HEADER IMMUNE SYSTEM 15-OCT-14 4WO4 TITLE THE MOLECULAR BASES OF DELTA/ALPHA BETA T CELL-MEDIATED ANTIGEN TITLE 2 RECOGNITION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIGEN-PRESENTING GLYCOPROTEIN CD1D; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: R3G1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: TCR VARIABLE DELTA 1 CHAIN AND TCR CONSTANT ALPHA; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: TCR VARIABLE BETA 2 (TRVB20) CHAIN AND TCR CONSTANT BETA; COMPND 16 CHAIN: D; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD1D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 20 MOL_ID: 4; SOURCE 21 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IMMUNITY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.G.PELLICCI,A.P.ULDRICH,J.LE NOURS,F.ROSS,E.CHABROL,S.B.G.ECKLE,R.DE AUTHOR 2 BOER,R.T.LIM,K.MCPHERSON,G.BESRA,A.R.HOWELL,L.MORETTA,J.MCCLUSKEY, AUTHOR 3 M.H.M.HEEMSKERK,S.GRAS,J.ROSSJOHN,D.I.GODFREY REVDAT 7 27-DEC-23 4WO4 1 HETSYN LINK REVDAT 6 29-JUL-20 4WO4 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 08-JAN-20 4WO4 1 REMARK REVDAT 4 13-SEP-17 4WO4 1 COMPND SOURCE JRNL REMARK REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 24-DEC-14 4WO4 1 JRNL REVDAT 2 17-DEC-14 4WO4 1 JRNL REVDAT 1 26-NOV-14 4WO4 0 JRNL AUTH D.G.PELLICCI,A.P.ULDRICH,J.LE NOURS,F.ROSS,E.CHABROL, JRNL AUTH 2 S.B.ECKLE,R.DE BOER,R.T.LIM,K.MCPHERSON,G.BESRA,A.R.HOWELL, JRNL AUTH 3 L.MORETTA,J.MCCLUSKEY,M.H.HEEMSKERK,S.GRAS,J.ROSSJOHN, JRNL AUTH 4 D.I.GODFREY JRNL TITL THE MOLECULAR BASES OF DELTA / ALPHA BETA T CELL-MEDIATED JRNL TITL 2 ANTIGEN RECOGNITION. JRNL REF J.EXP.MED. V. 211 2599 2014 JRNL REFN ESSN 1540-9538 JRNL PMID 25452463 JRNL DOI 10.1084/JEM.20141764 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 41804 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2113 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.56 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3058 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2410 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2876 REMARK 3 BIN R VALUE (WORKING SET) : 0.2379 REMARK 3 BIN FREE R VALUE : 0.2892 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.95 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 182 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6408 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 173 REMARK 3 SOLVENT ATOMS : 205 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.23640 REMARK 3 B22 (A**2) : 2.65340 REMARK 3 B33 (A**2) : 5.58300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.309 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.340 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.238 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.337 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.240 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6875 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9358 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 3161 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 167 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 979 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6875 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 903 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7223 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.14 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.25 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.21 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WO4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000204152. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.1 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41804 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 36.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG1500 0.1M SODIUM MALONATE REMARK 280 -IMIDAZOLE-BORATE (2:3:3 MOLAR RATIO) 3% PEG3350, PH 8.1, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.46500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.58000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.62500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 94.58000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.46500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.62500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 6 REMARK 465 MET B 0 REMARK 465 MET B 99 REMARK 465 HIS C -1 REMARK 465 MET C 0 REMARK 465 ALA C 1 REMARK 465 PRO C 215 REMARK 465 GLU C 216 REMARK 465 SER C 217 REMARK 465 SER C 218 REMARK 465 HIS D -1 REMARK 465 MET D 0 REMARK 465 ASP D 253 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 7 CG CD1 CD2 REMARK 470 GLN A 61 CG CD OE1 NE2 REMARK 470 ASP A 80 CG OD1 OD2 REMARK 470 GLN A 135 CG CD OE1 NE2 REMARK 470 GLU A 136 CG CD OE1 OE2 REMARK 470 GLU A 255 CG CD OE1 OE2 REMARK 470 ILE B 1 CG1 CG2 CD1 REMARK 470 GLU B 44 CG CD OE1 OE2 REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 GLU B 74 CG CD OE1 OE2 REMARK 470 LYS B 75 CG CD CE NZ REMARK 470 GLN B 89 CG CD OE1 NE2 REMARK 470 GLN C 160 CG CD OE1 NE2 REMARK 470 LYS C 162 CG CD CE NZ REMARK 470 ASP C 194 CG OD1 OD2 REMARK 470 GLU D 72 CG CD OE1 OE2 REMARK 470 GLU D 124 CG CD OE1 OE2 REMARK 470 ASP D 194 CG OD1 OD2 REMARK 470 GLU D 228 CG CD OE1 OE2 REMARK 470 ASN D 229 CG OD1 ND2 REMARK 470 GLU D 231 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 279 O ASP C 143 2154 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 108 -132.15 -126.53 REMARK 500 ALA A 109 -106.84 -95.81 REMARK 500 SER A 110 135.62 -173.79 REMARK 500 PRO A 199 -81.26 -82.06 REMARK 500 ASN B 17 136.75 -39.39 REMARK 500 LYS B 48 58.52 -94.35 REMARK 500 TRP B 60 0.21 80.13 REMARK 500 LYS B 75 6.52 81.46 REMARK 500 ARG C 16 -14.18 68.62 REMARK 500 LYS C 48 9.06 89.31 REMARK 500 LEU C 53 -61.13 -107.33 REMARK 500 SER D 100 -169.96 -161.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WNQ RELATED DB: PDB REMARK 900 4WNQ CONTAINS THE TCR IN A NON COMPLEX FORM. DBREF 4WO4 A 6 277 UNP P15813 CD1D_HUMAN 24 295 DBREF 4WO4 B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 4WO4 C -1 218 PDB 4WO4 4WO4 -1 218 DBREF 4WO4 D -1 253 PDB 4WO4 4WO4 -1 253 SEQADV 4WO4 PRO A 278 UNP P15813 EXPRESSION TAG SEQADV 4WO4 ARG A 279 UNP P15813 EXPRESSION TAG SEQADV 4WO4 MET B 0 UNP P61769 INITIATING METHIONINE SEQRES 1 A 274 ARG LEU PHE PRO LEU ARG CYS LEU GLN ILE SER SER PHE SEQRES 2 A 274 ALA ASN SER SER TRP THR ARG THR ASP GLY LEU ALA TRP SEQRES 3 A 274 LEU GLY GLU LEU GLN THR HIS SER TRP SER ASN ASP SER SEQRES 4 A 274 ASP THR VAL ARG SER LEU LYS PRO TRP SER GLN GLY THR SEQRES 5 A 274 PHE SER ASP GLN GLN TRP GLU THR LEU GLN HIS ILE PHE SEQRES 6 A 274 ARG VAL TYR ARG SER SER PHE THR ARG ASP VAL LYS GLU SEQRES 7 A 274 PHE ALA LYS MET LEU ARG LEU SER TYR PRO LEU GLU LEU SEQRES 8 A 274 GLN VAL SER ALA GLY CYS GLU VAL HIS PRO GLY ASN ALA SEQRES 9 A 274 SER ASN ASN PHE PHE HIS VAL ALA PHE GLN GLY LYS ASP SEQRES 10 A 274 ILE LEU SER PHE GLN GLY THR SER TRP GLU PRO THR GLN SEQRES 11 A 274 GLU ALA PRO LEU TRP VAL ASN LEU ALA ILE GLN VAL LEU SEQRES 12 A 274 ASN GLN ASP LYS TRP THR ARG GLU THR VAL GLN TRP LEU SEQRES 13 A 274 LEU ASN GLY THR CYS PRO GLN PHE VAL SER GLY LEU LEU SEQRES 14 A 274 GLU SER GLY LYS SER GLU LEU LYS LYS GLN VAL LYS PRO SEQRES 15 A 274 LYS ALA TRP LEU SER ARG GLY PRO SER PRO GLY PRO GLY SEQRES 16 A 274 ARG LEU LEU LEU VAL CYS HIS VAL SER GLY PHE TYR PRO SEQRES 17 A 274 LYS PRO VAL TRP VAL LYS TRP MET ARG GLY GLU GLN GLU SEQRES 18 A 274 GLN GLN GLY THR GLN PRO GLY ASP ILE LEU PRO ASN ALA SEQRES 19 A 274 ASP GLU THR TRP TYR LEU ARG ALA THR LEU ASP VAL VAL SEQRES 20 A 274 ALA GLY GLU ALA ALA GLY LEU SER CYS ARG VAL LYS HIS SEQRES 21 A 274 SER SER LEU GLU GLY GLN ASP ILE VAL LEU TYR TRP PRO SEQRES 22 A 274 ARG SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 207 HIS MET ALA GLN LYS VAL THR GLN ALA GLN SER SER VAL SEQRES 2 C 207 SER MET PRO VAL ARG LYS ALA VAL THR LEU ASN CYS LEU SEQRES 3 C 207 TYR GLU THR SER TRP TRP SER TYR TYR ILE PHE TRP TYR SEQRES 4 C 207 LYS GLN LEU PRO SER LYS GLU MET ILE PHE LEU ILE ARG SEQRES 5 C 207 GLN GLY SER ASP GLU GLN ASN ALA LYS SER GLY ARG TYR SEQRES 6 C 207 SER VAL ASN PHE LYS LYS ALA ALA LYS SER VAL ALA LEU SEQRES 7 C 207 THR ILE SER ALA LEU GLN LEU GLU ASP SER ALA LYS TYR SEQRES 8 C 207 PHE CYS ALA LEU GLY VAL THR GLY LYS LEU THR PHE GLY SEQRES 9 C 207 GLN GLY THR ILE LEU THR VAL HIS PRO ASN ILE GLN ASN SEQRES 10 C 207 PRO ASP PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SER SEQRES 11 C 207 SER ASP LYS SER VAL CYS LEU PHE THR ASP PHE ASP SER SEQRES 12 C 207 GLN THR ASN VAL SER GLN SER LYS ASP SER ASP VAL TYR SEQRES 13 C 207 ILE THR ASP LYS CYS VAL LEU ASP MET ARG SER MET ASP SEQRES 14 C 207 PHE LYS SER ASN SER ALA VAL ALA TRP SER ASN LYS SER SEQRES 15 C 207 ASP PHE ALA CYS ALA ASN ALA PHE ASN ASN SER ILE ILE SEQRES 16 C 207 PRO GLU ASP THR PHE PHE PRO SER PRO GLU SER SER SEQRES 1 D 245 HIS MET GLY ALA VAL VAL SER GLN HIS PRO SER ARG VAL SEQRES 2 D 245 ILE SER LYS SER GLY THR SER VAL LYS ILE GLU CYS ARG SEQRES 3 D 245 SER LEU ASP PHE GLN ALA THR THR MET PHE TRP TYR ARG SEQRES 4 D 245 GLN PHE PRO LYS GLN SER LEU MET LEU MET ALA THR SER SEQRES 5 D 245 ASN GLU GLY SER LYS ALA THR TYR GLU GLN GLY VAL GLU SEQRES 6 D 245 LYS ASP LYS PHE LEU ILE ASN HIS ALA SER LEU THR LEU SEQRES 7 D 245 SER THR LEU THR VAL THR SER ALA HIS PRO GLU ASP SER SEQRES 8 D 245 SER PHE TYR ILE CYS SER ALA PRO GLY GLY VAL GLY ALA SEQRES 9 D 245 PHE PHE GLY GLN GLY THR ARG LEU THR VAL VAL GLU ASP SEQRES 10 D 245 LEU LYS ASN VAL PHE PRO PRO GLU VAL ALA VAL PHE GLU SEQRES 11 D 245 PRO SER GLU ALA GLU ILE SER HIS THR GLN LYS ALA THR SEQRES 12 D 245 LEU VAL CYS LEU ALA THR GLY PHE TYR PRO ASP HIS VAL SEQRES 13 D 245 GLU LEU SER TRP TRP VAL ASN GLY LYS GLU VAL HIS SER SEQRES 14 D 245 GLY VAL CYS THR ASP PRO GLN PRO LEU LYS GLU GLN PRO SEQRES 15 D 245 ALA LEU ASN ASP SER ARG TYR ALA LEU SER SER ARG LEU SEQRES 16 D 245 ARG VAL SER ALA THR PHE TRP GLN ASN PRO ARG ASN HIS SEQRES 17 D 245 PHE ARG CYS GLN VAL GLN PHE TYR GLY LEU SER GLU ASN SEQRES 18 D 245 ASP GLU TRP THR GLN ASP ARG ALA LYS PRO VAL THR GLN SEQRES 19 D 245 ILE VAL SER ALA GLU ALA TRP GLY ARG ALA ASP HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET FUC E 4 10 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET NAG G 2 14 HET FUC G 3 10 HET JLS A 310 58 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM JLS (15Z)-N-[(2S,3S,4R)-1-(ALPHA-D-GALACTOPYRANOSYLOXY)-3, HETNAM 2 JLS 4-DIHYDROXYOCTADECAN-2-YL]TETRACOS-15-ENAMIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN JLS PBS-44 FORMUL 5 NAG 6(C8 H15 N O6) FORMUL 5 BMA C6 H12 O6 FORMUL 5 FUC 2(C6 H12 O5) FORMUL 8 JLS C48 H93 N O9 FORMUL 9 HOH *205(H2 O) HELIX 1 AA1 SER A 59 ARG A 89 1 31 HELIX 2 AA2 PRO A 138 ASP A 151 1 14 HELIX 3 AA3 ASP A 151 GLY A 164 1 14 HELIX 4 AA4 GLY A 164 GLY A 177 1 14 HELIX 5 AA5 GLY A 177 LYS A 182 1 6 HELIX 6 AA6 GLY A 254 ALA A 257 5 4 HELIX 7 AA7 GLN C 95 SER C 99 5 5 HELIX 8 AA8 ARG C 177 ASP C 180 5 4 HELIX 9 AA9 ALA C 196 PHE C 201 1 6 HELIX 10 AB1 ILE C 206 THR C 210 5 5 HELIX 11 AB2 HIS D 95 SER D 99 5 5 HELIX 12 AB3 ASP D 125 VAL D 129 5 5 HELIX 13 AB4 SER D 140 GLN D 148 1 9 HELIX 14 AB5 ALA D 207 GLN D 211 1 5 SHEET 1 AA1 8 ARG A 48 SER A 49 0 SHEET 2 AA1 8 LEU A 35 TRP A 40 -1 N SER A 39 O ARG A 48 SHEET 3 AA1 8 TRP A 23 LEU A 32 -1 N LEU A 32 O LEU A 35 SHEET 4 AA1 8 LEU A 10 ASN A 20 -1 N LEU A 13 O LEU A 29 SHEET 5 AA1 8 LEU A 94 VAL A 104 -1 O ALA A 100 N CYS A 12 SHEET 6 AA1 8 SER A 110 PHE A 118 -1 O HIS A 115 N SER A 99 SHEET 7 AA1 8 LYS A 121 GLN A 127 -1 O LYS A 121 N PHE A 118 SHEET 8 AA1 8 SER A 130 PRO A 133 -1 O GLU A 132 N SER A 125 SHEET 1 AA2 4 LYS A 188 GLY A 194 0 SHEET 2 AA2 4 ARG A 201 PHE A 211 -1 O HIS A 207 N TRP A 190 SHEET 3 AA2 4 TRP A 243 VAL A 252 -1 O LEU A 249 N LEU A 204 SHEET 4 AA2 4 GLN A 231 PRO A 232 -1 N GLN A 231 O THR A 248 SHEET 1 AA3 4 LYS A 188 GLY A 194 0 SHEET 2 AA3 4 ARG A 201 PHE A 211 -1 O HIS A 207 N TRP A 190 SHEET 3 AA3 4 TRP A 243 VAL A 252 -1 O LEU A 249 N LEU A 204 SHEET 4 AA3 4 LEU A 236 PRO A 237 -1 N LEU A 236 O TYR A 244 SHEET 1 AA4 4 GLN A 225 GLU A 226 0 SHEET 2 AA4 4 TRP A 217 ARG A 222 -1 N ARG A 222 O GLN A 225 SHEET 3 AA4 4 SER A 260 LYS A 264 -1 O SER A 260 N MET A 221 SHEET 4 AA4 4 ILE A 273 TYR A 276 -1 O LEU A 275 N CYS A 261 SHEET 1 AA5 4 LYS B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O PHE B 70 N ASN B 21 SHEET 4 AA5 4 VAL B 49 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 AA6 4 LYS B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O PHE B 70 N ASN B 21 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 GLU B 44 ARG B 45 0 SHEET 2 AA7 4 ILE B 35 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA7 4 TYR B 78 HIS B 84 -1 O ALA B 79 N LEU B 40 SHEET 4 AA7 4 LYS B 91 LYS B 94 -1 O VAL B 93 N CYS B 80 SHEET 1 AA8 2 LYS C 3 THR C 5 0 SHEET 2 AA8 2 LEU C 24 GLU C 26 -1 O LEU C 24 N THR C 5 SHEET 1 AA9 5 SER C 10 PRO C 14 0 SHEET 2 AA9 5 THR C 118 HIS C 123 1 O THR C 121 N VAL C 11 SHEET 3 AA9 5 ALA C 100 VAL C 108 -1 N TYR C 102 O THR C 118 SHEET 4 AA9 5 TYR C 33 GLN C 44 -1 N PHE C 40 O ALA C 105 SHEET 5 AA9 5 MET C 50 GLY C 57 -1 O GLN C 56 N ILE C 39 SHEET 1 AB1 4 SER C 10 PRO C 14 0 SHEET 2 AB1 4 THR C 118 HIS C 123 1 O THR C 121 N VAL C 11 SHEET 3 AB1 4 ALA C 100 VAL C 108 -1 N TYR C 102 O THR C 118 SHEET 4 AB1 4 LYS C 111 PHE C 114 -1 O THR C 113 N LEU C 106 SHEET 1 AB2 4 VAL C 19 LEU C 21 0 SHEET 2 AB2 4 SER C 86 ILE C 91 -1 O LEU C 89 N LEU C 21 SHEET 3 AB2 4 TYR C 76 LYS C 81 -1 N SER C 77 O THR C 90 SHEET 4 AB2 4 LYS C 71 SER C 72 -1 N SER C 72 O TYR C 76 SHEET 1 AB3 4 ALA C 132 GLN C 135 0 SHEET 2 AB3 4 SER C 145 THR C 150 -1 O LEU C 148 N TYR C 134 SHEET 3 AB3 4 PHE C 181 SER C 190 -1 O ALA C 186 N PHE C 149 SHEET 4 AB3 4 VAL C 166 ILE C 168 -1 N TYR C 167 O TRP C 189 SHEET 1 AB4 4 ALA C 132 GLN C 135 0 SHEET 2 AB4 4 SER C 145 THR C 150 -1 O LEU C 148 N TYR C 134 SHEET 3 AB4 4 PHE C 181 SER C 190 -1 O ALA C 186 N PHE C 149 SHEET 4 AB4 4 CYS C 172 MET C 176 -1 N MET C 176 O PHE C 181 SHEET 1 AB5 4 VAL D 4 HIS D 7 0 SHEET 2 AB5 4 VAL D 19 SER D 25 -1 O ARG D 24 N SER D 5 SHEET 3 AB5 4 LEU D 86 VAL D 91 -1 O VAL D 91 N VAL D 19 SHEET 4 AB5 4 PHE D 76 SER D 83 -1 N ASN D 79 O THR D 88 SHEET 1 AB6 6 ARG D 10 LYS D 14 0 SHEET 2 AB6 6 THR D 118 VAL D 123 1 O THR D 121 N VAL D 11 SHEET 3 AB6 6 SER D 100 GLY D 108 -1 N SER D 100 O LEU D 120 SHEET 4 AB6 6 THR D 32 GLN D 44 -1 N TYR D 42 O ILE D 103 SHEET 5 AB6 6 LEU D 50 ASN D 57 -1 O SER D 56 N MET D 39 SHEET 6 AB6 6 THR D 66 TYR D 67 -1 O THR D 66 N THR D 55 SHEET 1 AB7 4 ARG D 10 LYS D 14 0 SHEET 2 AB7 4 THR D 118 VAL D 123 1 O THR D 121 N VAL D 11 SHEET 3 AB7 4 SER D 100 GLY D 108 -1 N SER D 100 O LEU D 120 SHEET 4 AB7 4 GLY D 111 PHE D 114 -1 O PHE D 113 N ALA D 106 SHEET 1 AB8 4 GLU D 133 PHE D 137 0 SHEET 2 AB8 4 LYS D 149 PHE D 159 -1 O VAL D 153 N PHE D 137 SHEET 3 AB8 4 TYR D 197 SER D 206 -1 O TYR D 197 N PHE D 159 SHEET 4 AB8 4 VAL D 179 THR D 181 -1 N CYS D 180 O ARG D 202 SHEET 1 AB9 4 GLU D 133 PHE D 137 0 SHEET 2 AB9 4 LYS D 149 PHE D 159 -1 O VAL D 153 N PHE D 137 SHEET 3 AB9 4 TYR D 197 SER D 206 -1 O TYR D 197 N PHE D 159 SHEET 4 AB9 4 LEU D 186 LYS D 187 -1 N LEU D 186 O ALA D 198 SHEET 1 AC1 4 LYS D 173 VAL D 175 0 SHEET 2 AC1 4 VAL D 164 VAL D 170 -1 N VAL D 170 O LYS D 173 SHEET 3 AC1 4 HIS D 216 PHE D 223 -1 O GLN D 222 N GLU D 165 SHEET 4 AC1 4 GLN D 242 TRP D 249 -1 O GLN D 242 N PHE D 223 SSBOND 1 CYS A 102 CYS A 166 1555 1555 2.07 SSBOND 2 CYS A 206 CYS A 261 1555 1555 2.02 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.04 SSBOND 4 CYS C 23 CYS C 104 1555 1555 2.07 SSBOND 5 CYS C 147 CYS C 197 1555 1555 2.04 SSBOND 6 CYS C 172 CYS D 180 1555 1555 2.05 SSBOND 7 CYS D 23 CYS D 104 1555 1555 2.03 SSBOND 8 CYS D 154 CYS D 219 1555 1555 2.04 LINK ND2 ASN A 20 C1 NAG E 1 1555 1555 1.43 LINK ND2 ASN A 42 C1 NAG F 1 1555 1555 1.43 LINK ND2 ASN A 163 C1 NAG G 1 1555 1555 1.43 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.42 LINK O6 NAG E 1 C1 FUC E 4 1555 1555 1.40 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.42 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.42 LINK O6 NAG G 1 C1 FUC G 3 1555 1555 1.40 CISPEP 1 TYR A 92 PRO A 93 0 -1.89 CISPEP 2 TYR A 212 PRO A 213 0 1.55 CISPEP 3 HIS B 31 PRO B 32 0 3.86 CISPEP 4 HIS D 7 PRO D 8 0 -0.19 CISPEP 5 TYR D 160 PRO D 161 0 3.74 CRYST1 78.930 79.250 189.160 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012669 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005287 0.00000