEQRES 24 B 422 ARG GLN PRO SER SER TYR PHE VAL GLN PHE PRO GLN ALA SEQRES 25 B 422 MET GLN ARG CYS ARG ASP HIS MET ILE ARG SER LEU GLN SEQRES 26 B 422 SER VAL GLY LEU LYS PRO ILE ILE PRO GLN GLY SER TYR SEQRES 27 B 422 PHE LEU ILE THR ASP ILE SER ASP PHE LYS ARG LYS MET SEQRES 28 B 422 PRO ASP LEU PRO GLY ALA VAL ASP GLU PRO TYR ASP ARG SEQRES 29 B 422 ARG PHE VAL LYS TRP MET ILE LYS ASN LYS GLY LEU VAL SEQRES 30 B 422 ALA ILE PRO VAL SER ILE PHE TYR SER VAL PRO HIS GLN SEQRES 31 B 422 LYS HIS PHE ASP HIS TYR ILE ARG PHE CYS PHE VAL LYS SEQRES 32 B 422 ASP GLU ALA THR LEU GLN ALA MET ASP GLU LYS LEU ARG SEQRES 33 B 422 LYS TRP LYS VAL GLU LEU MODRES 4WLH LLP A 247 LYS MODIFIED RESIDUE MODRES 4WLH LLP B 247 LYS MODIFIED RESIDUE HET LLP A 247 41 HET LLP B 247 40 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 3 HOH *628(H2 O) HELIX 1 AA1 ALA A 7 ASP A 11 5 5 HELIX 2 AA2 PRO A 17 GLU A 27 1 11 HELIX 3 AA3 PRO A 43 GLY A 56 1 14 HELIX 4 AA4 ASP A 57 GLN A 62 5 6 HELIX 5 AA5 TYR A 69 GLY A 85 1 17 HELIX 6 AA6 VAL A 98 VAL A 112 1 15 HELIX 7 AA7 CYS A 127 ALA A 135 1 9 HELIX 8 AA8 SER A 156 TRP A 160 5 5 HELIX 9 AA9 ASP A 163 PHE A 171 1 9 HELIX 10 AB1 SER A 192 ASP A 207 1 16 HELIX 11 AB2 SER A 228 LEU A 232 5 5 HELIX 12 AB3 MET A 235 GLU A 237 5 3 HELIX 13 AB4 ALA A 245 SER A 250 1 6 HELIX 14 AB5 ALA A 251 LYS A 255 5 5 HELIX 15 AB6 PRO A 262 ASN A 275 1 14 HELIX 16 AB7 PRO A 281 LEU A 298 1 18 HELIX 17 AB8 SER A 304 SER A 326 1 23 HELIX 18 AB9 ILE A 344 MET A 351 1 8 HELIX 19 AC1 PRO A 361 GLY A 375 1 15 HELIX 20 AC2 SER A 382 TYR A 385 5 4 HELIX 21 AC3 SER A 386 LYS A 391 1 6 HELIX 22 AC4 ASP A 404 GLU A 421 1 18 HELIX 23 AC5 ALA B 7 ASP B 11 5 5 HELIX 24 AC6 TRP B 18 HIS B 28 1 11 HELIX 25 AC7 PRO B 43 SER B 55 1 13 HELIX 26 AC8 ASP B 57 GLN B 62 5 6 HELIX 27 AC9 TYR B 69 GLY B 85 1 17 HELIX 28 AD1 ASP B 89 ASN B 93 1 5 HELIX 29 AD2 VAL B 98 VAL B 112 1 15 HELIX 30 AD3 CYS B 127 ALA B 135 1 9 HELIX 31 AD4 SER B 156 TRP B 160 5 5 HELIX 32 AD5 ASP B 163 PHE B 171 1 9 HELIX 33 AD6 SER B 192 ASP B 207 1 16 HELIX 34 AD7 SER B 228 LEU B 232 5 5 HELIX 35 AD8 MET B 235 GLU B 237 5 3 HELIX 36 AD9 ALA B 245 SER B 250 1 6 HELIX 37 AE1 ALA B 251 LYS B 255 5 5 HELIX 38 AE2 PRO B 262 ASN B 275 1 14 HELIX 39 AE3 PRO B 281 LEU B 298 1 18 HELIX 40 AE4 SER B 304 SER B 326 1 23 HELIX 41 AE5 ILE B 344 MET B 351 1 8 HELIX 42 AE6 PRO B 361 GLY B 375 1 15 HELIX 43 AE7 SER B 382 TYR B 385 5 4 HELIX 44 AE8 SER B 386 LYS B 391 1 6 HELIX 45 AE9 ASP B 404 GLU B 421 1 18 SHEET 1 AA1 2 VAL A 31 ASN A 32 0 SHEET 2 AA1 2 LEU A 376 VAL A 377 1 O VAL A 377 N VAL A 31 SHEET 1 AA2 7 VAL A 94 THR A 97 0 SHEET 2 AA2 7 GLY A 257 LEU A 260 -1 O GLY A 257 N THR A 97 SHEET 3 AA2 7 THR A 239 SER A 244 -1 N THR A 241 O LEU A 260 SHEET 4 AA2 7 VAL A 209 ASP A 213 1 N THR A 212 O LEU A 240 SHEET 5 AA2 7 THR A 175 ASN A 181 1 N LEU A 180 O ASP A 213 SHEET 6 AA2 7 GLU A 117 GLU A 122 1 N ILE A 119 O VAL A 179 SHEET 7 AA2 7 ARG A 138 SER A 143 1 O VAL A 142 N GLU A 122 SHEET 1 AA3 4 LYS A 330 ILE A 332 0 SHEET 2 AA3 4 PHE A 339 ASP A 343 -1 O ASP A 343 N LYS A 330 SHEET 3 AA3 4 TYR A 396 CYS A 400 -1 O PHE A 399 N LEU A 340 SHEET 4 AA3 4 ILE A 379 PRO A 380 -1 N ILE A 379 O ARG A 398 SHEET 1 AA4 2 VAL B 31 ASN B 32 0 SHEET 2 AA4 2 LEU B 376 VAL B 377 1 O VAL B 377 N VAL B 31 SHEET 1 AA5 7 VAL B 94 THR B 97 0 SHEET 2 AA5 7 GLY B 257 LEU B 260 -1 O GLY B 257 N THR B 97 SHEET 3 AA5 7 THR B 239 SER B 244 -1 N THR B 241 O LEU B 260 SHEET 4 AA5 7 VAL B 209 ASP B 213 1 N THR B 212 O LEU B 240 SHEET 5 AA5 7 THR B 175 ASN B 181 1 N LEU B 180 O ASP B 213 SHEET 6 AA5 7 GLU B 117 GLU B 122 1 N GLU B 117 O LYS B 176 SHEET 7 AA5 7 ARG B 138 SER B 143 1 O VAL B 142 N GLU B 122 SHEET 1 AA6 4 LYS B 330 ILE B 332 0 SHEET 2 AA6 4 PHE B 339 ASP B 343 -1 O ASP B 343 N LYS B 330 SHEET 3 AA6 4 TYR B 396 CYS B 400 -1 O PHE B 399 N LEU B 340 SHEET 4 AA6 4 ILE B 379 PRO B 380 -1 N ILE B 379 O ARG B 398 LINK C GLY A 246 N LLP A 247 1555 1555 1.34 LINK C LLP A 247 N THR A 248 1555 1555 1.33 LINK C GLY B 246 N LLP B 247 1555 1555 1.32 LINK C LLP B 247 N THR B 248 1555 1555 1.33 CISPEP 1 GLU A 122 PRO A 123 0 0.32 CISPEP 2 THR A 182 PRO A 183 0 -8.40 CISPEP 3 ASN A 185 PRO A 186 0 19.02 CISPEP 4 GLU B 122 PRO B 123 0 0.79 CISPEP 5 THR B 182 PRO B 183 0 -8.39 CISPEP 6 ASN B 185 PRO B 186 0 18.55 CRYST1 102.440 107.560 81.530 90.00 112.64 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009762 0.000000 0.004071 0.00000 SCALE2 0.000000 0.009297 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013289 0.00000