HEADER LYASE 07-OCT-14 4WLI TITLE STATIONARY PHASE SURVIVAL PROTEIN YUIC FROM B.SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: YUIC; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: YUIC, BSU32070; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA-2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS LYTIC TRANSGLYCOSYLASE, PEPTIDOGLYCAN REMODELLING, STATIONARY PHASE, KEYWDS 2 MLTA, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR D.H.X.QUAY,A.R.COLE,A.CRYAR,K.THALASSINOS,M.A.WILLIAMS,S.BHAKTA, AUTHOR 2 N.H.KEEP REVDAT 3 10-JAN-24 4WLI 1 REMARK REVDAT 2 21-SEP-16 4WLI 1 JRNL REVDAT 1 08-JUL-15 4WLI 0 JRNL AUTH D.H.QUAY,A.R.COLE,A.CRYAR,K.THALASSINOS,M.A.WILLIAMS, JRNL AUTH 2 S.BHAKTA,N.H.KEEP JRNL TITL STRUCTURE OF THE STATIONARY PHASE SURVIVAL PROTEIN YUIC FROM JRNL TITL 2 B.SUBTILIS. JRNL REF BMC STRUCT.BIOL. V. 15 12 2015 JRNL REFN ESSN 1472-6807 JRNL PMID 26163297 JRNL DOI 10.1186/S12900-015-0039-Z REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 18131 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.8027 - 3.3656 0.99 2583 130 0.1546 0.1973 REMARK 3 2 3.3656 - 2.6719 1.00 2469 152 0.1686 0.1899 REMARK 3 3 2.6719 - 2.3343 1.00 2469 126 0.1557 0.2144 REMARK 3 4 2.3343 - 2.1209 0.99 2424 139 0.1490 0.1741 REMARK 3 5 2.1209 - 1.9689 1.00 2442 120 0.1623 0.2202 REMARK 3 6 1.9689 - 1.8529 1.00 2414 134 0.1894 0.2351 REMARK 3 7 1.8529 - 1.7601 1.00 2403 126 0.2008 0.2475 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 1161 REMARK 3 ANGLE : 1.495 1574 REMARK 3 CHIRALITY : 0.068 172 REMARK 3 PLANARITY : 0.009 202 REMARK 3 DIHEDRAL : 12.586 434 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6462 26.2766 2.6285 REMARK 3 T TENSOR REMARK 3 T11: 0.1611 T22: 0.1758 REMARK 3 T33: 0.1968 T12: -0.0070 REMARK 3 T13: 0.0158 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 2.9040 L22: 0.7235 REMARK 3 L33: 1.3238 L12: -0.0470 REMARK 3 L13: -0.1356 L23: -0.7122 REMARK 3 S TENSOR REMARK 3 S11: 0.0586 S12: 0.1107 S13: 0.4690 REMARK 3 S21: 0.1215 S22: -0.0516 S23: 0.0239 REMARK 3 S31: -0.0877 S32: 0.0601 S33: 0.0317 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5249 6.2948 5.6423 REMARK 3 T TENSOR REMARK 3 T11: 0.2494 T22: 0.1514 REMARK 3 T33: 0.1526 T12: -0.0031 REMARK 3 T13: 0.0217 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.5929 L22: 2.7514 REMARK 3 L33: 0.8141 L12: 0.2642 REMARK 3 L13: 0.5839 L23: 0.9902 REMARK 3 S TENSOR REMARK 3 S11: 0.0722 S12: -0.1174 S13: -0.1235 REMARK 3 S21: 0.1995 S22: -0.0405 S23: 0.0177 REMARK 3 S31: 0.3382 S32: 0.0683 S33: -0.0750 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0367 19.3228 -1.2621 REMARK 3 T TENSOR REMARK 3 T11: 0.1348 T22: 0.1380 REMARK 3 T33: 0.1265 T12: -0.0109 REMARK 3 T13: -0.0001 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.0900 L22: 1.2013 REMARK 3 L33: 1.0438 L12: -0.5620 REMARK 3 L13: 0.0603 L23: -0.3561 REMARK 3 S TENSOR REMARK 3 S11: 0.0190 S12: 0.0899 S13: -0.0044 REMARK 3 S21: -0.1804 S22: 0.0079 S23: 0.1054 REMARK 3 S31: 0.0784 S32: -0.0915 S33: 0.0089 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9118 18.7285 12.4314 REMARK 3 T TENSOR REMARK 3 T11: 0.1501 T22: 0.2134 REMARK 3 T33: 0.1502 T12: -0.0123 REMARK 3 T13: 0.0012 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.1047 L22: 2.2206 REMARK 3 L33: 3.0127 L12: -0.0846 REMARK 3 L13: -1.7880 L23: 0.6505 REMARK 3 S TENSOR REMARK 3 S11: 0.0722 S12: -0.2064 S13: 0.0874 REMARK 3 S21: 0.0225 S22: -0.0190 S23: -0.0376 REMARK 3 S31: 0.0910 S32: 0.1887 S33: -0.0483 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8494 28.7512 28.7186 REMARK 3 T TENSOR REMARK 3 T11: 0.1419 T22: 0.1512 REMARK 3 T33: 0.1747 T12: -0.0198 REMARK 3 T13: 0.0123 T23: -0.0435 REMARK 3 L TENSOR REMARK 3 L11: 0.5494 L22: 1.9407 REMARK 3 L33: 2.7156 L12: 1.0319 REMARK 3 L13: -0.2078 L23: -0.3179 REMARK 3 S TENSOR REMARK 3 S11: -0.1432 S12: -0.0682 S13: 0.3006 REMARK 3 S21: -0.0303 S22: 0.1978 S23: -0.1496 REMARK 3 S31: -0.0013 S32: 0.2605 S33: -0.0522 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2113 14.9162 38.5794 REMARK 3 T TENSOR REMARK 3 T11: 0.2500 T22: 0.2335 REMARK 3 T33: 0.1757 T12: 0.0032 REMARK 3 T13: 0.0639 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 1.3024 L22: 2.5420 REMARK 3 L33: 1.9063 L12: 0.3017 REMARK 3 L13: -0.1986 L23: 1.2213 REMARK 3 S TENSOR REMARK 3 S11: -0.0944 S12: -0.4111 S13: -0.0878 REMARK 3 S21: 0.4174 S22: 0.1827 S23: 0.3966 REMARK 3 S31: 0.2472 S32: -0.0010 S33: 0.0034 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 194 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.2812 11.6669 29.0655 REMARK 3 T TENSOR REMARK 3 T11: 0.1582 T22: 0.1876 REMARK 3 T33: 0.2547 T12: -0.0249 REMARK 3 T13: 0.0505 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 1.4835 L22: 6.7847 REMARK 3 L33: 0.9840 L12: -1.3141 REMARK 3 L13: 0.6182 L23: -2.5675 REMARK 3 S TENSOR REMARK 3 S11: -0.0096 S12: -0.1153 S13: -0.2191 REMARK 3 S21: 0.0644 S22: -0.0239 S23: 0.7690 REMARK 3 S31: 0.2310 S32: -0.2688 S33: 0.0449 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2909 21.1266 20.0430 REMARK 3 T TENSOR REMARK 3 T11: 0.2377 T22: 0.3182 REMARK 3 T33: 0.2429 T12: 0.0163 REMARK 3 T13: -0.0568 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 2.7923 L22: 3.4940 REMARK 3 L33: 3.9040 L12: -0.7686 REMARK 3 L13: -0.5108 L23: 0.4185 REMARK 3 S TENSOR REMARK 3 S11: -0.0272 S12: 0.6448 S13: 0.1155 REMARK 3 S21: -0.4840 S22: -0.2517 S23: 0.0879 REMARK 3 S31: -0.0998 S32: -0.0451 S33: 0.1972 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WLI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000203950. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18150 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 30.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.74500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4WJT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM CHLORIDE, 25 (V/V) REMARK 280 GLYCEROL ETHOXYLATE, 0.1M HEPES PH7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.50000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 30.50000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.00500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.63500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 25.00500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.63500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.50000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 25.00500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.63500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 30.50000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 25.00500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.63500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 30.50000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 438 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 476 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 97 REMARK 465 GLU A 98 REMARK 465 SER A 99 REMARK 465 THR A 100 REMARK 465 THR A 215 REMARK 465 VAL A 216 REMARK 465 LYS A 217 REMARK 465 GLU A 218 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 433 O HOH A 467 1.82 REMARK 500 O HOH A 496 O HOH A 526 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 467 O HOH A 467 3555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 144 -57.01 -121.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WJT RELATED DB: PDB REMARK 900 4WJT HAS SAME PROTEIN WITH NAG BOUND IN THE ACTIVE SITE DBREF 4WLI A 73 218 UNP O32108 YUIC_BACSU 73 218 SEQRES 1 A 146 PRO LEU GLU GLU ALA PHE ASP TRP ASP GLU TYR PRO VAL SEQRES 2 A 146 GLN ARG VAL THR ALA THR GLY TYR THR ALA GLY ALA GLU SEQRES 3 A 146 SER THR GLY LYS ASN PRO GLY ASP PRO LEU TYR GLY LEU SEQRES 4 A 146 THR TYR SER GLY VAL LYS VAL LYS ARG ASP LEU TYR SER SEQRES 5 A 146 THR VAL ALA ALA ASP PRO SER VAL PHE PRO ILE GLY THR SEQRES 6 A 146 ILE LEU PHE ILE PRO ASN TYR GLY LEU GLY VAL VAL ALA SEQRES 7 A 146 ASP THR GLY SER ALA ILE LYS GLY ASN ARG LEU ASP LEU SEQRES 8 A 146 TYR PHE GLU THR VAL LYS ASP VAL TYR ASN GLU TRP GLY SEQRES 9 A 146 LYS LYS THR LEU ASP VAL TYR VAL ILE LYS LYS GLY THR SEQRES 10 A 146 GLY LYS ILE THR GLU ASP GLU LEU GLU LYS LEU ASN GLU SEQRES 11 A 146 THR LYS SER LEU GLN VAL PHE ARG ASN GLN TYR LYS THR SEQRES 12 A 146 VAL LYS GLU HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 4(C2 H6 O2) FORMUL 6 HOH *128(H2 O) HELIX 1 AA1 PRO A 73 PHE A 78 1 6 HELIX 2 AA2 ASP A 79 TYR A 83 5 5 HELIX 3 AA3 THR A 167 GLY A 176 1 10 HELIX 4 AA4 THR A 193 GLU A 202 1 10 HELIX 5 AA5 THR A 203 SER A 205 5 3 HELIX 6 AA6 LEU A 206 LYS A 214 1 9 SHEET 1 AA1 5 THR A 89 TYR A 93 0 SHEET 2 AA1 5 ARG A 160 TYR A 164 1 O LEU A 163 N THR A 91 SHEET 3 AA1 5 TYR A 123 ALA A 128 -1 N ALA A 127 O ASP A 162 SHEET 4 AA1 5 GLY A 145 ASP A 151 1 O VAL A 148 N SER A 124 SHEET 5 AA1 5 ILE A 138 ILE A 141 -1 N LEU A 139 O GLY A 147 SITE 1 AC1 7 TYR A 93 ALA A 127 ASP A 151 THR A 152 SITE 2 AC1 7 GLY A 153 ASP A 162 EDO A 304 SITE 1 AC2 5 ARG A 87 LYS A 177 THR A 179 ASP A 181 SITE 2 AC2 5 HOH A 424 SITE 1 AC3 5 GLN A 86 ARG A 87 ASN A 159 SER A 205 SITE 2 AC3 5 VAL A 208 SITE 1 AC4 7 ALA A 95 GLY A 96 LEU A 111 ASP A 151 SITE 2 AC4 7 EDO A 301 HOH A 485 HOH A 500 CRYST1 50.010 117.270 61.000 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019996 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008527 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016393 0.00000