HEADER ISOMERASE 15-OCT-14 4WOK TITLE CRYSTAL STRUCTURE OF UDP-GLUCOSE 4-EPIMERASE FROM BRUCELLA OVIS IN TITLE 2 COMPLEX WITH NAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GLUCOSE 4-EPIMERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BROVA.00085.C; COMPND 5 EC: 5.1.3.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA OVIS; SOURCE 3 ORGANISM_TAXID: 444178; SOURCE 4 STRAIN: ATCC 25840 / 63/290 / NCTC 10512; SOURCE 5 ATCC: 25840; SOURCE 6 GENE: GALE-1, BOV_A0474; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: BROVA.00085.C.B1 KEYWDS SSGCID, BRUCELLA OVIS, BRUCELLOSIS, UDP-GLUCOSE 4-EPIMERASE, KEYWDS 2 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 27-SEP-23 4WOK 1 SOURCE REMARK REVDAT 2 25-FEB-15 4WOK 1 REMARK REVDAT 1 26-NOV-14 4WOK 0 JRNL AUTH SSGCID,SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS JRNL AUTH 2 DISEASE (SSGCID) JRNL TITL CRYSTAL STRUCTURE OF UDP-GLUCOSE 4-EPIMERASE FROM BRUCELLA JRNL TITL 2 OVIS IN COMPLEX WITH NAD JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 36179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2418 - 4.3487 1.00 2800 149 0.1446 0.1487 REMARK 3 2 4.3487 - 3.4522 1.00 2684 143 0.1378 0.1806 REMARK 3 3 3.4522 - 3.0159 1.00 2677 142 0.1664 0.1932 REMARK 3 4 3.0159 - 2.7402 1.00 2647 137 0.1703 0.2095 REMARK 3 5 2.7402 - 2.5438 1.00 2643 140 0.1690 0.2174 REMARK 3 6 2.5438 - 2.3939 1.00 2623 133 0.1653 0.1862 REMARK 3 7 2.3939 - 2.2740 1.00 2643 141 0.1761 0.2140 REMARK 3 8 2.2740 - 2.1750 1.00 2628 141 0.1753 0.2130 REMARK 3 9 2.1750 - 2.0913 1.00 2598 138 0.1887 0.2242 REMARK 3 10 2.0913 - 2.0191 1.00 2630 130 0.2012 0.2539 REMARK 3 11 2.0191 - 1.9560 1.00 2604 142 0.2212 0.2838 REMARK 3 12 1.9560 - 1.9001 1.00 2589 136 0.2428 0.2864 REMARK 3 13 1.9001 - 1.8500 0.99 2603 138 0.2824 0.3546 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2612 REMARK 3 ANGLE : 1.136 3583 REMARK 3 CHIRALITY : 0.045 406 REMARK 3 PLANARITY : 0.005 468 REMARK 3 DIHEDRAL : 12.862 924 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2416 6.0299 42.9859 REMARK 3 T TENSOR REMARK 3 T11: 0.1664 T22: 0.2737 REMARK 3 T33: 0.2005 T12: -0.0011 REMARK 3 T13: 0.0118 T23: 0.1176 REMARK 3 L TENSOR REMARK 3 L11: 1.7863 L22: 1.4368 REMARK 3 L33: 1.5489 L12: -0.0716 REMARK 3 L13: -0.3878 L23: 0.4463 REMARK 3 S TENSOR REMARK 3 S11: 0.0335 S12: 0.2290 S13: 0.0118 REMARK 3 S21: -0.1922 S22: -0.1893 S23: -0.1627 REMARK 3 S31: -0.1195 S32: 0.4653 S33: 0.1204 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5873 15.2871 55.3578 REMARK 3 T TENSOR REMARK 3 T11: 0.2090 T22: 0.1783 REMARK 3 T33: 0.2134 T12: -0.0247 REMARK 3 T13: -0.0312 T23: 0.0599 REMARK 3 L TENSOR REMARK 3 L11: 1.9021 L22: 1.0533 REMARK 3 L33: 2.0475 L12: 0.2229 REMARK 3 L13: -0.4121 L23: 0.0936 REMARK 3 S TENSOR REMARK 3 S11: 0.0420 S12: 0.0537 S13: 0.3131 REMARK 3 S21: -0.0280 S22: -0.1987 S23: -0.0739 REMARK 3 S31: -0.3317 S32: 0.0667 S33: 0.1462 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9146 22.1108 39.9922 REMARK 3 T TENSOR REMARK 3 T11: 0.3496 T22: 0.3163 REMARK 3 T33: 0.3618 T12: -0.0152 REMARK 3 T13: -0.0398 T23: 0.1893 REMARK 3 L TENSOR REMARK 3 L11: 0.2943 L22: 0.7980 REMARK 3 L33: 1.5331 L12: 0.3625 REMARK 3 L13: -0.1528 L23: -0.0512 REMARK 3 S TENSOR REMARK 3 S11: -0.0612 S12: 0.3021 S13: 0.3274 REMARK 3 S21: -0.1124 S22: -0.0955 S23: 0.0026 REMARK 3 S31: -0.4403 S32: 0.1356 S33: 0.0579 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 261 THROUGH 327 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5311 26.7853 33.2395 REMARK 3 T TENSOR REMARK 3 T11: 0.4750 T22: 0.4708 REMARK 3 T33: 0.4451 T12: -0.0052 REMARK 3 T13: -0.0884 T23: 0.2698 REMARK 3 L TENSOR REMARK 3 L11: 0.0882 L22: 0.3813 REMARK 3 L33: 0.8238 L12: 0.0514 REMARK 3 L13: -0.1346 L23: 0.1247 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: 0.2143 S13: 0.2247 REMARK 3 S21: -0.1319 S22: -0.0797 S23: -0.0418 REMARK 3 S31: -0.4651 S32: -0.0314 S33: -0.1765 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WOK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000204201. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : RIGAKU VARIMAX REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE 2.5.6 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36182 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : 0.03500 REMARK 200 FOR THE DATA SET : 26.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.55600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2C20, MODIFIED WITH CCP4 PROGRAM REMARK 200 CHAINSAW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MCSG1 SCREEN, G11 40% PEG 300, 100MM REMARK 280 NAPHOSPHATE PH 4.2; BROVA.00085.C.B1.PS02133 AT 15MG/ML, REMARK 280 SUPPLEMENTED WITH 2.5MM NAD; DIRECT CRYO; TRAY 257996G11, PUCK REMARK 280 KPY8-8, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.24000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.23000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.42500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.24000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.23000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.42500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.24000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.23000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.42500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.24000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.23000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 63.42500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 504 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 538 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 577 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 582 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 328 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 ARG A 110 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 125 CG1 CG2 REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 GLU A 215 CG CD OE1 OE2 REMARK 470 ARG A 257 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 325 CG CD OE1 OE2 REMARK 470 ARG A 327 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 4 14.74 -144.02 REMARK 500 ALA A 77 89.11 -170.97 REMARK 500 SER A 118 -156.82 -103.07 REMARK 500 PHE A 171 -72.03 -92.84 REMARK 500 GLU A 244 31.46 -84.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 184 OE1 REMARK 620 2 HIS A 186 ND1 99.9 REMARK 620 3 GLU A 189 OE2 116.7 132.1 REMARK 620 4 HIS A 191 ND1 85.7 117.4 96.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BROVA.00085.C RELATED DB: TARGETTRACK DBREF 4WOK A 1 328 UNP A5VUK4 A5VUK4_BRUO2 1 328 SEQADV 4WOK MET A -7 UNP A5VUK4 INITIATING METHIONINE SEQADV 4WOK ALA A -6 UNP A5VUK4 EXPRESSION TAG SEQADV 4WOK HIS A -5 UNP A5VUK4 EXPRESSION TAG SEQADV 4WOK HIS A -4 UNP A5VUK4 EXPRESSION TAG SEQADV 4WOK HIS A -3 UNP A5VUK4 EXPRESSION TAG SEQADV 4WOK HIS A -2 UNP A5VUK4 EXPRESSION TAG SEQADV 4WOK HIS A -1 UNP A5VUK4 EXPRESSION TAG SEQADV 4WOK HIS A 0 UNP A5VUK4 EXPRESSION TAG SEQADV 4WOK ALA A 68 UNP A5VUK4 VAL 68 ENGINEERED MUTATION SEQADV 4WOK HIS A 321 UNP A5VUK4 TYR 321 ENGINEERED MUTATION SEQRES 1 A 336 MET ALA HIS HIS HIS HIS HIS HIS MET SER ALA ASN ASN SEQRES 2 A 336 VAL LEU VAL VAL GLY GLY ALA GLY PHE ILE GLY SER HIS SEQRES 3 A 336 THR ALA LYS LEU LEU ALA GLY GLN GLY TYR ALA PRO VAL SEQRES 4 A 336 VAL TYR ASP ASN LEU SER THR GLY HIS GLN SER ALA VAL SEQRES 5 A 336 ARG TRP GLY ASP PHE VAL GLU GLY ASP ILE LEU ASP GLN SEQRES 6 A 336 ALA ARG LEU VAL GLU THR MET GLU LYS TYR ALA PRO VAL SEQRES 7 A 336 ALA VAL ILE HIS PHE ALA ALA SER ALA TYR VAL GLY GLU SEQRES 8 A 336 SER VAL GLU ASP PRO ALA LYS TYR TYR ARG ASN ASN VAL SEQRES 9 A 336 GLY GLY THR GLN SER LEU LEU ASP ALA CYS ARG LEU THR SEQRES 10 A 336 ARG THR GLN ASN VAL ILE PHE SER SER SER CYS ALA THR SEQRES 11 A 336 TYR GLY VAL PRO SER ARG LEU PRO ILE GLY GLU GLY GLU SEQRES 12 A 336 ALA GLN ASN PRO ILE ASN PRO TYR GLY ARG THR LYS LEU SEQRES 13 A 336 ILE ALA GLU HIS MET LEU ALA ASP TYR ALA VAL ALA TYR SEQRES 14 A 336 GLY LEU ARG TYR VAL ALA LEU ARG TYR PHE ASN ALA SER SEQRES 15 A 336 GLY ALA ASP ILE ASP GLY GLU LEU GLY GLU LYS HIS ASP SEQRES 16 A 336 PRO GLU THR HIS LEU ILE PRO ARG ALA MET MET ALA ALA SEQRES 17 A 336 ALA GLY ARG LEU ASP VAL LEU GLU VAL TYR GLY ASP ASP SEQRES 18 A 336 TYR GLU THR PRO ASP GLY THR CYS ILE ARG ASP TYR ILE SEQRES 19 A 336 HIS VAL THR ASP LEU ALA ARG ALA HIS VAL LEU ALA VAL SEQRES 20 A 336 GLU HIS LEU LYS GLU ALA GLY GLY ASN LEU ALA VAL ASN SEQRES 21 A 336 LEU GLY THR GLY ARG GLY THR SER ILE ARG GLU ILE VAL SEQRES 22 A 336 GLN SER ILE GLY ARG LEU THR GLY ARG SER VAL PRO VAL SEQRES 23 A 336 ALA MET ARG ALA ARG ARG ALA GLY ASP PRO PRO ALA LEU SEQRES 24 A 336 TYR ALA ASP PRO ALA LEU ALA ALA GLU LYS LEU GLY PHE SEQRES 25 A 336 HIS THR VAL TYR SER ASP LEU ASP THR ILE ILE ARG THR SEQRES 26 A 336 ALA ALA PRO HIS PHE GLY LEU GLU VAL ARG GLY HET NAD A 400 44 HET ZN A 401 1 HET PO4 A 402 5 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 ZN ZN 2+ FORMUL 4 PO4 O4 P 3- FORMUL 5 HOH *242(H2 O) HELIX 1 AA1 GLY A 13 GLN A 26 1 14 HELIX 2 AA2 HIS A 40 VAL A 44 5 5 HELIX 3 AA3 ASP A 56 ALA A 68 1 13 HELIX 4 AA4 GLY A 82 ASP A 87 1 6 HELIX 5 AA5 ASP A 87 VAL A 96 1 10 HELIX 6 AA6 VAL A 96 THR A 109 1 14 HELIX 7 AA7 SER A 119 GLY A 124 5 6 HELIX 8 AA8 ASN A 141 GLY A 162 1 22 HELIX 9 AA9 HIS A 191 ALA A 201 1 11 HELIX 10 AB1 VAL A 228 GLU A 244 1 17 HELIX 11 AB2 ILE A 261 GLY A 273 1 13 HELIX 12 AB3 PRO A 295 GLY A 303 1 9 HELIX 13 AB4 ASP A 310 ALA A 319 1 10 HELIX 14 AB5 PRO A 320 GLY A 323 5 4 SHEET 1 AA1 7 PHE A 49 GLU A 51 0 SHEET 2 AA1 7 ALA A 29 ASP A 34 1 N VAL A 32 O VAL A 50 SHEET 3 AA1 7 ASN A 5 VAL A 9 1 N VAL A 8 O VAL A 31 SHEET 4 AA1 7 ALA A 71 HIS A 74 1 O ILE A 73 N LEU A 7 SHEET 5 AA1 7 ASN A 113 SER A 117 1 O ASN A 113 N VAL A 72 SHEET 6 AA1 7 ARG A 164 ARG A 169 1 O LEU A 168 N PHE A 116 SHEET 7 AA1 7 LEU A 249 ASN A 252 1 O LEU A 249 N ALA A 167 SHEET 1 AA2 2 ASN A 172 SER A 174 0 SHEET 2 AA2 2 TYR A 225 HIS A 227 1 O ILE A 226 N ASN A 172 SHEET 1 AA3 2 LEU A 207 TYR A 210 0 SHEET 2 AA3 2 VAL A 278 ARG A 281 1 O ARG A 281 N VAL A 209 SHEET 1 AA4 2 ILE A 222 ARG A 223 0 SHEET 2 AA4 2 THR A 259 SER A 260 -1 O THR A 259 N ARG A 223 LINK OE1 GLU A 184 ZN ZN A 401 1555 1555 2.22 LINK ND1 HIS A 186 ZN ZN A 401 1555 1555 2.23 LINK OE2 GLU A 189 ZN ZN A 401 1555 1555 2.23 LINK ND1 HIS A 191 ZN ZN A 401 1555 1555 2.07 CISPEP 1 LEU A 129 PRO A 130 0 1.83 CISPEP 2 ASP A 187 PRO A 188 0 5.21 SITE 1 AC1 36 GLY A 10 ALA A 12 GLY A 13 PHE A 14 SITE 2 AC1 36 ILE A 15 ASP A 34 ASN A 35 LEU A 36 SITE 3 AC1 36 SER A 37 THR A 38 GLY A 39 GLY A 52 SITE 4 AC1 36 ASP A 53 ILE A 54 PHE A 75 ALA A 76 SITE 5 AC1 36 ALA A 77 SER A 78 ASN A 94 SER A 117 SITE 6 AC1 36 SER A 118 TYR A 143 LYS A 147 TYR A 170 SITE 7 AC1 36 PHE A 171 ASN A 172 ALA A 173 HIS A 186 SITE 8 AC1 36 HOH A 583 HOH A 594 HOH A 608 HOH A 637 SITE 9 AC1 36 HOH A 657 HOH A 659 HOH A 675 HOH A 676 SITE 1 AC2 4 GLU A 184 HIS A 186 GLU A 189 HIS A 191 SITE 1 AC3 6 HIS A 321 HOH A 654 HOH A 686 HOH A 713 SITE 2 AC3 6 HOH A 723 HOH A 729 CRYST1 76.480 86.460 126.850 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013075 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011566 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007883 0.00000