HEADER HYDROLASE 08-OCT-14 4WMF TITLE CRYSTAL STRUCTURE OF CATALYTICALLY INACTIVE MERS-COV 3CL PROTEASE TITLE 2 (C148A) IN SPACEGROUP P212121 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MERS-COV 3CL PROTEASE; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MIDDLE EAST RESPIRATORY SYNDROME CORONAVIRUS; SOURCE 3 ORGANISM_TAXID: 1335626; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PDN2551 KEYWDS MES, 3CL PROTEASE, CORONAVIRUS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.T.LOUNTOS,D.NEEDLE,D.S.WAUGH REVDAT 5 27-SEP-23 4WMF 1 REMARK REVDAT 4 12-FEB-20 4WMF 1 SOURCE REMARK SITE ATOM REVDAT 3 27-MAY-15 4WMF 1 KEYWDS REVDAT 2 20-MAY-15 4WMF 1 JRNL REVDAT 1 13-MAY-15 4WMF 0 JRNL AUTH D.NEEDLE,G.T.LOUNTOS,D.S.WAUGH JRNL TITL STRUCTURES OF THE MIDDLE EAST RESPIRATORY SYNDROME JRNL TITL 2 CORONAVIRUS 3C-LIKE PROTEASE REVEAL INSIGHTS INTO SUBSTRATE JRNL TITL 3 SPECIFICITY. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 1102 2015 JRNL REFN ESSN 1399-0047 JRNL PMID 25945576 JRNL DOI 10.1107/S1399004715003521 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0104 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 102185 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5370 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7185 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.3440 REMARK 3 BIN FREE R VALUE SET COUNT : 393 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6800 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 758 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71000 REMARK 3 B22 (A**2) : 0.58000 REMARK 3 B33 (A**2) : 0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.133 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.995 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7465 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4788 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10180 ; 1.539 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11787 ; 0.922 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 977 ; 6.510 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 297 ;37.460 ;24.916 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1160 ;13.335 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;20.633 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1146 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8494 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1484 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4709 ; 1.001 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1924 ; 0.242 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7660 ; 1.794 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2756 ; 2.610 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2520 ; 4.103 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4WMF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000204042. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 107729 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04700 REMARK 200 FOR THE DATA SET : 40.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.77500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2YNA, CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.3 MG/ML PROTEIN, WELL SOLUTION: REMARK 280 0,1M HEPES PH 7.5, 0.2M PROLINE, 10% W/V POLYETHYLENE GLYCOL REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.02950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.44200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.19550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.44200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.02950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 60.19550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 11 REMARK 465 GLN A 306 REMARK 465 VAL B 304 REMARK 465 MET B 305 REMARK 465 GLN B 306 REMARK 465 SER C 1 REMARK 465 GLY C 2 REMARK 465 LEU C 3 REMARK 465 VAL C 4 REMARK 465 LYS C 5 REMARK 465 MET C 6 REMARK 465 SER C 7 REMARK 465 HIS C 8 REMARK 465 PRO C 9 REMARK 465 SER C 10 REMARK 465 GLN C 48 REMARK 465 LEU C 49 REMARK 465 SER C 50 REMARK 465 ASN C 172 REMARK 465 HIS C 194 REMARK 465 GLN C 195 REMARK 465 VAL C 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 305 CG SD CE REMARK 470 LYS C 191 CG CD CE NZ REMARK 470 GLN C 192 CG CD OE1 NE2 REMARK 470 VAL C 193 CG1 CG2 REMARK 470 GLN C 197 CG CD OE1 NE2 REMARK 470 LEU C 198 CG CD1 CD2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 VAL B 94 N CA C O CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 250 O HOH A 501 2.13 REMARK 500 OE1 GLN A 167 OG SER A 178 2.14 REMARK 500 O ASP B 55 O HOH B 501 2.17 REMARK 500 OG SER C 250 O HOH C 501 2.17 REMARK 500 OG1 THR A 107 O HOH A 502 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 159 CB VAL A 159 CG2 0.132 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -126.71 53.84 REMARK 500 ASP A 51 58.28 -150.19 REMARK 500 ALA A 187 25.10 48.40 REMARK 500 GLN A 195 -39.38 -135.54 REMARK 500 VAL A 196 127.62 40.02 REMARK 500 GLN A 277 60.60 37.59 REMARK 500 LEU B 27 -169.46 -160.82 REMARK 500 LEU B 27 -169.46 -171.94 REMARK 500 ASP B 33 -121.92 55.15 REMARK 500 ASP B 51 82.16 -157.45 REMARK 500 ASP C 33 -125.15 53.87 REMARK 500 ALA C 46 42.58 83.38 REMARK 500 ALA C 76 141.10 -172.81 REMARK 500 GLN C 167 -73.06 -115.08 REMARK 500 LEU C 170 -129.02 -97.33 REMARK 500 LEU C 198 -70.71 -66.75 REMARK 500 THR C 199 93.23 70.48 REMARK 500 ASN C 240 30.08 -142.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 806 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A 807 DISTANCE = 8.05 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 C 402 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 C 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WMD RELATED DB: PDB REMARK 900 RELATED ID: 4WME RELATED DB: PDB DBREF 4WMF A 1 306 UNP W6A941 W6A941_9BETC 3248 3553 DBREF 4WMF B 1 306 UNP W6A941 W6A941_9BETC 3248 3553 DBREF 4WMF C 1 306 UNP W6A941 W6A941_9BETC 3248 3553 SEQADV 4WMF ALA A 148 UNP W6A941 CYS 3395 ENGINEERED MUTATION SEQADV 4WMF ALA B 148 UNP W6A941 CYS 3395 ENGINEERED MUTATION SEQADV 4WMF ALA C 148 UNP W6A941 CYS 3395 ENGINEERED MUTATION SEQRES 1 A 306 SER GLY LEU VAL LYS MET SER HIS PRO SER GLY ASP VAL SEQRES 2 A 306 GLU ALA CYS MET VAL GLN VAL THR CYS GLY SER MET THR SEQRES 3 A 306 LEU ASN GLY LEU TRP LEU ASP ASN THR VAL TRP CYS PRO SEQRES 4 A 306 ARG HIS VAL MET CYS PRO ALA ASP GLN LEU SER ASP PRO SEQRES 5 A 306 ASN TYR ASP ALA LEU LEU ILE SER MET THR ASN HIS SER SEQRES 6 A 306 PHE SER VAL GLN LYS HIS ILE GLY ALA PRO ALA ASN LEU SEQRES 7 A 306 ARG VAL VAL GLY HIS ALA MET GLN GLY THR LEU LEU LYS SEQRES 8 A 306 LEU THR VAL ASP VAL ALA ASN PRO SER THR PRO ALA TYR SEQRES 9 A 306 THR PHE THR THR VAL LYS PRO GLY ALA ALA PHE SER VAL SEQRES 10 A 306 LEU ALA CYS TYR ASN GLY ARG PRO THR GLY THR PHE THR SEQRES 11 A 306 VAL VAL MET ARG PRO ASN TYR THR ILE LYS GLY SER PHE SEQRES 12 A 306 LEU CYS GLY SER ALA GLY SER VAL GLY TYR THR LYS GLU SEQRES 13 A 306 GLY SER VAL ILE ASN PHE CYS TYR MET HIS GLN MET GLU SEQRES 14 A 306 LEU ALA ASN GLY THR HIS THR GLY SER ALA PHE ASP GLY SEQRES 15 A 306 THR MET TYR GLY ALA PHE MET ASP LYS GLN VAL HIS GLN SEQRES 16 A 306 VAL GLN LEU THR ASP LYS TYR CYS SER VAL ASN VAL VAL SEQRES 17 A 306 ALA TRP LEU TYR ALA ALA ILE LEU ASN GLY CYS ALA TRP SEQRES 18 A 306 PHE VAL LYS PRO ASN ARG THR SER VAL VAL SER PHE ASN SEQRES 19 A 306 GLU TRP ALA LEU ALA ASN GLN PHE THR GLU PHE VAL GLY SEQRES 20 A 306 THR GLN SER VAL ASP MET LEU ALA VAL LYS THR GLY VAL SEQRES 21 A 306 ALA ILE GLU GLN LEU LEU TYR ALA ILE GLN GLN LEU TYR SEQRES 22 A 306 THR GLY PHE GLN GLY LYS GLN ILE LEU GLY SER THR MET SEQRES 23 A 306 LEU GLU ASP GLU PHE THR PRO GLU ASP VAL ASN MET GLN SEQRES 24 A 306 ILE MET GLY VAL VAL MET GLN SEQRES 1 B 306 SER GLY LEU VAL LYS MET SER HIS PRO SER GLY ASP VAL SEQRES 2 B 306 GLU ALA CYS MET VAL GLN VAL THR CYS GLY SER MET THR SEQRES 3 B 306 LEU ASN GLY LEU TRP LEU ASP ASN THR VAL TRP CYS PRO SEQRES 4 B 306 ARG HIS VAL MET CYS PRO ALA ASP GLN LEU SER ASP PRO SEQRES 5 B 306 ASN TYR ASP ALA LEU LEU ILE SER MET THR ASN HIS SER SEQRES 6 B 306 PHE SER VAL GLN LYS HIS ILE GLY ALA PRO ALA ASN LEU SEQRES 7 B 306 ARG VAL VAL GLY HIS ALA MET GLN GLY THR LEU LEU LYS SEQRES 8 B 306 LEU THR VAL ASP VAL ALA ASN PRO SER THR PRO ALA TYR SEQRES 9 B 306 THR PHE THR THR VAL LYS PRO GLY ALA ALA PHE SER VAL SEQRES 10 B 306 LEU ALA CYS TYR ASN GLY ARG PRO THR GLY THR PHE THR SEQRES 11 B 306 VAL VAL MET ARG PRO ASN TYR THR ILE LYS GLY SER PHE SEQRES 12 B 306 LEU CYS GLY SER ALA GLY SER VAL GLY TYR THR LYS GLU SEQRES 13 B 306 GLY SER VAL ILE ASN PHE CYS TYR MET HIS GLN MET GLU SEQRES 14 B 306 LEU ALA ASN GLY THR HIS THR GLY SER ALA PHE ASP GLY SEQRES 15 B 306 THR MET TYR GLY ALA PHE MET ASP LYS GLN VAL HIS GLN SEQRES 16 B 306 VAL GLN LEU THR ASP LYS TYR CYS SER VAL ASN VAL VAL SEQRES 17 B 306 ALA TRP LEU TYR ALA ALA ILE LEU ASN GLY CYS ALA TRP SEQRES 18 B 306 PHE VAL LYS PRO ASN ARG THR SER VAL VAL SER PHE ASN SEQRES 19 B 306 GLU TRP ALA LEU ALA ASN GLN PHE THR GLU PHE VAL GLY SEQRES 20 B 306 THR GLN SER VAL ASP MET LEU ALA VAL LYS THR GLY VAL SEQRES 21 B 306 ALA ILE GLU GLN LEU LEU TYR ALA ILE GLN GLN LEU TYR SEQRES 22 B 306 THR GLY PHE GLN GLY LYS GLN ILE LEU GLY SER THR MET SEQRES 23 B 306 LEU GLU ASP GLU PHE THR PRO GLU ASP VAL ASN MET GLN SEQRES 24 B 306 ILE MET GLY VAL VAL MET GLN SEQRES 1 C 306 SER GLY LEU VAL LYS MET SER HIS PRO SER GLY ASP VAL SEQRES 2 C 306 GLU ALA CYS MET VAL GLN VAL THR CYS GLY SER MET THR SEQRES 3 C 306 LEU ASN GLY LEU TRP LEU ASP ASN THR VAL TRP CYS PRO SEQRES 4 C 306 ARG HIS VAL MET CYS PRO ALA ASP GLN LEU SER ASP PRO SEQRES 5 C 306 ASN TYR ASP ALA LEU LEU ILE SER MET THR ASN HIS SER SEQRES 6 C 306 PHE SER VAL GLN LYS HIS ILE GLY ALA PRO ALA ASN LEU SEQRES 7 C 306 ARG VAL VAL GLY HIS ALA MET GLN GLY THR LEU LEU LYS SEQRES 8 C 306 LEU THR VAL ASP VAL ALA ASN PRO SER THR PRO ALA TYR SEQRES 9 C 306 THR PHE THR THR VAL LYS PRO GLY ALA ALA PHE SER VAL SEQRES 10 C 306 LEU ALA CYS TYR ASN GLY ARG PRO THR GLY THR PHE THR SEQRES 11 C 306 VAL VAL MET ARG PRO ASN TYR THR ILE LYS GLY SER PHE SEQRES 12 C 306 LEU CYS GLY SER ALA GLY SER VAL GLY TYR THR LYS GLU SEQRES 13 C 306 GLY SER VAL ILE ASN PHE CYS TYR MET HIS GLN MET GLU SEQRES 14 C 306 LEU ALA ASN GLY THR HIS THR GLY SER ALA PHE ASP GLY SEQRES 15 C 306 THR MET TYR GLY ALA PHE MET ASP LYS GLN VAL HIS GLN SEQRES 16 C 306 VAL GLN LEU THR ASP LYS TYR CYS SER VAL ASN VAL VAL SEQRES 17 C 306 ALA TRP LEU TYR ALA ALA ILE LEU ASN GLY CYS ALA TRP SEQRES 18 C 306 PHE VAL LYS PRO ASN ARG THR SER VAL VAL SER PHE ASN SEQRES 19 C 306 GLU TRP ALA LEU ALA ASN GLN PHE THR GLU PHE VAL GLY SEQRES 20 C 306 THR GLN SER VAL ASP MET LEU ALA VAL LYS THR GLY VAL SEQRES 21 C 306 ALA ILE GLU GLN LEU LEU TYR ALA ILE GLN GLN LEU TYR SEQRES 22 C 306 THR GLY PHE GLN GLY LYS GLN ILE LEU GLY SER THR MET SEQRES 23 C 306 LEU GLU ASP GLU PHE THR PRO GLU ASP VAL ASN MET GLN SEQRES 24 C 306 ILE MET GLY VAL VAL MET GLN HET PEG A 401 7 HET PEG A 402 7 HET PEG A 403 7 HET PG4 B 401 13 HET PG4 B 402 13 HET PEG B 403 7 HET PEG B 404 7 HET PG4 B 405 13 HET PG4 B 406 13 HET PEG C 401 7 HET PG4 C 402 12 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 4 PEG 6(C4 H10 O3) FORMUL 7 PG4 5(C8 H18 O5) FORMUL 15 HOH *758(H2 O) HELIX 1 AA1 VAL A 13 ALA A 15 5 3 HELIX 2 AA2 HIS A 41 CYS A 44 5 4 HELIX 3 AA3 PRO A 45 LEU A 49 5 5 HELIX 4 AA4 ASN A 53 MET A 61 1 9 HELIX 5 AA5 THR A 62 HIS A 64 5 3 HELIX 6 AA6 MET A 184 PHE A 188 5 5 HELIX 7 AA7 CYS A 203 ASN A 217 1 15 HELIX 8 AA8 SER A 229 ASN A 240 1 12 HELIX 9 AA9 THR A 248 GLY A 259 1 12 HELIX 10 AB1 ALA A 261 GLY A 275 1 15 HELIX 11 AB2 THR A 292 GLY A 302 1 11 HELIX 12 AB3 SER B 10 ALA B 15 1 6 HELIX 13 AB4 HIS B 41 CYS B 44 5 4 HELIX 14 AB5 PRO B 45 LEU B 49 5 5 HELIX 15 AB6 ASN B 53 SER B 60 1 8 HELIX 16 AB7 THR B 62 HIS B 64 5 3 HELIX 17 AB8 MET B 184 PHE B 188 5 5 HELIX 18 AB9 CYS B 203 ASN B 217 1 15 HELIX 19 AC1 SER B 229 ALA B 239 1 11 HELIX 20 AC2 THR B 248 GLY B 259 1 12 HELIX 21 AC3 ALA B 261 GLY B 275 1 15 HELIX 22 AC4 THR B 292 MET B 301 1 10 HELIX 23 AC5 VAL C 13 ALA C 15 5 3 HELIX 24 AC6 HIS C 41 CYS C 44 5 4 HELIX 25 AC7 ASN C 53 SER C 60 1 8 HELIX 26 AC8 THR C 62 HIS C 64 5 3 HELIX 27 AC9 MET C 184 PHE C 188 5 5 HELIX 28 AD1 CYS C 203 GLY C 218 1 16 HELIX 29 AD2 SER C 229 ALA C 239 1 11 HELIX 30 AD3 THR C 248 GLY C 259 1 12 HELIX 31 AD4 ALA C 261 TYR C 273 1 13 HELIX 32 AD5 THR C 292 GLY C 302 1 11 SHEET 1 AA1 7 ALA A 76 LEU A 78 0 SHEET 2 AA1 7 PHE A 66 LYS A 70 -1 N LYS A 70 O ALA A 76 SHEET 3 AA1 7 MET A 17 CYS A 22 -1 N GLN A 19 O GLN A 69 SHEET 4 AA1 7 MET A 25 LEU A 32 -1 O LEU A 27 N VAL A 20 SHEET 5 AA1 7 THR A 35 PRO A 39 -1 O TRP A 37 N LEU A 30 SHEET 6 AA1 7 LEU A 89 VAL A 94 -1 O LEU A 90 N CYS A 38 SHEET 7 AA1 7 VAL A 80 GLN A 86 -1 N ALA A 84 O LYS A 91 SHEET 1 AA2 3 TYR A 104 PHE A 106 0 SHEET 2 AA2 3 VAL A 159 ALA A 171 1 O PHE A 162 N THR A 105 SHEET 3 AA2 3 THR A 174 SER A 178 -1 O THR A 174 N LEU A 170 SHEET 1 AA3 5 ARG A 124 VAL A 132 0 SHEET 2 AA3 5 ALA A 114 TYR A 121 -1 N ALA A 119 O THR A 126 SHEET 3 AA3 5 VAL A 151 GLU A 156 -1 O TYR A 153 N SER A 116 SHEET 4 AA3 5 VAL A 159 ALA A 171 -1 O TYR A 164 N GLY A 152 SHEET 5 AA3 5 VAL C 304 MET C 305 -1 O VAL C 304 N GLU A 169 SHEET 1 AA4 7 ALA B 76 LEU B 78 0 SHEET 2 AA4 7 PHE B 66 LYS B 70 -1 N LYS B 70 O ALA B 76 SHEET 3 AA4 7 MET B 17 CYS B 22 -1 N GLN B 19 O GLN B 69 SHEET 4 AA4 7 MET B 25 LEU B 32 -1 O GLY B 29 N VAL B 18 SHEET 5 AA4 7 THR B 35 PRO B 39 -1 O TRP B 37 N LEU B 30 SHEET 6 AA4 7 LEU B 89 VAL B 94 -1 O LEU B 92 N VAL B 36 SHEET 7 AA4 7 VAL B 80 GLN B 86 -1 N GLN B 86 O LEU B 89 SHEET 1 AA5 5 TYR B 104 PHE B 106 0 SHEET 2 AA5 5 VAL B 159 ALA B 171 1 O PHE B 162 N THR B 105 SHEET 3 AA5 5 VAL B 151 GLU B 156 -1 N GLY B 152 O TYR B 164 SHEET 4 AA5 5 ALA B 114 TYR B 121 -1 N LEU B 118 O VAL B 151 SHEET 5 AA5 5 ARG B 124 VAL B 132 -1 O PHE B 129 N VAL B 117 SHEET 1 AA6 3 TYR B 104 PHE B 106 0 SHEET 2 AA6 3 VAL B 159 ALA B 171 1 O PHE B 162 N THR B 105 SHEET 3 AA6 3 THR B 174 SER B 178 -1 O THR B 174 N LEU B 170 SHEET 1 AA7 7 ALA C 76 LEU C 78 0 SHEET 2 AA7 7 PHE C 66 LYS C 70 -1 N LYS C 70 O ALA C 76 SHEET 3 AA7 7 MET C 17 CYS C 22 -1 N GLN C 19 O GLN C 69 SHEET 4 AA7 7 MET C 25 LEU C 32 -1 O LEU C 27 N VAL C 20 SHEET 5 AA7 7 THR C 35 PRO C 39 -1 O THR C 35 N LEU C 32 SHEET 6 AA7 7 LEU C 89 VAL C 94 -1 O LEU C 90 N CYS C 38 SHEET 7 AA7 7 VAL C 80 GLN C 86 -1 N VAL C 81 O THR C 93 SHEET 1 AA8 5 TYR C 104 PHE C 106 0 SHEET 2 AA8 5 VAL C 159 GLU C 169 1 O PHE C 162 N THR C 105 SHEET 3 AA8 5 VAL C 151 GLU C 156 -1 N THR C 154 O ASN C 161 SHEET 4 AA8 5 ALA C 114 TYR C 121 -1 N SER C 116 O TYR C 153 SHEET 5 AA8 5 ARG C 124 VAL C 132 -1 O THR C 126 N ALA C 119 SHEET 1 AA9 4 TYR C 104 PHE C 106 0 SHEET 2 AA9 4 VAL C 159 GLU C 169 1 O PHE C 162 N THR C 105 SHEET 3 AA9 4 THR C 174 SER C 178 -1 O SER C 178 N MET C 165 SHEET 4 AA9 4 ILE C 139 LYS C 140 -1 N ILE C 139 O HIS C 175 SITE 1 AC1 3 ASP A 200 GLN A 241 HOH A 700 SITE 1 AC2 3 THR A 105 PHE A 106 HOH A 747 SITE 1 AC3 7 LYS A 91 VAL A 256 LYS A 257 GLY A 259 SITE 2 AC3 7 HOH A 556 HOH A 617 HOH A 694 SITE 1 AC4 12 HIS B 41 PHE B 143 CYS B 145 HIS B 166 SITE 2 AC4 12 MET B 168 GLU B 169 LYS B 191 PG4 B 405 SITE 3 AC4 12 HOH B 579 HOH B 581 HOH B 585 HOH B 639 SITE 1 AC5 10 MET A 6 SER A 7 HIS A 8 MET A 298 SITE 2 AC5 10 HOH A 539 HOH A 594 HOH A 597 TYR B 121 SITE 3 AC5 10 THR B 126 HOH B 506 SITE 1 AC6 4 ARG B 134 ASP B 200 TYR B 202 HOH B 595 SITE 1 AC7 5 TYR B 104 THR B 105 PHE B 106 HOH B 705 SITE 2 AC7 5 GLY C 259 SITE 1 AC8 4 GLU B 169 LEU B 170 GLN B 192 PG4 B 401 SITE 1 AC9 12 TYR A 121 THR A 126 HOH A 522 HOH A 548 SITE 2 AC9 12 MET B 6 SER B 7 HIS B 8 MET B 298 SITE 3 AC9 12 HOH B 520 HOH B 521 HOH B 550 HOH B 592 SITE 1 AD1 2 THR B 258 PHE C 106 SITE 1 AD2 8 VAL B 256 LYS B 257 HOH B 609 THR C 35 SITE 2 AD2 8 TRP C 37 GLN C 86 LYS C 91 HOH C 556 CRYST1 94.059 120.391 138.884 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010632 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008306 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007200 0.00000