HEADER LYASE 17-OCT-14 4WPA TITLE CRYSTAL STRUCTURE OF ADENYLYL CYCLASE MA1120 FROM MYCOBACTERIUM AVIUM TITLE 2 BOUND TO PYROPHOSPHATE AND CALCIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MA1120; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 53-216; COMPND 5 SYNONYM: CYA1120,ADENYLYL CYCLASE; COMPND 6 EC: 4.6.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM AVIUM; SOURCE 3 ORGANISM_TAXID: 1764; SOURCE 4 STRAIN: TN 104; SOURCE 5 GENE: CYA1120; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ADENYLYL CYCLASE, PYROPHOSPHATE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR N.G.BHARAMBE,D.V.BARATHY,K.SUGUNA REVDAT 2 08-NOV-23 4WPA 1 JRNL REMARK LINK REVDAT 1 02-SEP-15 4WPA 0 JRNL AUTH D.V.BARATHY,N.G.BHARAMBE,W.SYED,A.ZAVERI,S.S.VISWESWARIAH, JRNL AUTH 2 M.COLA SIGMAF O,S.MISQUITH,K.SUGUNA JRNL TITL AUTOINHIBITORY MECHANISM AND ACTIVITY-RELATED STRUCTURAL JRNL TITL 2 CHANGES IN A MYCOBACTERIAL ADENYLYL CYCLASE JRNL REF J.STRUCT.BIOL. V. 190 304 2015 JRNL REFN ESSN 1095-8657 JRNL PMID 25916753 JRNL DOI 10.1016/J.JSB.2015.04.013 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 33209 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1627 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.9949 - 3.8910 1.00 2723 122 0.1734 0.1951 REMARK 3 2 3.8910 - 3.0888 1.00 2637 134 0.1678 0.2146 REMARK 3 3 3.0888 - 2.6985 1.00 2637 162 0.1835 0.2136 REMARK 3 4 2.6985 - 2.4518 1.00 2654 118 0.1808 0.2277 REMARK 3 5 2.4518 - 2.2761 1.00 2638 133 0.1804 0.2102 REMARK 3 6 2.2761 - 2.1419 1.00 2607 139 0.1893 0.2291 REMARK 3 7 2.1419 - 2.0347 1.00 2643 132 0.1835 0.2272 REMARK 3 8 2.0347 - 1.9461 1.00 2634 120 0.1880 0.2157 REMARK 3 9 1.9461 - 1.8712 1.00 2589 143 0.2533 0.3139 REMARK 3 10 1.8712 - 1.8066 1.00 2621 137 0.2372 0.2278 REMARK 3 11 1.8066 - 1.7501 1.00 2603 156 0.2628 0.3239 REMARK 3 12 1.7501 - 1.7001 1.00 2596 131 0.2902 0.3272 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2475 REMARK 3 ANGLE : 1.054 3344 REMARK 3 CHIRALITY : 0.041 384 REMARK 3 PLANARITY : 0.005 438 REMARK 3 DIHEDRAL : 14.102 908 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1090 -39.9385 115.0405 REMARK 3 T TENSOR REMARK 3 T11: 0.2335 T22: 0.1565 REMARK 3 T33: 0.1404 T12: -0.0083 REMARK 3 T13: 0.0237 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 4.6785 L22: 2.3736 REMARK 3 L33: 2.1214 L12: -1.7223 REMARK 3 L13: 0.0117 L23: -0.0717 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: -0.3226 S13: 0.1844 REMARK 3 S21: 0.2644 S22: 0.0530 S23: 0.0104 REMARK 3 S31: -0.2527 S32: -0.1117 S33: -0.0518 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 131 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.8531 -53.5223 112.4271 REMARK 3 T TENSOR REMARK 3 T11: 0.1623 T22: 0.1499 REMARK 3 T33: 0.1437 T12: 0.0074 REMARK 3 T13: -0.0088 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 2.1259 L22: 2.5189 REMARK 3 L33: 2.6807 L12: 0.2563 REMARK 3 L13: -0.1185 L23: 0.1175 REMARK 3 S TENSOR REMARK 3 S11: 0.0503 S12: -0.1598 S13: -0.1227 REMARK 3 S21: 0.2389 S22: 0.0006 S23: 0.0575 REMARK 3 S31: 0.1136 S32: 0.0114 S33: -0.0256 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 50 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.8753 -43.7635 91.9628 REMARK 3 T TENSOR REMARK 3 T11: 0.2334 T22: 0.1809 REMARK 3 T33: 0.0889 T12: -0.0043 REMARK 3 T13: -0.0308 T23: -0.0426 REMARK 3 L TENSOR REMARK 3 L11: 2.7456 L22: 2.5160 REMARK 3 L33: 1.7480 L12: -1.2561 REMARK 3 L13: 0.3224 L23: -1.5648 REMARK 3 S TENSOR REMARK 3 S11: 0.0512 S12: -0.0591 S13: 0.0538 REMARK 3 S21: -0.3468 S22: -0.0362 S23: -0.0447 REMARK 3 S31: -0.0099 S32: 0.0504 S33: -0.0024 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 96 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1738 -41.0632 91.0967 REMARK 3 T TENSOR REMARK 3 T11: 0.2316 T22: 0.2094 REMARK 3 T33: 0.2157 T12: 0.0159 REMARK 3 T13: -0.0756 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 2.9715 L22: 3.2750 REMARK 3 L33: 3.0182 L12: -0.2448 REMARK 3 L13: -0.9742 L23: 0.4440 REMARK 3 S TENSOR REMARK 3 S11: -0.0436 S12: 0.2869 S13: -0.0732 REMARK 3 S21: -0.2518 S22: 0.0255 S23: 0.2716 REMARK 3 S31: -0.1834 S32: -0.2322 S33: -0.0078 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WPA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204213. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33241 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 49.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.63600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4WP8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 30%(W/V) PEG 1000, PH 7.5, REMARK 280 MICROBATCH, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.86000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 47 REMARK 465 GLN A 48 REMARK 465 GLY A 49 REMARK 465 ALA A 50 REMARK 465 ALA A 132 REMARK 465 ASN A 133 REMARK 465 ARG A 134 REMARK 465 LYS A 135 REMARK 465 ARG A 136 REMARK 465 HIS A 137 REMARK 465 GLU A 138 REMARK 465 ARG A 190 REMARK 465 SER A 191 REMARK 465 ASP A 192 REMARK 465 PHE B 47 REMARK 465 GLN B 48 REMARK 465 GLY B 49 REMARK 465 ARG B 134 REMARK 465 LYS B 135 REMARK 465 ARG B 136 REMARK 465 HIS B 137 REMARK 465 GLU B 138 REMARK 465 SER B 191 REMARK 465 ASP B 192 REMARK 465 GLY B 193 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 51 CE REMARK 470 ARG A 54 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 86 CG CD CE NZ REMARK 470 ARG A 94 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 103 CD OE1 NE2 REMARK 470 ARG A 129 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 130 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 ARG A 141 CD NE CZ NH1 NH2 REMARK 470 ARG A 195 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 205 CE NZ REMARK 470 ARG A 212 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 54 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 75 CZ NH1 NH2 REMARK 470 LYS B 79 CD CE NZ REMARK 470 ARG B 93 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 94 CD NE CZ NH1 NH2 REMARK 470 HIS B 98 ND1 CE1 REMARK 470 GLN B 103 CG CD OE1 NE2 REMARK 470 ARG B 113 NH1 NH2 REMARK 470 ARG B 119 NE CZ NH1 NH2 REMARK 470 GLU B 123 OE2 REMARK 470 ARG B 126 NH2 REMARK 470 ARG B 130 CD NE CZ NH1 NH2 REMARK 470 ARG B 141 NH1 REMARK 470 ARG B 153 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 154 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 185 NH2 REMARK 470 ARG B 190 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 205 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 510 O HOH B 512 2.08 REMARK 500 O HOH A 510 O HOH A 542 2.11 REMARK 500 O HOH B 555 O HOH B 556 2.12 REMARK 500 O HOH A 566 O HOH A 567 2.13 REMARK 500 O HOH B 442 O HOH B 527 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 411 O HOH B 422 1656 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 161 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 61 OD1 REMARK 620 2 ILE A 62 O 94.4 REMARK 620 3 ASP A 105 OD2 99.4 82.4 REMARK 620 4 PPV A 302 O21 90.2 100.1 169.9 REMARK 620 5 PPV A 302 O12 164.1 91.9 95.9 74.4 REMARK 620 6 HOH A 465 O 91.3 167.9 86.0 90.6 85.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 61 OD2 REMARK 620 2 ILE B 62 O 86.6 REMARK 620 3 ASP B 105 OD2 97.8 79.4 REMARK 620 4 PPV B 302 O21 87.0 98.0 174.3 REMARK 620 5 PPV B 302 O22 167.3 88.3 92.6 82.2 REMARK 620 6 HOH B 531 O 98.9 166.2 87.4 94.9 88.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PPV A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PPV B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WP3 RELATED DB: PDB REMARK 900 RELATED ID: 4WP8 RELATED DB: PDB REMARK 900 RELATED ID: 4WP9 RELATED DB: PDB DBREF 4WPA A 54 217 UNP Q5UFR5 Q5UFR5_MYCAV 53 216 DBREF 4WPA B 54 217 UNP Q5UFR5 Q5UFR5_MYCAV 53 216 SEQADV 4WPA PHE A 47 UNP Q5UFR5 EXPRESSION TAG SEQADV 4WPA GLN A 48 UNP Q5UFR5 EXPRESSION TAG SEQADV 4WPA GLY A 49 UNP Q5UFR5 EXPRESSION TAG SEQADV 4WPA ALA A 50 UNP Q5UFR5 EXPRESSION TAG SEQADV 4WPA MET A 51 UNP Q5UFR5 EXPRESSION TAG SEQADV 4WPA GLY A 52 UNP Q5UFR5 EXPRESSION TAG SEQADV 4WPA SER A 53 UNP Q5UFR5 EXPRESSION TAG SEQADV 4WPA PHE B 47 UNP Q5UFR5 EXPRESSION TAG SEQADV 4WPA GLN B 48 UNP Q5UFR5 EXPRESSION TAG SEQADV 4WPA GLY B 49 UNP Q5UFR5 EXPRESSION TAG SEQADV 4WPA ALA B 50 UNP Q5UFR5 EXPRESSION TAG SEQADV 4WPA MET B 51 UNP Q5UFR5 EXPRESSION TAG SEQADV 4WPA GLY B 52 UNP Q5UFR5 EXPRESSION TAG SEQADV 4WPA SER B 53 UNP Q5UFR5 EXPRESSION TAG SEQRES 1 A 171 PHE GLN GLY ALA MET GLY SER ARG VAL VAL ILE LEU PHE SEQRES 2 A 171 THR ASP ILE GLU GLU SER THR ALA LEU ASN GLU ARG ILE SEQRES 3 A 171 GLY ASP ARG ALA TRP VAL LYS LEU ILE SER SER HIS ASP SEQRES 4 A 171 LYS LEU VAL SER ASP LEU VAL ARG ARG GLN SER GLY HIS SEQRES 5 A 171 VAL VAL LYS SER GLN GLY ASP GLY PHE MET VAL ALA PHE SEQRES 6 A 171 ALA ARG PRO GLU GLN ALA VAL ARG CYS GLY ILE GLU LEU SEQRES 7 A 171 GLN ARG ALA LEU ARG ARG ASN ALA ASN ARG LYS ARG HIS SEQRES 8 A 171 GLU GLU ILE ARG VAL ARG ILE GLY ILE HIS MET GLY ARG SEQRES 9 A 171 SER VAL ARG ARG GLY ASP ASP LEU PHE GLY ARG ASN VAL SEQRES 10 A 171 ALA MET ALA ALA ARG VAL ALA ALA GLN ALA ALA GLY GLY SEQRES 11 A 171 GLU ILE LEU VAL SER GLN PRO VAL ARG ASP ALA LEU SER SEQRES 12 A 171 ARG SER ASP GLY ILE ARG PHE ASP ASP GLY ARG GLU VAL SEQRES 13 A 171 GLU LEU LYS GLY PHE SER GLY THR TYR ARG LEU PHE ALA SEQRES 14 A 171 VAL LEU SEQRES 1 B 171 PHE GLN GLY ALA MET GLY SER ARG VAL VAL ILE LEU PHE SEQRES 2 B 171 THR ASP ILE GLU GLU SER THR ALA LEU ASN GLU ARG ILE SEQRES 3 B 171 GLY ASP ARG ALA TRP VAL LYS LEU ILE SER SER HIS ASP SEQRES 4 B 171 LYS LEU VAL SER ASP LEU VAL ARG ARG GLN SER GLY HIS SEQRES 5 B 171 VAL VAL LYS SER GLN GLY ASP GLY PHE MET VAL ALA PHE SEQRES 6 B 171 ALA ARG PRO GLU GLN ALA VAL ARG CYS GLY ILE GLU LEU SEQRES 7 B 171 GLN ARG ALA LEU ARG ARG ASN ALA ASN ARG LYS ARG HIS SEQRES 8 B 171 GLU GLU ILE ARG VAL ARG ILE GLY ILE HIS MET GLY ARG SEQRES 9 B 171 SER VAL ARG ARG GLY ASP ASP LEU PHE GLY ARG ASN VAL SEQRES 10 B 171 ALA MET ALA ALA ARG VAL ALA ALA GLN ALA ALA GLY GLY SEQRES 11 B 171 GLU ILE LEU VAL SER GLN PRO VAL ARG ASP ALA LEU SER SEQRES 12 B 171 ARG SER ASP GLY ILE ARG PHE ASP ASP GLY ARG GLU VAL SEQRES 13 B 171 GLU LEU LYS GLY PHE SER GLY THR TYR ARG LEU PHE ALA SEQRES 14 B 171 VAL LEU HET CA A 301 1 HET PPV A 302 9 HET CA B 301 1 HET PPV B 302 9 HETNAM CA CALCIUM ION HETNAM PPV PYROPHOSPHATE FORMUL 3 CA 2(CA 2+) FORMUL 4 PPV 2(H4 O7 P2) FORMUL 7 HOH *325(H2 O) HELIX 1 AA1 GLU A 64 GLN A 95 1 32 HELIX 2 AA2 ARG A 113 ASN A 131 1 19 HELIX 3 AA3 GLY A 160 ALA A 173 1 14 HELIX 4 AA4 GLN A 182 LEU A 188 1 7 HELIX 5 AA5 GLU B 64 GLN B 95 1 32 HELIX 6 AA6 ARG B 113 ASN B 133 1 21 HELIX 7 AA7 GLY B 160 ALA B 173 1 14 HELIX 8 AA8 GLN B 182 LEU B 188 1 7 SHEET 1 AA1 5 HIS A 98 GLN A 103 0 SHEET 2 AA1 5 GLY A 106 PHE A 111 -1 O ALA A 110 N HIS A 98 SHEET 3 AA1 5 SER A 53 ILE A 62 -1 N LEU A 58 O VAL A 109 SHEET 4 AA1 5 VAL A 142 ARG A 154 -1 O HIS A 147 N ILE A 57 SHEET 5 AA1 5 ASP A 157 PHE A 159 -1 O PHE A 159 N VAL A 152 SHEET 1 AA2 7 HIS A 98 GLN A 103 0 SHEET 2 AA2 7 GLY A 106 PHE A 111 -1 O ALA A 110 N HIS A 98 SHEET 3 AA2 7 SER A 53 ILE A 62 -1 N LEU A 58 O VAL A 109 SHEET 4 AA2 7 VAL A 142 ARG A 154 -1 O HIS A 147 N ILE A 57 SHEET 5 AA2 7 ILE A 178 SER A 181 1 O LEU A 179 N ILE A 144 SHEET 6 AA2 7 TYR A 211 ALA A 215 -1 O PHE A 214 N VAL A 180 SHEET 7 AA2 7 ARG A 200 VAL A 202 -1 N ARG A 200 O LEU A 213 SHEET 1 AA3 5 HIS B 98 GLN B 103 0 SHEET 2 AA3 5 GLY B 106 PHE B 111 -1 O MET B 108 N LYS B 101 SHEET 3 AA3 5 SER B 53 ILE B 62 -1 N LEU B 58 O VAL B 109 SHEET 4 AA3 5 VAL B 142 ARG B 154 -1 O HIS B 147 N ILE B 57 SHEET 5 AA3 5 ASP B 157 PHE B 159 -1 O PHE B 159 N VAL B 152 SHEET 1 AA4 7 HIS B 98 GLN B 103 0 SHEET 2 AA4 7 GLY B 106 PHE B 111 -1 O MET B 108 N LYS B 101 SHEET 3 AA4 7 SER B 53 ILE B 62 -1 N LEU B 58 O VAL B 109 SHEET 4 AA4 7 VAL B 142 ARG B 154 -1 O HIS B 147 N ILE B 57 SHEET 5 AA4 7 ILE B 178 SER B 181 1 O LEU B 179 N ILE B 144 SHEET 6 AA4 7 TYR B 211 ALA B 215 -1 O PHE B 214 N VAL B 180 SHEET 7 AA4 7 ARG B 200 VAL B 202 -1 N VAL B 202 O TYR B 211 LINK OD1 ASP A 61 CA CA A 301 1555 1555 2.36 LINK O ILE A 62 CA CA A 301 1555 1555 2.36 LINK OD2 ASP A 105 CA CA A 301 1555 1555 2.33 LINK CA CA A 301 O21 PPV A 302 1555 1555 2.34 LINK CA CA A 301 O12 PPV A 302 1555 1555 2.37 LINK CA CA A 301 O HOH A 465 1555 1555 2.37 LINK OD2 ASP B 61 CA CA B 301 1555 1555 2.34 LINK O ILE B 62 CA CA B 301 1555 1555 2.36 LINK OD2 ASP B 105 CA CA B 301 1555 1555 2.34 LINK CA CA B 301 O21 PPV B 302 1555 1555 2.34 LINK CA CA B 301 O22 PPV B 302 1555 1555 2.36 LINK CA CA B 301 O HOH B 531 1555 1555 2.38 SITE 1 AC1 5 ASP A 61 ILE A 62 ASP A 105 PPV A 302 SITE 2 AC1 5 HOH A 465 SITE 1 AC2 13 ASP A 61 ILE A 62 GLU A 64 SER A 65 SITE 2 AC2 13 THR A 66 ASP A 105 ARG A 143 CA A 301 SITE 3 AC2 13 HOH A 414 HOH A 422 HOH A 433 HOH A 465 SITE 4 AC2 13 LYS B 205 SITE 1 AC3 6 ASP B 61 ILE B 62 ASP B 105 ARG B 143 SITE 2 AC3 6 PPV B 302 HOH B 531 SITE 1 AC4 13 ARG A 168 ASP B 61 ILE B 62 GLU B 64 SITE 2 AC4 13 SER B 65 THR B 66 ASP B 105 ARG B 143 SITE 3 AC4 13 CA B 301 HOH B 423 HOH B 457 HOH B 511 SITE 4 AC4 13 HOH B 531 CRYST1 52.720 55.720 55.330 90.00 110.22 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018968 0.000000 0.006986 0.00000 SCALE2 0.000000 0.017947 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019260 0.00000