HEADER LIPID BINDING PROTEIN 17-OCT-14 4WPC TITLE CRYSTAL STRUCTURE OF RGD1P F-BAR DOMAIN IN COMPLEX WITH INOSITOL TITLE 2 PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO GTPASE-ACTIVATING PROTEIN RGD1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RHOGAP,RELATED GAP DOMAIN PROTEIN 1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: RGD1, YBR260C, YBR1728; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21DE3 KEYWDS F-BAR DOMAIN, PHOSPHOLIPID BINDING, PROTEIN BINDING, LIPID BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.MORAVCEVIC,M.A.LEMMON REVDAT 6 27-SEP-23 4WPC 1 REMARK REVDAT 5 14-OCT-20 4WPC 1 REMARK HETSYN REVDAT 4 23-SEP-15 4WPC 1 REMARK HET HETNAM HETATM REVDAT 3 18-FEB-15 4WPC 1 JRNL REVDAT 2 11-FEB-15 4WPC 1 JRNL REVDAT 1 24-DEC-14 4WPC 0 JRNL AUTH K.MORAVCEVIC,D.ALVARADO,K.R.SCHMITZ,J.A.KENNISTON, JRNL AUTH 2 J.M.MENDROLA,K.M.FERGUSON,M.A.LEMMON JRNL TITL COMPARISON OF SACCHAROMYCES CEREVISIAE F-BAR DOMAIN JRNL TITL 2 STRUCTURES REVEALS A CONSERVED INOSITOL PHOSPHATE BINDING JRNL TITL 3 SITE. JRNL REF STRUCTURE V. 23 352 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 25620000 JRNL DOI 10.1016/J.STR.2014.12.009 REMARK 2 REMARK 2 RESOLUTION. 3.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 19300 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.263 REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.7748 - 6.3734 0.98 2700 142 0.2208 0.2601 REMARK 3 2 6.3734 - 5.0661 1.00 2708 121 0.2699 0.3130 REMARK 3 3 5.0661 - 4.4278 1.00 2643 146 0.2223 0.2547 REMARK 3 4 4.4278 - 4.0239 0.99 2634 154 0.2591 0.2751 REMARK 3 5 4.0239 - 3.7360 0.99 2627 148 0.2938 0.3167 REMARK 3 6 3.7360 - 3.5161 1.00 2654 139 0.3156 0.4021 REMARK 3 7 3.5161 - 3.3402 0.89 2341 143 0.3345 0.3476 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4444 REMARK 3 ANGLE : 1.115 6046 REMARK 3 CHIRALITY : 0.459 733 REMARK 3 PLANARITY : 0.002 746 REMARK 3 DIHEDRAL : 16.175 1556 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WPC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000204142. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91790 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19341 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4WPE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRATE, PH 5.5, CONTAINING 0.1 REMARK 280 -0.2 M (NH4)2SO4 PLUS 10-20% (W/V) PEG3350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 89.49650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.05500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 89.49650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.05500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 HIS A 21 REMARK 465 HIS A 22 REMARK 465 HIS A 23 REMARK 465 ASP A 24 REMARK 465 ASP A 25 REMARK 465 LEU A 26 REMARK 465 ALA A 27 REMARK 465 HIS A 28 REMARK 465 LEU A 29 REMARK 465 GLY A 92 REMARK 465 SER A 93 REMARK 465 THR A 94 REMARK 465 MET A 181 REMARK 465 THR A 182 REMARK 465 ASP A 183 REMARK 465 PRO A 184 REMARK 465 THR A 185 REMARK 465 THR A 306 REMARK 465 GLY A 307 REMARK 465 LYS A 308 REMARK 465 HIS A 309 REMARK 465 SER A 310 REMARK 465 LEU A 311 REMARK 465 SER A 327 REMARK 465 MET A 328 REMARK 465 ASN A 329 REMARK 465 HIS A 330 REMARK 465 GLY A 331 REMARK 465 GLN A 332 REMARK 465 LYS A 333 REMARK 465 MET B 17 REMARK 465 HIS B 18 REMARK 465 HIS B 19 REMARK 465 HIS B 20 REMARK 465 HIS B 21 REMARK 465 HIS B 22 REMARK 465 HIS B 23 REMARK 465 ASP B 24 REMARK 465 ASN B 46 REMARK 465 GLN B 91 REMARK 465 GLY B 92 REMARK 465 SER B 93 REMARK 465 THR B 94 REMARK 465 PRO B 184 REMARK 465 THR B 185 REMARK 465 LYS B 186 REMARK 465 ASP B 278 REMARK 465 GLN B 305 REMARK 465 THR B 306 REMARK 465 GLY B 307 REMARK 465 LYS B 308 REMARK 465 HIS B 309 REMARK 465 SER B 327 REMARK 465 MET B 328 REMARK 465 ASN B 329 REMARK 465 HIS B 330 REMARK 465 GLY B 331 REMARK 465 GLN B 332 REMARK 465 LYS B 333 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 30 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 ILE A 35 CG1 CG2 CD1 REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 ASN A 40 CG OD1 ND2 REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 GLU A 74 CG CD OE1 OE2 REMARK 470 GLU A 75 CG CD OE1 OE2 REMARK 470 GLN A 78 CG CD OE1 NE2 REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 GLN A 91 CG CD OE1 NE2 REMARK 470 ASN A 95 CG OD1 ND2 REMARK 470 LYS A 100 CG CD CE NZ REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 ARG A 150 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 152 CG CD OE1 OE2 REMARK 470 HIS A 160 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 LYS A 178 CG CD CE NZ REMARK 470 ARG A 180 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 ARG A 192 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 195 CG CD CE NZ REMARK 470 LYS A 198 CG CD CE NZ REMARK 470 GLU A 199 CG CD OE1 OE2 REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 470 GLU A 202 CG CD OE1 OE2 REMARK 470 ASP A 209 CG OD1 OD2 REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 GLU A 233 CG CD OE1 OE2 REMARK 470 GLU A 247 CG CD OE1 OE2 REMARK 470 ASP A 249 CG OD1 OD2 REMARK 470 LEU A 277 CG CD1 CD2 REMARK 470 GLU A 293 CG CD OE1 OE2 REMARK 470 ARG A 294 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 305 CG CD OE1 NE2 REMARK 470 LEU A 312 CG CD1 CD2 REMARK 470 ILE A 313 CG1 CG2 CD1 REMARK 470 ASN A 314 CG OD1 ND2 REMARK 470 LYS A 315 CG CD CE NZ REMARK 470 LYS A 323 CG CD CE NZ REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 ASP B 25 CG OD1 OD2 REMARK 470 HIS B 28 CG ND1 CD2 CE1 NE2 REMARK 470 PHE B 30 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR B 32 OG1 CG2 REMARK 470 GLU B 34 CG CD OE1 OE2 REMARK 470 LYS B 37 CG CD CE NZ REMARK 470 LEU B 39 CG CD1 CD2 REMARK 470 ASN B 40 CG OD1 ND2 REMARK 470 LYS B 53 CG CD CE NZ REMARK 470 LYS B 64 CG CD CE NZ REMARK 470 LYS B 68 CG CD CE NZ REMARK 470 GLU B 75 CG CD OE1 OE2 REMARK 470 LYS B 82 CG CD CE NZ REMARK 470 LYS B 85 CG CD CE NZ REMARK 470 LYS B 99 CG CD CE NZ REMARK 470 LYS B 100 CG CD CE NZ REMARK 470 LYS B 111 CG CD CE NZ REMARK 470 LYS B 139 CG CD CE NZ REMARK 470 LYS B 149 CG CD CE NZ REMARK 470 LYS B 164 CG CD CE NZ REMARK 470 GLN B 174 CG CD OE1 NE2 REMARK 470 LYS B 178 CG CD CE NZ REMARK 470 MET B 181 CG SD CE REMARK 470 ASP B 183 CG OD1 OD2 REMARK 470 LEU B 189 CG CD1 CD2 REMARK 470 LEU B 191 CG CD1 CD2 REMARK 470 ARG B 192 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 195 CG CD CE NZ REMARK 470 LYS B 198 CG CD CE NZ REMARK 470 GLU B 199 CG CD OE1 OE2 REMARK 470 GLU B 201 CG CD OE1 OE2 REMARK 470 GLU B 202 CG CD OE1 OE2 REMARK 470 LEU B 205 CG CD1 CD2 REMARK 470 ARG B 206 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 214 CG CD OE1 OE2 REMARK 470 LYS B 216 CG CD CE NZ REMARK 470 LYS B 242 CG CD CE NZ REMARK 470 LEU B 277 CG CD1 CD2 REMARK 470 LYS B 281 CG CD CE NZ REMARK 470 ARG B 294 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 302 CG CD CE NZ REMARK 470 LEU B 312 CG CD1 CD2 REMARK 470 LYS B 315 CG CD CE NZ REMARK 470 LYS B 323 CG CD CE NZ REMARK 470 LYS B 324 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS B 145 O43 IHP B 401 0.88 REMARK 500 HZ3 LYS B 145 O43 IHP B 401 1.08 REMARK 500 O THR B 250 HG1 THR B 253 1.39 REMARK 500 O VAL A 115 HG SER A 118 1.55 REMARK 500 HZ1 LYS A 242 OD1 ASP A 243 1.58 REMARK 500 HZ3 LYS A 145 O21 IHP A 401 1.59 REMARK 500 O LEU B 246 HG1 THR B 250 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 87 112.57 66.25 REMARK 500 THR A 187 51.39 37.18 REMARK 500 THR A 190 -134.28 45.97 REMARK 500 PRO A 276 0.93 -66.61 REMARK 500 LEU A 277 -11.94 72.35 REMARK 500 VAL A 290 -64.47 -136.00 REMARK 500 SER A 291 88.95 57.62 REMARK 500 ASN A 316 -142.11 56.35 REMARK 500 LEU A 317 18.71 56.94 REMARK 500 HIS A 325 86.84 -157.24 REMARK 500 ASN B 40 -166.34 -75.57 REMARK 500 SER B 41 -170.81 -66.03 REMARK 500 PHE B 87 -95.04 -117.92 REMARK 500 PHE B 88 -71.07 -59.23 REMARK 500 ASN B 89 73.22 41.88 REMARK 500 ARG B 180 2.59 -68.85 REMARK 500 LEU B 191 -92.97 -150.92 REMARK 500 ARG B 192 -74.14 -59.55 REMARK 500 SER B 194 138.59 177.66 REMARK 500 LYS B 195 175.78 65.79 REMARK 500 ASN B 292 -75.44 61.22 REMARK 500 LYS B 324 -163.24 -70.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IHP A 401 DBREF 4WPC A 24 333 UNP P38339 RGD1_YEAST 24 333 DBREF 4WPC B 24 333 UNP P38339 RGD1_YEAST 24 333 SEQADV 4WPC MET A 17 UNP P38339 INITIATING METHIONINE SEQADV 4WPC HIS A 18 UNP P38339 EXPRESSION TAG SEQADV 4WPC HIS A 19 UNP P38339 EXPRESSION TAG SEQADV 4WPC HIS A 20 UNP P38339 EXPRESSION TAG SEQADV 4WPC HIS A 21 UNP P38339 EXPRESSION TAG SEQADV 4WPC HIS A 22 UNP P38339 EXPRESSION TAG SEQADV 4WPC HIS A 23 UNP P38339 EXPRESSION TAG SEQADV 4WPC MET B 17 UNP P38339 INITIATING METHIONINE SEQADV 4WPC HIS B 18 UNP P38339 EXPRESSION TAG SEQADV 4WPC HIS B 19 UNP P38339 EXPRESSION TAG SEQADV 4WPC HIS B 20 UNP P38339 EXPRESSION TAG SEQADV 4WPC HIS B 21 UNP P38339 EXPRESSION TAG SEQADV 4WPC HIS B 22 UNP P38339 EXPRESSION TAG SEQADV 4WPC HIS B 23 UNP P38339 EXPRESSION TAG SEQRES 1 A 317 MET HIS HIS HIS HIS HIS HIS ASP ASP LEU ALA HIS LEU SEQRES 2 A 317 PHE SER THR PRO GLU ILE LYS LYS VAL LEU ASN SER ASP SEQRES 3 A 317 VAL ALA ILE ASN ALA LEU LEU SER ARG LEU LYS GLN SER SEQRES 4 A 317 LEU LEU THR CYS GLU GLU PHE MET LYS PHE ILE ARG LYS SEQRES 5 A 317 LYS TYR ALA PHE GLU GLU GLU HIS VAL GLN GLU LEU SER SEQRES 6 A 317 LYS GLN TYR LYS HIS PHE PHE ASN ILE GLN GLY SER THR SEQRES 7 A 317 ASN SER SER LEU LYS LYS MET ILE HIS GLU VAL LEU GLY SEQRES 8 A 317 PHE ASP GLY LYS MET ALA GLN VAL LYS GLN SER TYR ILE SEQRES 9 A 317 THR ALA LEU GLN LYS MET TYR SER GLU ILE SER SER LEU SEQRES 10 A 317 LEU LEU THR MET THR LYS LEU ARG LYS SER VAL LYS GLU SEQRES 11 A 317 ASN SER LYS ARG LEU GLU LYS ASP VAL SER ASP ALA ILE SEQRES 12 A 317 HIS SER ALA GLU LYS ALA GLN SER ARG TYR ASN SER LEU SEQRES 13 A 317 CYS GLN ASP TRP ASP LYS LEU ARG MET THR ASP PRO THR SEQRES 14 A 317 LYS THR LYS LEU THR LEU ARG GLY SER LYS THR THR LYS SEQRES 15 A 317 GLU GLN GLU GLU GLU LEU LEU ARG LYS ILE ASP ASN ALA SEQRES 16 A 317 ASP LEU GLU TYR LYS GLN LYS VAL ASP HIS SER ASN SER SEQRES 17 A 317 LEU ARG ASN THR PHE ILE THR LYS GLU ARG PRO ARG ILE SEQRES 18 A 317 VAL GLN GLU LEU LYS ASP LEU ILE LEU GLU ILE ASP THR SEQRES 19 A 317 ALA MET THR ILE GLN LEU GLN LYS TYR THR ILE TRP THR SEQRES 20 A 317 GLU ASN LEU VAL LEU ASN THR GLY VAL THR ILE SER PRO SEQRES 21 A 317 LEU ASP SER THR LYS SER MET LYS SER PHE ALA GLY SER SEQRES 22 A 317 VAL SER ASN GLU ARG ASP LEU TYR SER PHE LEU ASN LYS SEQRES 23 A 317 TYR ASN GLN THR GLY LYS HIS SER LEU LEU ILE ASN LYS SEQRES 24 A 317 ASN LEU ILE PRO VAL SER TYR LYS LYS HIS PRO SER MET SEQRES 25 A 317 ASN HIS GLY GLN LYS SEQRES 1 B 317 MET HIS HIS HIS HIS HIS HIS ASP ASP LEU ALA HIS LEU SEQRES 2 B 317 PHE SER THR PRO GLU ILE LYS LYS VAL LEU ASN SER ASP SEQRES 3 B 317 VAL ALA ILE ASN ALA LEU LEU SER ARG LEU LYS GLN SER SEQRES 4 B 317 LEU LEU THR CYS GLU GLU PHE MET LYS PHE ILE ARG LYS SEQRES 5 B 317 LYS TYR ALA PHE GLU GLU GLU HIS VAL GLN GLU LEU SER SEQRES 6 B 317 LYS GLN TYR LYS HIS PHE PHE ASN ILE GLN GLY SER THR SEQRES 7 B 317 ASN SER SER LEU LYS LYS MET ILE HIS GLU VAL LEU GLY SEQRES 8 B 317 PHE ASP GLY LYS MET ALA GLN VAL LYS GLN SER TYR ILE SEQRES 9 B 317 THR ALA LEU GLN LYS MET TYR SER GLU ILE SER SER LEU SEQRES 10 B 317 LEU LEU THR MET THR LYS LEU ARG LYS SER VAL LYS GLU SEQRES 11 B 317 ASN SER LYS ARG LEU GLU LYS ASP VAL SER ASP ALA ILE SEQRES 12 B 317 HIS SER ALA GLU LYS ALA GLN SER ARG TYR ASN SER LEU SEQRES 13 B 317 CYS GLN ASP TRP ASP LYS LEU ARG MET THR ASP PRO THR SEQRES 14 B 317 LYS THR LYS LEU THR LEU ARG GLY SER LYS THR THR LYS SEQRES 15 B 317 GLU GLN GLU GLU GLU LEU LEU ARG LYS ILE ASP ASN ALA SEQRES 16 B 317 ASP LEU GLU TYR LYS GLN LYS VAL ASP HIS SER ASN SER SEQRES 17 B 317 LEU ARG ASN THR PHE ILE THR LYS GLU ARG PRO ARG ILE SEQRES 18 B 317 VAL GLN GLU LEU LYS ASP LEU ILE LEU GLU ILE ASP THR SEQRES 19 B 317 ALA MET THR ILE GLN LEU GLN LYS TYR THR ILE TRP THR SEQRES 20 B 317 GLU ASN LEU VAL LEU ASN THR GLY VAL THR ILE SER PRO SEQRES 21 B 317 LEU ASP SER THR LYS SER MET LYS SER PHE ALA GLY SER SEQRES 22 B 317 VAL SER ASN GLU ARG ASP LEU TYR SER PHE LEU ASN LYS SEQRES 23 B 317 TYR ASN GLN THR GLY LYS HIS SER LEU LEU ILE ASN LYS SEQRES 24 B 317 ASN LEU ILE PRO VAL SER TYR LYS LYS HIS PRO SER MET SEQRES 25 B 317 ASN HIS GLY GLN LYS HET IHP A 401 36 HET IHP B 401 36 HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6- HETSYN 2 IHP HEXAKISPHOSPHATE FORMUL 3 IHP 2(C6 H18 O24 P6) FORMUL 5 HOH *8(H2 O) HELIX 1 AA1 THR A 32 ASN A 40 1 9 HELIX 2 AA2 ASP A 42 TYR A 84 1 43 HELIX 3 AA3 SER A 96 ARG A 180 1 85 HELIX 4 AA4 SER A 194 LYS A 232 1 39 HELIX 5 AA5 LYS A 232 SER A 275 1 44 HELIX 6 AA6 ASP A 278 LYS A 281 5 4 HELIX 7 AA7 SER A 282 SER A 289 1 8 HELIX 8 AA8 SER A 291 GLN A 305 1 15 HELIX 9 AA9 SER B 31 LEU B 39 1 9 HELIX 10 AB1 ALA B 44 ILE B 45 5 2 HELIX 11 AB2 ALA B 47 ALA B 47 5 1 HELIX 12 AB3 LEU B 48 LYS B 85 1 38 HELIX 13 AB4 SER B 96 ARG B 180 1 85 HELIX 14 AB5 THR B 196 LYS B 232 1 37 HELIX 15 AB6 LYS B 232 SER B 275 1 44 HELIX 16 AB7 SER B 282 SER B 289 1 8 HELIX 17 AB8 ASN B 292 LYS B 302 1 11 HELIX 18 AB9 ASN B 314 ILE B 318 5 5 LINK NZ LYS B 145 O43 IHP B 401 1555 1555 1.41 CISPEP 1 THR A 190 LEU A 191 0 -6.56 CISPEP 2 LYS B 195 THR B 196 0 -4.70 SITE 1 AC1 2 ARG A 141 LYS A 145 CRYST1 178.993 74.110 105.734 90.00 104.27 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005587 0.000000 0.001421 0.00000 SCALE2 0.000000 0.013493 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009759 0.00000